Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13745 and LRK53_RS13750 are separated by 321 nucleotides LRK53_RS13750 and LRK53_RS13755 are separated by 18 nucleotides LRK53_RS13755 and LRK53_RS13760 are separated by 191 nucleotides
LRK53_RS13745: LRK53_RS13745 - toll/interleukin-1 receptor domain-containing protein, at 3,033,236 to 3,035,452
_RS13745
LRK53_RS13750: LRK53_RS13750 - DUF4124 domain-containing protein, at 3,035,774 to 3,036,394
_RS13750
LRK53_RS13755: LRK53_RS13755 - phosphatase PAP2 family protein, at 3,036,413 to 3,037,036
_RS13755
LRK53_RS13760: LRK53_RS13760 - hypothetical protein, at 3,037,228 to 3,037,800
_RS13760
Position (kb)
3036
3037
3038 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3035.571 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.579 kb on + strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.580 kb on - strand at 3035.609 kb on - strand at 3035.858 kb on + strand, within LRK53_RS13750 at 3035.858 kb on + strand, within LRK53_RS13750 at 3035.858 kb on + strand, within LRK53_RS13750 at 3035.858 kb on + strand, within LRK53_RS13750 at 3035.858 kb on + strand, within LRK53_RS13750 at 3035.858 kb on + strand, within LRK53_RS13750 at 3035.858 kb on + strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.859 kb on - strand, within LRK53_RS13750 at 3035.888 kb on + strand, within LRK53_RS13750 at 3035.888 kb on + strand, within LRK53_RS13750 at 3035.889 kb on - strand, within LRK53_RS13750 at 3035.964 kb on - strand, within LRK53_RS13750 at 3035.999 kb on + strand, within LRK53_RS13750 at 3035.999 kb on + strand, within LRK53_RS13750 at 3035.999 kb on + strand, within LRK53_RS13750 at 3035.999 kb on + strand, within LRK53_RS13750 at 3035.999 kb on + strand, within LRK53_RS13750 at 3035.999 kb on + strand, within LRK53_RS13750 at 3036.000 kb on - strand, within LRK53_RS13750 at 3036.000 kb on - strand, within LRK53_RS13750 at 3036.000 kb on - strand, within LRK53_RS13750 at 3036.029 kb on + strand, within LRK53_RS13750 at 3036.098 kb on + strand, within LRK53_RS13750 at 3036.098 kb on + strand, within LRK53_RS13750 at 3036.099 kb on - strand, within LRK53_RS13750 at 3036.099 kb on - strand, within LRK53_RS13750 at 3036.099 kb on - strand, within LRK53_RS13750 at 3036.224 kb on + strand, within LRK53_RS13750 at 3036.225 kb on - strand, within LRK53_RS13750 at 3036.251 kb on + strand, within LRK53_RS13750 at 3036.251 kb on + strand, within LRK53_RS13750 at 3036.251 kb on + strand, within LRK53_RS13750 at 3036.251 kb on + strand, within LRK53_RS13750 at 3036.251 kb on + strand, within LRK53_RS13750 at 3036.251 kb on + strand, within LRK53_RS13750 at 3036.251 kb on + strand, within LRK53_RS13750 at 3036.252 kb on - strand, within LRK53_RS13750 at 3036.252 kb on - strand, within LRK53_RS13750 at 3036.252 kb on - strand, within LRK53_RS13750 at 3036.252 kb on - strand, within LRK53_RS13750 at 3036.582 kb on + strand, within