Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13075

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13065 and LRK53_RS13070 are separated by 23 nucleotidesLRK53_RS13070 and LRK53_RS13075 are separated by 544 nucleotidesLRK53_RS13075 and LRK53_RS13080 overlap by 4 nucleotides LRK53_RS13065: LRK53_RS13065 - acyl-CoA dehydrogenase family protein, at 2,883,077 to 2,884,846 _RS13065 LRK53_RS13070: LRK53_RS13070 - OsmC family protein, at 2,884,870 to 2,885,283 _RS13070 LRK53_RS13075: LRK53_RS13075 - cytochrome oxidase, at 2,885,828 to 2,886,376 _RS13075 LRK53_RS13080: LRK53_RS13080 - cbb3-type cytochrome c oxidase subunit I, at 2,886,373 to 2,887,860 _RS13080 Position (kb) 2885 2886 2887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2885.056 kb on + strand, within LRK53_RS13070at 2885.056 kb on + strand, within LRK53_RS13070at 2885.056 kb on + strand, within LRK53_RS13070at 2885.056 kb on + strand, within LRK53_RS13070at 2885.056 kb on + strand, within LRK53_RS13070at 2885.057 kb on - strand, within LRK53_RS13070at 2885.057 kb on - strand, within LRK53_RS13070at 2885.057 kb on - strand, within LRK53_RS13070at 2885.057 kb on - strand, within LRK53_RS13070at 2885.057 kb on - strand, within LRK53_RS13070at 2885.292 kb on + strandat 2885.382 kb on + strandat 2885.382 kb on + strandat 2885.382 kb on + strandat 2885.382 kb on + strandat 2885.382 kb on + strandat 2885.382 kb on + strandat 2885.383 kb on - strandat 2885.383 kb on - strandat 2885.383 kb on - strandat 2885.383 kb on - strandat 2885.383 kb on - strandat 2885.383 kb on - strandat 2885.383 kb on - strandat 2885.715 kb on + strandat 2885.715 kb on + strandat 2885.715 kb on + strandat 2885.716 kb on - strandat 2885.788 kb on + strandat 2885.789 kb on - strandat 2885.789 kb on - strandat 2885.789 kb on - strandat 2885.897 kb on + strand, within LRK53_RS13075at 2885.898 kb on - strand, within LRK53_RS13075at 2885.898 kb on - strand, within LRK53_RS13075at 2885.898 kb on - strand, within LRK53_RS13075at 2886.008 kb on - strand, within LRK53_RS13075at 2886.197 kb on + strand, within LRK53_RS13075at 2886.198 kb on - strand, within LRK53_RS13075at 2886.198 kb on - strand, within LRK53_RS13075at 2886.198 kb on - strand, within LRK53_RS13075at 2886.263 kb on + strand, within LRK53_RS13075at 2886.263 kb on + strand, within LRK53_RS13075at 2886.263 kb on + strand, within LRK53_RS13075at 2886.263 kb on + strand, within LRK53_RS13075at 2886.263 kb on + strand, within LRK53_RS13075at 2886.264 kb on - strand, within LRK53_RS13075at 2886.264 kb on - strand, within LRK53_RS13075at 2886.264 kb on - strand, within LRK53_RS13075at 2886.287 kb on + strand, within LRK53_RS13075at 2886.308 kb on + strand, within LRK53_RS13075at 2886.309 kb on - strand, within LRK53_RS13075at 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.442 