Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13755

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13745 and LRK53_RS13750 are separated by 321 nucleotidesLRK53_RS13750 and LRK53_RS13755 are separated by 18 nucleotidesLRK53_RS13755 and LRK53_RS13760 are separated by 191 nucleotides LRK53_RS13745: LRK53_RS13745 - toll/interleukin-1 receptor domain-containing protein, at 3,033,236 to 3,035,452 _RS13745 LRK53_RS13750: LRK53_RS13750 - DUF4124 domain-containing protein, at 3,035,774 to 3,036,394 _RS13750 LRK53_RS13755: LRK53_RS13755 - phosphatase PAP2 family protein, at 3,036,413 to 3,037,036 _RS13755 LRK53_RS13760: LRK53_RS13760 - hypothetical protein, at 3,037,228 to 3,037,800 _RS13760 Position (kb) 3036 3037 3038Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3035.571 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.579 kb on + strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.580 kb on - strandat 3035.609 kb on - strandat 3035.858 kb on + strand, within LRK53_RS13750at 3035.858 kb on + strand, within LRK53_RS13750at 3035.858 kb on + strand, within LRK53_RS13750at 3035.858 kb on + strand, within LRK53_RS13750at 3035.858 kb on + strand, within LRK53_RS13750at 3035.858 kb on + strand, within LRK53_RS13750at 3035.858 kb on + strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.859 kb on - strand, within LRK53_RS13750at 3035.888 kb on + strand, within LRK53_RS13750at 3035.888 kb on + strand, within LRK53_RS13750at 3035.889 kb on - strand, within LRK53_RS13750at 3035.964 kb on - strand, within LRK53_RS13750at 3035.999 kb on + strand, within LRK53_RS13750at 3035.999 kb on + strand, within LRK53_RS13750at 3035.999 kb on + strand, within LRK53_RS13750at 3035.999 kb on + strand, within LRK53_RS13750at 3035.999 kb on + strand, within LRK53_RS13750at 3035.999 kb on + strand, within LRK53_RS13750at 3036.000 kb on - strand, within LRK53_RS13750at 3036.000 kb on - strand, within LRK53_RS13750at 3036.000 kb on - strand, within LRK53_RS13750at 3036.029 kb on + strand, within LRK53_RS13750at 3036.098 kb on + strand, within LRK53_RS13750at 3036.098 kb on + strand, within LRK53_RS13750at 3036.099 kb on - strand, within LRK53_RS13750at 3036.099 kb on - strand, within LRK53_RS13750at 3036.099 kb on - strand, within LRK53_RS13750at 3036.224 kb on + strand, within LRK53_RS13750at 3036.225 kb on - strand, within LRK53_RS13750at 3036.251 kb on + strand, within LRK53_RS13750at 3036.251 kb on + strand, within LRK53_RS13750at 3036.251 kb on + strand, within LRK53_RS13750at 3036.251 kb on + strand, within LRK53_RS13750at 3036.251 kb on + strand, within LRK53_RS13750at 3036.251 kb on + strand, within LRK53_RS13750at 3036.251 kb on + strand, within LRK53_RS13750at 3036.252 kb on - strand, within LRK53_RS13750at 3036.252 kb on - strand, within LRK53_RS13750at 3036.252 kb on - strand, within LRK53_RS13750at 3036.252 kb on - strand, within LRK53_RS13750at 