LRK53_RS13755 at 3036.582 kb on + strand, within LRK53_RS13755 at 3036.583 kb on - strand, within LRK53_RS13755 at 3036.583 kb on - strand, within LRK53_RS13755 at 3036.606 kb on + strand, within LRK53_RS13755 at 3036.606 kb on + strand, within LRK53_RS13755 at 3036.606 kb on + strand, within LRK53_RS13755 at 3036.607 kb on - strand, within LRK53_RS13755 at 3036.607 kb on - strand, within LRK53_RS13755 at 3036.607 kb on - strand, within LRK53_RS13755 at 3036.607 kb on - strand, within LRK53_RS13755 at 3036.607 kb on - strand, within LRK53_RS13755 at 3036.630 kb on + strand, within LRK53_RS13755 at 3036.630 kb on + strand, within LRK53_RS13755 at 3036.630 kb on + strand, within LRK53_RS13755 at 3036.630 kb on + strand, within LRK53_RS13755 at 3036.630 kb on + strand, within LRK53_RS13755 at 3036.631 kb on - strand, within LRK53_RS13755 at 3036.631 kb on - strand, within LRK53_RS13755 at 3036.631 kb on - strand, within LRK53_RS13755 at 3036.631 kb on - strand, within LRK53_RS13755 at 3036.631 kb on - strand, within LRK53_RS13755 at 3036.631 kb on - strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.762 kb on + strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.763 kb on - strand, within LRK53_RS13755 at 3036.888 kb on + strand, within LRK53_RS13755 at 3036.888 kb on + strand, within LRK53_RS13755 at 3036.888 kb on + strand, within LRK53_RS13755 at 3036.889 kb on - strand, within LRK53_RS13755 at 3036.889 kb on - strand, within LRK53_RS13755 at 3036.889 kb on - strand, within LRK53_RS13755 at 3036.937 kb on - strand, within LRK53_RS13755 at 3036.937 kb on - strand, within LRK53_RS13755 at 3036.937 kb on - strand, within LRK53_RS13755 at 3037.084 kb on + strand at 3037.084 kb on + strand at 3037.084 kb on + strand at 3037.085 kb on - strand at 3037.109 kb on + strand at 3037.109 kb on + strand at 3037.109 kb on + strand at 3037.110 kb on - strand at 3037.337 kb on + strand, within LRK53_RS13760 at 3037.338 kb on - strand, within LRK53_RS13760 at 3037.555 kb on + strand, within LRK53_RS13760 at 3037.556 kb on - strand, within LRK53_RS13760 at 3037.575 kb on - strand, within LRK53_RS13760 at 3037.603 kb on - strand, within LRK53_RS13760 at 3037.603 kb on - strand, within LRK53_RS13760 at 3037.603 kb on - strand, within LRK53_RS13760 at 3037.711 kb on + strand, within LRK53_RS13760 at 3037.712 kb on - strand, within LRK53_RS13760 at 3037.850 kb on + strand at 3037.896 kb on + strand at 3037.951 kb on + strand at 3037.951 kb on + strand at 3037.951 kb on + strand at 3037.951 kb on + strand at 3037.951 kb on + strand at 3037.951 kb on + strand at 3037.951 kb on + strand at 3037.951 kb on + strand at 3037.952 kb on - strand at 3037.952 kb on - strand at 3037.952 kb on - strand at 3037.964 kb on + strand at 3037.965 kb on - strand at 3037.