kb on + strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.443 kb on - strandat 2886.545 kb on - strand, within LRK53_RS13080at 2886.545 kb on - strand, within LRK53_RS13080at 2886.545 kb on - strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.631 kb on + strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.632 kb on - strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.667 kb on + strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.668 kb on - strand, within LRK53_RS13080at 2886.814 kb on + strand, within LRK53_RS13080at 2886.847 kb on + strand, within LRK53_RS13080at 2886.847 kb on + strand, within LRK53_RS13080at 2886.848 kb on - strand, within LRK53_RS13080at 2886.848 kb on - strand, within LRK53_RS13080at 2886.848 kb on - strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.042 kb on + strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.043 kb on - strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.090 kb on + strand, within LRK53_RS13080at 2887.091 kb on - strand, within LRK53_RS13080at 2887.091 kb on - strand, within LRK53_RS13080at 2887.091 kb on - strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.126 kb on + strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.127 kb on - strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.147 kb on + strand, within LRK53_RS13080at 2887.148 kb on - strand, within LRK53_RS13080at 2887.166 kb on - strand, within LRK53_RS13080at 2887.166 kb on - strand, within LRK53_RS13080at 2887.181 kb on - strand, within LRK53_RS13080at 2887.267 kb on + strand, within LRK53_RS13080at 2887.267 kb on + strand, within LRK53_RS13080at 2887.312 kb on + strand, within LRK53_RS13080at 2887.312 kb on + strand, within LRK53_RS13080at 2887.312 kb on + strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.313 kb on - strand, within LRK53_RS13080at 2887.349 kb on - strand, within LRK53_RS13080

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,885,056 + LRK53_RS13070 0.45 -0.3
2,885,056 + LRK53_RS13070 0.45 -0.6
2,885,056 + LRK53_RS13070 0.45 +0.5
2,885,056 + LRK53_RS13070 0.45 -0.5
2,885,056 + LRK53_RS13070 0.45 -0.8
2,885,057 - LRK53_RS13070 0.45 -0.4
2,885,057 - LRK53_RS13070 0.45 -0.4
2,885,057 - LRK53_RS13070 0.45 +2.2
2,885,057 - LRK53_RS13070 0.45 +1.5
2,885,057 - LRK53_RS13070 0.45 -0.8
2,885,292 + -3.8
2,885,382 + -1.6
2,885,382 + +0.3
2,885,382 + -0.4
2,885,382 + -1.7
2,885,382 + -0.6
2,885,382 + +0.4
2,885,383 - -0.2
2,885,383 - +0.4
2,885,383 - +0.7
2,885,383 - +0.2
2,885,383 - -0.9
2,885,383 - -0.0
2,885,383 - +1.2
2,885,715 + +0.4
2,885,715 + -0.3
2,885,715 + -0.2
2,885,716 - -1.3
2,885,788 + -0.9
2,885,789 - +0.2
2,885,789 - +0.5
2,885,789 - +0.9
2,885,897 + LRK53_RS13075 0.13 -0.5
2,885,898 - LRK53_RS13075 0.13 -1.5
2,885,898 - LRK53_RS13075 0.13 -0.0
2,885,898 - LRK53_RS13075 0.13 +0.2