3036.582 kb on + strand, within LRK53_RS13755at 3036.582 kb on + strand, within LRK53_RS13755at 3036.583 kb on - strand, within LRK53_RS13755at 3036.583 kb on - strand, within LRK53_RS13755at 3036.606 kb on + strand, within LRK53_RS13755at 3036.606 kb on + strand, within LRK53_RS13755at 3036.606 kb on + strand, within LRK53_RS13755at 3036.607 kb on - strand, within LRK53_RS13755at 3036.607 kb on - strand, within LRK53_RS13755at 3036.607 kb on - strand, within LRK53_RS13755at 3036.607 kb on - strand, within LRK53_RS13755at 3036.607 kb on - strand, within LRK53_RS13755at 3036.630 kb on + strand, within LRK53_RS13755at 3036.630 kb on + strand, within LRK53_RS13755at 3036.630 kb on + strand, within LRK53_RS13755at 3036.630 kb on + strand, within LRK53_RS13755at 3036.630 kb on + strand, within LRK53_RS13755at 3036.631 kb on - strand, within LRK53_RS13755at 3036.631 kb on - strand, within LRK53_RS13755at 3036.631 kb on - strand, within LRK53_RS13755at 3036.631 kb on - strand, within LRK53_RS13755at 3036.631 kb on - strand, within LRK53_RS13755at 3036.631 kb on - strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.762 kb on + strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.763 kb on - strand, within LRK53_RS13755at 3036.888 kb on + strand, within LRK53_RS13755at 3036.888 kb on + strand, within LRK53_RS13755at 3036.888 kb on + strand, within LRK53_RS13755at 3036.889 kb on - strand, within LRK53_RS13755at 3036.889 kb on - strand, within LRK53_RS13755at 3036.889 kb on - strand, within LRK53_RS13755at 3036.937 kb on - strand, within LRK53_RS13755at 3036.937 kb on - strand, within LRK53_RS13755at 3036.937 kb on - strand, within LRK53_RS13755at 3037.084 kb on + strandat 3037.084 kb on + strandat 3037.084 kb on + strandat 3037.085 kb on - strandat 3037.109 kb on + strandat 3037.109 kb on + strandat 3037.109 kb on + strandat 3037.110 kb on - strandat 3037.337 kb on + strand, within LRK53_RS13760at 3037.338 kb on - strand, within LRK53_RS13760at 3037.555 kb on + strand, within LRK53_RS13760at 3037.556 kb on - strand, within LRK53_RS13760at 3037.575 kb on - strand, within LRK53_RS13760at 3037.603 kb on - strand, within LRK53_RS13760at 3037.603 kb on - strand, within LRK53_RS13760at 3037.603 kb on - strand, within LRK53_RS13760at 3037.711 kb on + strand, within LRK53_RS13760at 3037.712 kb on - strand, within LRK53_RS13760at 3037.850 kb on + strandat 3037.896 kb on + strandat 3037.951 kb on + strandat 3037.951 kb on + strandat 3037.951 kb on + strandat 3037.951 kb on + strandat 3037.951 kb on + strandat 3037.951 kb on + strandat 3037.951 kb on + strandat 3037.951 kb on + strandat 3037.952 kb on - strandat 3037.952 kb on - strandat 3037.952 kb on - strandat 3037.964 kb on + strandat 3037.965 kb on - strandat 3037.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,035,571 + -3.2
3,035,579 + -0.6
3,035,579 + -0.5
3,035,579 + -1.4
3,035,579 + +1.3
3,035,579 + -0.2