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,035,571 + -3.2 3,035,579 + -0.6 3,035,579 + -0.5 3,035,579 + -1.4 3,035,579 + +1.3 3,035,579 + -0.2 3,035,579 + -1.4 3,035,579 + +1.1 3,035,579 + +0.0 3,035,579 + -0.1 3,035,579 + -0.2 3,035,580 - -1.6 3,035,580 - +1.1 3,035,580 - -0.6 3,035,580 - -1.5 3,035,580 - -1.6 3,035,580 - -1.4 3,035,580 - +0.2 3,035,580 - -0.0 3,035,580 - +0.9 3,035,580 - -1.4 3,035,580 - -1.0 3,035,580 - -0.8 3,035,580 - -0.4 3,035,580 - -1.4 3,035,580 - -2.6 3,035,609 - -1.2 3,035,858 + LRK53_RS13750 0.14 -0.1 3,035,858 + LRK53_RS13750 0.14 +0.0 3,035,858 + LRK53_RS13750 0.14 -1.0 3,035,858 + LRK53_RS13750 0.14 -0.9 3,035,858 + LRK53_RS13750 0.14 -1.0 3,035,858 + LRK53_RS13750 0.14 -0.2 3,035,858 + LRK53_RS13750 0.14 -0.7 3,035,859 - LRK53_RS13750 0.14 -1.5 3,035,859 - LRK53_RS13750 0.14 -1.2 3,035,859 - LRK53_RS13750 0.14 -0.3 3,035,859 - LRK53_RS13750 0.14 -1.0 3,035,859 - LRK53_RS13750 0.14 -0.5 3,035,859 - LRK53_RS13750 0.14 +0.3 3,035,859 - LRK53_RS13750 0.14 -1.0 3,035,859 - LRK53_RS13750 0.14 -0.7 3,035,859 - LRK53_RS13750 0.14 -2.0 3,035,859 - LRK53_RS13750 0.14 +1.6 3,035,859 - LRK53_RS13750 0.14 -0.6 3,035,888 + LRK53_RS13750 0.18 -0.1 3,035,888 + LRK53_RS13750 0.18 -0.4 3,035,889 - LRK53_RS13750 0.19 -1.0 3,035,964 - LRK53_RS13750 0.31 +0.3 3,035,999 + LRK53_RS13750 0.36 -2.0 3,035,999 + LRK53_RS13750 0.36 -0.5 3,035,999 + LRK53_RS13750 0.36 -0.2 3,035,999 + LRK53_RS13750 0.36 -1.3 3,035,999 + LRK53_RS13750 0.36 -1.0 3,035,999 + LRK53_RS13750 0.36 +0.5 3,036,000 - LRK53_RS13750 0.36 -0.8 3,036,000 - LRK53_RS13750 0.36 -1.0 3,036,000 - LRK53_RS13750 0.36 -0.3 3,036,029 + LRK53_RS13750 0.41 +0.1 3,036,098 + LRK53_RS13750 0.52 -1.3 3,036,098 + LRK53_RS13750 0.52 -0.9 3,036,099 - LRK53_RS13750 0.52 +0.1 3,036,099 - LRK53_RS13750 0.52 -0.9 3,036,099 - LRK53_RS13750 0.52 -0.2 3,036,224 + LRK53_RS13750 0.72 +0.1 3,036,225 - LRK53_RS13750 0.73 +0.1 3,036,251 + LRK53_RS13750 0.77 -0.3 3,036,251 + LRK53_RS13750 0.77 +1.1 3,036,251 + LRK53_RS13750 0.77 -1.6 3,036,251 + LRK53_RS13750 0.77 -0.3 3,036,251 + LRK53_RS13750 0.77 +1.3 3,036,251 + LRK53_RS13750 0.77 -0.9 3,036,251 + LRK53_RS13750 0.77 +1.2 3,036,252 - LRK53_RS13750 0.77 -1.3 3,036,252 - LRK53_RS13750 0.77 +0.4 3,036,252 - LRK53_RS13750 0.77 -1.1 3,036,252 - LRK53_RS13750 0.77 +0.9 3,036,582 + LRK53_RS13755 0.27 -0.4 3,036,582 + LRK53_RS13755 0.27 -0.6 3,036,583 - LRK53_RS13755 0.27 -0.6 3,036,583 - LRK53_RS13755 0.27 -0.9 3,036,606 + LRK53_RS13755 0.31 +1.0 3,036,606 + LRK53_RS13755 0.31 -1.4 3,036,606 + LRK53_RS13755 0.31 -1.0 3,036,607 - LRK53_RS13755 0.31 -0.6 3,036,607 - LRK53_RS13755 0.31 +0.3 3,036,607 - LRK53_RS13755 0.31 +0.1 3,036,607 - LRK53_RS13755 0.31 -0.8 3,036,607 - LRK53_RS13755 0.31 +0.4 3,036,630 + LRK53_RS13755 0.35 -0.7 3,036,630 + LRK53_RS13755 0.35 +1.7 3,036,630 + LRK53_RS13755 0.35 -0.2 3,036,630 + LRK53_RS13755 0.35 -0.4 3,036,630 + LRK53_RS13755 0.35 -1.0 3,036,631 - LRK53_RS13755 0.35 -0.7 3,036,631 - LRK53_RS13755 0.35 -1.0 3,036,631 - LRK53_RS13755 0.35 -3.0 3,036,631 - LRK53_RS13755 0.35 -0.6 3,036,631 - LRK53_RS13755 0.35 +0.5 3,036,631 - LRK53_RS13755 0.35 -0.1 3,036,762 + LRK53_RS13755 0.56 -1.6 3,036,762 + LRK53_RS13755 0.56 -0.4 3,036,762 + LRK53_RS13755 0.56 +1.3 3,036,762 + LRK53_RS13755 0.56 +1.8 3,036,762 + LRK53_RS13755 0.56 -0.0 3,036,762 + LRK53_RS13755 0.56 +0.2 3,036,762 + LRK53_RS13755 0.56 -0.0 3,036,762 + LRK53_RS13755 0.56 +0.8 3,036,762 + LRK53_RS13755 0.56 +0.5 3,036,762 + LRK53_RS13755 0.56 +1.1 3,036,762 + LRK53_RS13755 0.56 -0.9 3,036,762 + LRK53_RS13755 0.56 +0.4 3,036,762 + LRK53_RS13755 0.56 -0.5 3,036,762 + LRK53_RS13755 0.56 -1.6 3,036,762 + LRK53_RS13755 0.56 +1.0 3,036,762 + LRK53_RS13755 0.56 -0.1 3,036,762 + LRK53_RS13755 0.56 -1.2 3,036,762 + LRK53_RS13755 0.56 -0.4 3,036,762 + LRK53_RS13755 0.56 +1.1 3,036,762 + LRK53_RS13755 0.56 -0.0 3,036,762 + LRK53_RS13755 0.56 -0.5 3,036,762 + LRK53_RS13755 0.56 +1.3 3,036,762 + LRK53_RS13755 0.56 -1.1 3,036,762 + LRK53_RS13755 0.56 +0.6 3,036,763 - LRK53_RS13755 0.56 -0.1 3,036,763 - LRK53_RS13755 0.56 -0.7 3,036,763 - LRK53_RS13755 0.56 +0.3 3,036,763 - LRK53_RS13755 0.56 -2.6 3,036,763 - LRK53_RS13755 0.56 +0.7 3,036,763 - LRK53_RS13755 0.56 +0.9 3,036,763 - LRK53_RS13755 0.56 -0.1 3,036,763 - LRK53_RS13755 0.56 -0.7 3,036,763 - LRK53_RS13755 0.56 +1.1 3,036,763 - LRK53_RS13755 0.56 -1.2 3,036,763 - LRK53_RS13755 0.56 -1.0 3,036,763 - LRK53_RS13755 0.56 -1.6 3,036,763 - LRK53_RS13755 0.56 -0.8 3,036,763 - LRK53_RS13755 0.56 -2.0 3,036,763 - LRK53_RS13755 0.56 -0.2 3,036,763 - LRK53_RS13755 0.56 -0.7 3,036,763 - LRK53_RS13755 0.56 -0.6 3,036,763 - LRK53_RS13755 0.56 +0.9 3,036,763 - LRK53_RS13755 0.56 -0.3 3,036,763 - LRK53_RS13755 0.56 -0.4 3,036,763 - LRK53_RS13755 0.56 +0.9 3,036,763 - LRK53_RS13755 0.56 -0.3 3,036,763 - LRK53_RS13755 0.56 -0.6 3,036,888 + LRK53_RS13755 0.76 -0.1 3,036,888 + LRK53_RS13755 0.76 +0.3 3,036,888 + LRK53_RS13755 0.76 +1.2 3,036,889 - LRK53_RS13755 0.76 +0.6 3,036,889 - LRK53_RS13755 0.76 -1.9 3,036,889 - LRK53_RS13755 0.76 -2.1 3,036,937 - LRK53_RS13755 0.84 -0.9 3,036,937 - LRK53_RS13755 0.84 +0.0 3,036,937 - LRK53_RS13755 0.84 -2.6 3,037,084 + -0.9 3,037,084 + -1.9 3,037,084 + -1.9 3,037,085 - +0.4 3,037,109 + -0.6 3,037,109 + -0.9 3,037,109 + +0.1 3,037,110 - +2.0 3,037,337 + LRK53_RS13760 0.19 -0.9 3,037,338 - LRK53_RS13760 0.19 -0.7 3,037,555 + LRK53_RS13760 0.57 -0.6 3,037,556 - LRK53_RS13760 0.57 -2.2 3,037,575 - LRK53_RS13760 0.61 +1.6 3,037,603 - LRK53_RS13760 0.65 -0.5 3,037,603 - LRK53_RS13760 0.65 -0.7 3,037,603 - LRK53_RS13760 0.65 -1.5 3,037,711 + LRK53_RS13760 0.84 +1.2 3,037,712 - LRK53_RS13760 0.84 -0.5 3,037,850 + +0.6 3,037,896 + -1.6 3,037,951 + +0.2 3,037,951 + -0.5 3,037,951 + -0.0 3,037,951 + -0.8 3,037,951 + -0.4 3,037,951 + -1.8 3,037,951 + +0.9 3,037,951 + -0.8 3,037,952 - +1.3 3,037,952 - -0.9 3,037,952 - -1.8 3,037,964 + -1.8 3,037,965 - -1.6 3,037,965 - -0.2
Or see this region's nucleotide sequence