2,886,008 - LRK53_RS13075 0.33 -0.5
2,886,197 + LRK53_RS13075 0.67 +0.2
2,886,198 - LRK53_RS13075 0.67 -1.9
2,886,198 - LRK53_RS13075 0.67 -0.9
2,886,198 - LRK53_RS13075 0.67 +0.0
2,886,263 + LRK53_RS13075 0.79 -1.3
2,886,263 + LRK53_RS13075 0.79 -1.6
2,886,263 + LRK53_RS13075 0.79 -0.6
2,886,263 + LRK53_RS13075 0.79 -0.4
2,886,263 + LRK53_RS13075 0.79 +0.4
2,886,264 - LRK53_RS13075 0.79 -1.4
2,886,264 - LRK53_RS13075 0.79 -1.1
2,886,264 - LRK53_RS13075 0.79 -1.3
2,886,287 + LRK53_RS13075 0.84 -3.3
2,886,308 + LRK53_RS13075 0.87 -0.4
2,886,309 - LRK53_RS13075 0.88 -3.0
2,886,442 + -0.8
2,886,442 + -1.6
2,886,442 + -2.3
2,886,442 + -2.0
2,886,442 + -0.8
2,886,442 + -0.4
2,886,442 + -1.0
2,886,442 + -0.2
2,886,442 + +0.3
2,886,442 + -1.4
2,886,442 + +0.6
2,886,442 + -1.1
2,886,442 + -0.5
2,886,443 - -1.8
2,886,443 - +0.6
2,886,443 - -1.4
2,886,443 - +0.0
2,886,443 - +0.5
2,886,443 - -1.8
2,886,443 - -0.2
2,886,443 - +0.1
2,886,443 - +1.7
2,886,443 - -1.3
2,886,443 - -2.1
2,886,443 - -1.2
2,886,443 - +0.5
2,886,443 - -0.7
2,886,443 - -0.6
2,886,545 - LRK53_RS13080 0.12 -0.0
2,886,545 - LRK53_RS13080 0.12 -1.0
2,886,545 - LRK53_RS13080 0.12 -1.2
2,886,631 + LRK53_RS13080 0.17 +0.2
2,886,631 + LRK53_RS13080 0.17 -1.3
2,886,631 + LRK53_RS13080 0.17 +1.0
2,886,631 + LRK53_RS13080 0.17 +0.5
2,886,631 + LRK53_RS13080 0.17 -0.4
2,886,631 + LRK53_RS13080 0.17 +0.0
2,886,631 + LRK53_RS13080 0.17 -0.7
2,886,631 + LRK53_RS13080 0.17 -0.5
2,886,631 + LRK53_RS13080 0.17 -0.6
2,886,631 + LRK53_RS13080 0.17 +0.4
2,886,631 + LRK53_RS13080 0.17 -1.8
2,886,631 + LRK53_RS13080 0.17 -1.1
2,886,631 + LRK53_RS13080 0.17 -0.6
2,886,632 - LRK53_RS13080 0.17 +0.3
2,886,632 - LRK53_RS13080 0.17 -0.8
2,886,632 - LRK53_RS13080 0.17 -2.2
2,886,632 - LRK53_RS13080 0.17 -1.4
2,886,632 - LRK53_RS13080 0.17 -0.1
2,886,632 - LRK53_RS13080 0.17 +0.2
2,886,632 - LRK53_RS13080 0.17 +0.0
2,886,632 - LRK53_RS13080 0.17 -0.6
2,886,632 - LRK53_RS13080 0.17 -0.1
2,886,632 - LRK53_RS13080 0.17 -0.8
2,886,667 + LRK53_RS13080 0.20 -0.4
2,886,667 + LRK53_RS13080 0.20 +0.4
2,886,667 + LRK53_RS13080 0.20 -0.4
2,886,667 + LRK53_RS13080 0.20 +1.0
2,886,667 + LRK53_RS13080 0.20 +0.1
2,886,667 + LRK53_RS13080 0.20 -0.8
2,886,667 + LRK53_RS13080 0.20 -1.4
2,886,667 + LRK53_RS13080 0.20 -0.5
2,886,667 + LRK53_RS13080 0.20 -0.9
2,886,667 + LRK53_RS13080 0.20 -0.4
2,886,667 + LRK53_RS13080 0.20 +0.1
2,886,667 + LRK53_RS13080 0.20 -2.0
2,886,667 + LRK53_RS13080 0.20 -0.1
2,886,667 + LRK53_RS13080 0.20 +0.8
2,886,667 + LRK53_RS13080 0.20 -2.4
2,886,667 + LRK53_RS13080 0.20 +0.4
2,886,667 + LRK53_RS13080 0.20 -1.0
2,886,667 + LRK53_RS13080 0.20 -0.7
2,886,667 + LRK53_RS13080 0.20 -0.9
2,886,668 - LRK53_RS13080 0.20 -0.8
2,886,668 - LRK53_RS13080 0.20 +0.5
2,886,668 - LRK53_RS13080 0.20 +0.1
2,886,668 - LRK53_RS13080 0.20 +0.2