3,035,579 + -1.4
3,035,579 + +1.1
3,035,579 + +0.0
3,035,579 + -0.1
3,035,579 + -0.2
3,035,580 - -1.6
3,035,580 - +1.1
3,035,580 - -0.6
3,035,580 - -1.5
3,035,580 - -1.6
3,035,580 - -1.4
3,035,580 - +0.2
3,035,580 - -0.0
3,035,580 - +0.9
3,035,580 - -1.4
3,035,580 - -1.0
3,035,580 - -0.8
3,035,580 - -0.4
3,035,580 - -1.4
3,035,580 - -2.6
3,035,609 - -1.2
3,035,858 + LRK53_RS13750 0.14 -0.1
3,035,858 + LRK53_RS13750 0.14 +0.0
3,035,858 + LRK53_RS13750 0.14 -1.0
3,035,858 + LRK53_RS13750 0.14 -0.9
3,035,858 + LRK53_RS13750 0.14 -1.0
3,035,858 + LRK53_RS13750 0.14 -0.2
3,035,858 + LRK53_RS13750 0.14 -0.7
3,035,859 - LRK53_RS13750 0.14 -1.5
3,035,859 - LRK53_RS13750 0.14 -1.2
3,035,859 - LRK53_RS13750 0.14 -0.3
3,035,859 - LRK53_RS13750 0.14 -1.0
3,035,859 - LRK53_RS13750 0.14 -0.5
3,035,859 - LRK53_RS13750 0.14 +0.3
3,035,859 - LRK53_RS13750 0.14 -1.0
3,035,859 - LRK53_RS13750 0.14 -0.7
3,035,859 - LRK53_RS13750 0.14 -2.0
3,035,859 - LRK53_RS13750 0.14 +1.6
3,035,859 - LRK53_RS13750 0.14 -0.6
3,035,888 + LRK53_RS13750 0.18 -0.1
3,035,888 + LRK53_RS13750 0.18 -0.4
3,035,889 - LRK53_RS13750 0.19 -1.0
3,035,964 - LRK53_RS13750 0.31 +0.3
3,035,999 + LRK53_RS13750 0.36 -2.0
3,035,999 + LRK53_RS13750 0.36 -0.5
3,035,999 + LRK53_RS13750 0.36 -0.2
3,035,999 + LRK53_RS13750 0.36 -1.3
3,035,999 + LRK53_RS13750 0.36 -1.0
3,035,999 + LRK53_RS13750 0.36 +0.5
3,036,000 - LRK53_RS13750 0.36 -0.8
3,036,000 - LRK53_RS13750 0.36 -1.0
3,036,000 - LRK53_RS13750 0.36 -0.3
3,036,029 + LRK53_RS13750 0.41 +0.1
3,036,098 + LRK53_RS13750 0.52 -1.3
3,036,098 + LRK53_RS13750 0.52 -0.9
3,036,099 - LRK53_RS13750 0.52 +0.1
3,036,099 - LRK53_RS13750 0.52 -0.9
3,036,099 - LRK53_RS13750 0.52 -0.2
3,036,224 + LRK53_RS13750 0.72 +0.1
3,036,225 - LRK53_RS13750 0.73 +0.1
3,036,251 + LRK53_RS13750 0.77 -0.3
3,036,251 + LRK53_RS13750 0.77 +1.1
3,036,251 + LRK53_RS13750 0.77 -1.6
3,036,251 + LRK53_RS13750 0.77 -0.3
3,036,251 + LRK53_RS13750 0.77 +1.3
3,036,251 + LRK53_RS13750 0.77 -0.9
3,036,251 + LRK53_RS13750 0.77 +1.2
3,036,252 - LRK53_RS13750 0.77 -1.3
3,036,252 - LRK53_RS13750 0.77 +0.4
3,036,252 - LRK53_RS13750 0.77 -1.1
3,036,252 - LRK53_RS13750 0.77 +0.9
3,036,582 + LRK53_RS13755 0.27 -0.4
3,036,582 + LRK53_RS13755 0.27 -0.6
3,036,583 - LRK53_RS13755 0.27 -0.6
3,036,583 - LRK53_RS13755 0.27 -0.9
3,036,606 + LRK53_RS13755 0.31 +1.0
3,036,606 + LRK53_RS13755 0.31 -1.4
3,036,606 + LRK53_RS13755 0.31 -1.0
3,036,607 - LRK53_RS13755 0.31 -0.6
3,036,607 - LRK53_RS13755 0.31 +0.3
3,036,607 - LRK53_RS13755 0.31 +0.1
3,036,607 - LRK53_RS13755 0.31 -0.8
3,036,607 - LRK53_RS13755 0.31 +0.4
3,036,630 + LRK53_RS13755 0.35 -0.7
3,036,630 + LRK53_RS13755 0.35 +1.7
3,036,630 + LRK53_RS13755 0.35 -0.2
3,036,630 + LRK53_RS13755 0.35 -0.4
3,036,630 + LRK53_RS13755 0.35 -1.0
3,036,631 - LRK53_RS13755 0.35 -0.7
3,036,631 - LRK53_RS13755 0.35 -1.0
3,036,631 - LRK53_RS13755 0.35 -3.0
3,036,631 - LRK53_RS13755 0.35 -0.6
3,036,631 - LRK53_RS13755 0.35 +0.5
3,036,631 - LRK53_RS13755 0.35 -0.1
3,036,762 + LRK53_RS13755 0.56 -1.6
3,036,762 + LRK53_RS13755 0.56 -0.4
3,036,762 + LRK53_RS13755 0.56 +1.3
3,036,762 + LRK53_RS13755 0.56 +1.8
3,036,762 + LRK53_RS13755 0.56 -0.0
3,036,762 + LRK53_RS13755 0.56 +0.2
3,036,762 + LRK53_RS13755 0.56 -0.0
3,036,762 + LRK53_RS13755 0.56 +0.8
3,036,762 + LRK53_RS13755 0.56 +0.5
3,036,762 + LRK53_RS13755 0.56 +1.1
3,036,762 + LRK53_RS13755 0.56 -0.9
3,036,762 + LRK53_RS13755 0.56 +0.4
3,036,762 + LRK53_RS13755 0.56 -0.5
3,036,762 + LRK53_RS13755 0.56 -1.6
3,036,762 + LRK53_RS13755 0.56 +1.0
3,036,762 + LRK53_RS13755 0.56 -0.1
3,036,762 + LRK53_RS13755 0.56 -1.2
3,036,762 + LRK53_RS13755 0.56 -0.4
3,036,762 + LRK53_RS13755 0.56 +1.1
3,036,762 + LRK53_RS13755 0.56 -0.0
3,036,762 + LRK53_RS13755 0.56 -0.5
3,036,762 + LRK53_RS13755 0.56 +1.3
3,036,762 + LRK53_RS13755 0.56 -1.1
3,036,762 + LRK53_RS13755 0.56 +0.6
3,036,763 - LRK53_RS13755 0.56 -0.1
3,036,763 - LRK53_RS13755 0.56 -0.7
3,036,763 - LRK53_RS13755 0.56 +0.3
3,036,763 - LRK53_RS13755 0.56 -2.6
3,036,763 - LRK53_RS13755 0.56 +0.7
3,036,763 - LRK53_RS13755 0.56 +0.9
3,036,763 - LRK53_RS13755 0.56 -0.1
3,036,763 - LRK53_RS13755 0.56 -0.7
3,036,763 - LRK53_RS13755 0.56 +1.1
3,036,763 - LRK53_RS13755 0.56 -1.2
3,036,763 - LRK53_RS13755 0.56 -1.0
3,036,763 - LRK53_RS13755 0.56 -1.6
3,036,763 - LRK53_RS13755 0.56 -0.8
3,036,763 - LRK53_RS13755 0.56 -2.0
3,036,763 - LRK53_RS13755 0.56 -0.2
3,036,763 - LRK53_RS13755 0.56 -0.7
3,036,763 - LRK53_RS13755 0.56 -0.6
3,036,763 - LRK53_RS13755 0.56 +0.9
3,036,763 - LRK53_RS13755 0.56 -0.3
3,036,763 - LRK53_RS13755 0.56 -0.4
3,036,763 - LRK53_RS13755 0.56 +0.9
3,036,763 - LRK53_RS13755 0.56 -0.3
3,036,763 - LRK53_RS13755 0.56 -0.6
3,036,888 + LRK53_RS13755 0.76 -0.1
3,036,888 + LRK53_RS13755 0.76 +0.3
3,036,888 + LRK53_RS13755 0.76 +1.2
3,036,889 - LRK53_RS13755 0.76 +0.6
3,036,889 - LRK53_RS13755 0.76 -1.9
3,036,889 - LRK53_RS13755 0.76 -2.1
3,036,937 - LRK53_RS13755 0.84 -0.9
3,036,937 - LRK53_RS13755 0.84 +0.0
3,036,937 - LRK53_RS13755 0.84 -2.6
3,037,084 + -0.9
3,037,084 + -1.9
3,037,084 + -1.9
3,037,085 - +0.4
3,037,109 + -0.6
3,037,109 + -0.9
3,037,109 + +0.1
3,037,110 - +2.0
3,037,337 + LRK53_RS13760 0.19 -0.9
3,037,338 - LRK53_RS13760 0.19 -0.7
3,037,555 + LRK53_RS13760 0.57 -0.6
3,037,556 - LRK53_RS13760 0.57 -2.2
3,037,575 - LRK53_RS13760 0.61 +1.6
3,037,603 - LRK53_RS13760 0.65 -0.5
3,037,603 - LRK53_RS13760 0.65 -0.7
3,037,603 - LRK53_RS13760 0.65 -1.5
3,037,711 + LRK53_RS13760 0.84 +1.2
3,037,712 - LRK53_RS13760 0.84 -0.5
3,037,850 + +0.6
3,037,896 + -1.6
3,037,951 + +0.2
3,037,951 + -0.5
3,037,951 + -0.0
3,037,951 + -0.8
3,037,951 + -0.4
3,037,951 + -1.8
3,037,951 + +0.9
3,037,951 + -0.8
3,037,952 - +1.3
3,037,952 - -0.9
3,037,952 - -1.8
3,037,964 + -1.8
3,037,965 - -1.6
3,037,965 - -0.2

Or see this region's nucleotide sequence