2,886,668 - LRK53_RS13080 0.20 +0.2
2,886,668 - LRK53_RS13080 0.20 +0.8
2,886,668 - LRK53_RS13080 0.20 -0.4
2,886,668 - LRK53_RS13080 0.20 -0.3
2,886,668 - LRK53_RS13080 0.20 -0.2
2,886,668 - LRK53_RS13080 0.20 +1.2
2,886,668 - LRK53_RS13080 0.20 +0.4
2,886,668 - LRK53_RS13080 0.20 -1.2
2,886,668 - LRK53_RS13080 0.20 -2.1
2,886,668 - LRK53_RS13080 0.20 -0.6
2,886,668 - LRK53_RS13080 0.20 +0.2
2,886,668 - LRK53_RS13080 0.20 -1.7
2,886,668 - LRK53_RS13080 0.20 -1.6
2,886,668 - LRK53_RS13080 0.20 -0.6
2,886,814 + LRK53_RS13080 0.30 -0.4
2,886,847 + LRK53_RS13080 0.32 -0.6
2,886,847 + LRK53_RS13080 0.32 -2.2
2,886,848 - LRK53_RS13080 0.32 -0.4
2,886,848 - LRK53_RS13080 0.32 -0.7
2,886,848 - LRK53_RS13080 0.32 -2.6
2,887,042 + LRK53_RS13080 0.45 -0.3
2,887,042 + LRK53_RS13080 0.45 -1.2
2,887,042 + LRK53_RS13080 0.45 -0.9
2,887,042 + LRK53_RS13080 0.45 +0.5
2,887,043 - LRK53_RS13080 0.45 +1.4
2,887,043 - LRK53_RS13080 0.45 +0.2
2,887,043 - LRK53_RS13080 0.45 +0.1
2,887,043 - LRK53_RS13080 0.45 -0.1
2,887,043 - LRK53_RS13080 0.45 -0.4
2,887,090 + LRK53_RS13080 0.48 +0.6
2,887,090 + LRK53_RS13080 0.48 -1.4
2,887,090 + LRK53_RS13080 0.48 +0.8
2,887,090 + LRK53_RS13080 0.48 +0.1
2,887,090 + LRK53_RS13080 0.48 -0.6
2,887,091 - LRK53_RS13080 0.48 -0.1
2,887,091 - LRK53_RS13080 0.48 -0.5
2,887,091 - LRK53_RS13080 0.48 -1.6
2,887,126 + LRK53_RS13080 0.51 -0.3
2,887,126 + LRK53_RS13080 0.51 -0.3
2,887,126 + LRK53_RS13080 0.51 -0.4
2,887,126 + LRK53_RS13080 0.51 +0.2
2,887,126 + LRK53_RS13080 0.51 -1.5
2,887,126 + LRK53_RS13080 0.51 -1.2
2,887,126 + LRK53_RS13080 0.51 -2.0
2,887,126 + LRK53_RS13080 0.51 +0.1
2,887,126 + LRK53_RS13080 0.51 -0.1
2,887,126 + LRK53_RS13080 0.51 -0.2
2,887,126 + LRK53_RS13080 0.51 +0.1
2,887,126 + LRK53_RS13080 0.51 -1.0
2,887,126 + LRK53_RS13080 0.51 -0.4
2,887,126 + LRK53_RS13080 0.51 -0.7
2,887,126 + LRK53_RS13080 0.51 -0.9
2,887,126 + LRK53_RS13080 0.51 -0.2
2,887,127 - LRK53_RS13080 0.51 -1.4
2,887,127 - LRK53_RS13080 0.51 +1.3
2,887,127 - LRK53_RS13080 0.51 -1.6
2,887,127 - LRK53_RS13080 0.51 +0.8
2,887,127 - LRK53_RS13080 0.51 +0.6
2,887,127 - LRK53_RS13080 0.51 +0.2
2,887,147 + LRK53_RS13080 0.52 -0.2
2,887,147 + LRK53_RS13080 0.52 -0.3
2,887,147 + LRK53_RS13080 0.52 +0.1
2,887,147 + LRK53_RS13080 0.52 +0.1
2,887,148 - LRK53_RS13080 0.52 -0.4
2,887,166 - LRK53_RS13080 0.53 -3.8
2,887,166 - LRK53_RS13080 0.53 -0.0
2,887,181 - LRK53_RS13080 0.54 +0.5
2,887,267 + LRK53_RS13080 0.60 +1.6
2,887,267 + LRK53_RS13080 0.60 -0.6
2,887,312 + LRK53_RS13080 0.63 -0.8
2,887,312 + LRK53_RS13080 0.63 +0.5
2,887,312 + LRK53_RS13080 0.63 +1.2
2,887,313 - LRK53_RS13080 0.63 +0.7
2,887,313 - LRK53_RS13080 0.63 -1.6
2,887,313 - LRK53_RS13080 0.63 -1.0
2,887,313 - LRK53_RS13080 0.63 +0.1
2,887,349 - LRK53_RS13080 0.66 -0.8

Or see this region's nucleotide sequence