Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13065 and LRK53_RS13070 are separated by 23 nucleotides LRK53_RS13070 and LRK53_RS13075 are separated by 544 nucleotides LRK53_RS13075 and LRK53_RS13080 overlap by 4 nucleotides
LRK53_RS13065: LRK53_RS13065 - acyl-CoA dehydrogenase family protein, at 2,883,077 to 2,884,846
_RS13065
LRK53_RS13070: LRK53_RS13070 - OsmC family protein, at 2,884,870 to 2,885,283
_RS13070
LRK53_RS13075: LRK53_RS13075 - cytochrome oxidase, at 2,885,828 to 2,886,376
_RS13075
LRK53_RS13080: LRK53_RS13080 - cbb3-type cytochrome c oxidase subunit I, at 2,886,373 to 2,887,860
_RS13080
Position (kb)
2885
2886
2887 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2885.056 kb on + strand, within LRK53_RS13070 at 2885.056 kb on + strand, within LRK53_RS13070 at 2885.056 kb on + strand, within LRK53_RS13070 at 2885.056 kb on + strand, within LRK53_RS13070 at 2885.056 kb on + strand, within LRK53_RS13070 at 2885.057 kb on - strand, within LRK53_RS13070 at 2885.057 kb on - strand, within LRK53_RS13070 at 2885.057 kb on - strand, within LRK53_RS13070 at 2885.057 kb on - strand, within LRK53_RS13070 at 2885.057 kb on - strand, within LRK53_RS13070 at 2885.292 kb on + strand at 2885.382 kb on + strand at 2885.382 kb on + strand at 2885.382 kb on + strand at 2885.382 kb on + strand at 2885.382 kb on + strand at 2885.382 kb on + strand at 2885.383 kb on - strand at 2885.383 kb on - strand at 2885.383 kb on - strand at 2885.383 kb on - strand at 2885.383 kb on - strand at 2885.383 kb on - strand at 2885.383 kb on - strand at 2885.715 kb on + strand at 2885.715 kb on + strand at 2885.715 kb on + strand at 2885.716 kb on - strand at 2885.788 kb on + strand at 2885.789 kb on - strand at 2885.789 kb on - strand at 2885.789 kb on - strand at 2885.897 kb on + strand, within LRK53_RS13075 at 2885.898 kb on - strand, within LRK53_RS13075 at 2885.898 kb on - strand, within LRK53_RS13075 at 2885.898 kb on - strand, within LRK53_RS13075 at 2886.008 kb on - strand, within LRK53_RS13075 at 2886.197 kb on + strand, within LRK53_RS13075 at 2886.198 kb on - strand, within LRK53_RS13075 at 2886.198 kb on - strand, within LRK53_RS13075 at 2886.198 kb on - strand, within LRK53_RS13075 at 2886.263 kb on + strand, within LRK53_RS13075 at 2886.263 kb on + strand, within LRK53_RS13075 at 2886.263 kb on + strand, within LRK53_RS13075 at 2886.263 kb on + strand, within LRK53_RS13075 at 2886.263 kb on + strand, within LRK53_RS13075 at 2886.264 kb on - strand, within LRK53_RS13075 at 2886.264 kb on - strand, within LRK53_RS13075 at 2886.264 kb on - strand, within LRK53_RS13075 at 2886.287 kb on + strand, within LRK53_RS13075 at 2886.308 kb on + strand, within LRK53_RS13075 at 2886.309 kb on - strand, within LRK53_RS13075 at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.442 kb on + strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.443 kb on - strand at 2886.545 kb on - strand, within LRK53_RS13080 at 2886.545 kb on - strand, within LRK53_RS13080 at 2886.545 kb on - strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.631 kb on + strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.632 kb on - strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.667 kb on + strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.668 kb on - strand, within LRK53_RS13080 at 2886.814 kb on + strand, within LRK53_RS13080 at 2886.847 kb on + strand, within LRK53_RS13080 at 2886.847 kb on + strand, within LRK53_RS13080 at 2886.848 kb on - strand, within LRK53_RS13080 at 2886.848 kb on - strand, within LRK53_RS13080 at 2886.848 kb on - strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.042 kb on + strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.043 kb on - strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.090 kb on + strand, within LRK53_RS13080 at 2887.091 kb on - strand, within LRK53_RS13080 at 2887.091 kb on - strand, within LRK53_RS13080 at 2887.091 kb on - strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.126 kb on + strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.127 kb on - strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.147 kb on + strand, within LRK53_RS13080 at 2887.148 kb on - strand, within LRK53_RS13080 at 2887.166 kb on - strand, within LRK53_RS13080 at 2887.166 kb on - strand, within LRK53_RS13080 at 2887.181 kb on - strand, within LRK53_RS13080 at 2887.267 kb on + strand, within LRK53_RS13080 at 2887.267 kb on + strand, within LRK53_RS13080 at 2887.312 kb on + strand, within LRK53_RS13080 at 2887.312 kb on + strand, within LRK53_RS13080 at 2887.312 kb on + strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.313 kb on - strand, within LRK53_RS13080 at 2887.349 kb on - strand, within LRK53_RS13080
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,885,056 + LRK53_RS13070 0.45 -0.3 2,885,056 + LRK53_RS13070 0.45 -0.6 2,885,056 + LRK53_RS13070 0.45 +0.5 2,885,056 + LRK53_RS13070 0.45 -0.5 2,885,056 + LRK53_RS13070 0.45 -0.8 2,885,057 - LRK53_RS13070 0.45 -0.4 2,885,057 - LRK53_RS13070 0.45 -0.4 2,885,057 - LRK53_RS13070 0.45 +2.2 2,885,057 - LRK53_RS13070 0.45 +1.5 2,885,057 - LRK53_RS13070 0.45 -0.8 2,885,292 + -3.8 2,885,382 + -1.6 2,885,382 + +0.3 2,885,382 + -0.4 2,885,382 + -1.7 2,885,382 + -0.6 2,885,382 + +0.4 2,885,383 - -0.2 2,885,383 - +0.4 2,885,383 - +0.7 2,885,383 - +0.2 2,885,383 - -0.9 2,885,383 - -0.0 2,885,383 - +1.2 2,885,715 + +0.4 2,885,715 + -0.3 2,885,715 + -0.2 2,885,716 - -1.3 2,885,788 + -0.9 2,885,789 - +0.2 2,885,789 - +0.5 2,885,789 - +0.9 2,885,897 + LRK53_RS13075 0.13 -0.5 2,885,898 - LRK53_RS13075 0.13 -1.5 2,885,898 - LRK53_RS13075 0.13 -0.0 2,885,898 - LRK53_RS13075 0.13 +0.2 2,886,008 - LRK53_RS13075 0.33 -0.5 2,886,197 + LRK53_RS13075 0.67 +0.2 2,886,198 - LRK53_RS13075 0.67 -1.9 2,886,198 - LRK53_RS13075 0.67 -0.9 2,886,198 - LRK53_RS13075 0.67 +0.0 2,886,263 + LRK53_RS13075 0.79 -1.3 2,886,263 + LRK53_RS13075 0.79 -1.6 2,886,263 + LRK53_RS13075 0.79 -0.6 2,886,263 + LRK53_RS13075 0.79 -0.4 2,886,263 + LRK53_RS13075 0.79 +0.4 2,886,264 - LRK53_RS13075 0.79 -1.4 2,886,264 - LRK53_RS13075 0.79 -1.1 2,886,264 - LRK53_RS13075 0.79 -1.3 2,886,287 + LRK53_RS13075 0.84 -3.3 2,886,308 + LRK53_RS13075 0.87 -0.4 2,886,309 - LRK53_RS13075 0.88 -3.0 2,886,442 + -0.8 2,886,442 + -1.6 2,886,442 + -2.3 2,886,442 + -2.0 2,886,442 + -0.8 2,886,442 + -0.4 2,886,442 + -1.0 2,886,442 + -0.2 2,886,442 + +0.3 2,886,442 + -1.4 2,886,442 + +0.6 2,886,442 + -1.1 2,886,442 + -0.5 2,886,443 - -1.8 2,886,443 - +0.6 2,886,443 - -1.4 2,886,443 - +0.0 2,886,443 - +0.5 2,886,443 - -1.8 2,886,443 - -0.2 2,886,443 - +0.1 2,886,443 - +1.7 2,886,443 - -1.3 2,886,443 - -2.1 2,886,443 - -1.2 2,886,443 - +0.5 2,886,443 - -0.7 2,886,443 - -0.6 2,886,545 - LRK53_RS13080 0.12 -0.0 2,886,545 - LRK53_RS13080 0.12 -1.0 2,886,545 - LRK53_RS13080 0.12 -1.2 2,886,631 + LRK53_RS13080 0.17 +0.2 2,886,631 + LRK53_RS13080 0.17 -1.3 2,886,631 + LRK53_RS13080 0.17 +1.0 2,886,631 + LRK53_RS13080 0.17 +0.5 2,886,631 + LRK53_RS13080 0.17 -0.4 2,886,631 + LRK53_RS13080 0.17 +0.0 2,886,631 + LRK53_RS13080 0.17 -0.7 2,886,631 + LRK53_RS13080 0.17 -0.5 2,886,631 + LRK53_RS13080 0.17 -0.6 2,886,631 + LRK53_RS13080 0.17 +0.4 2,886,631 + LRK53_RS13080 0.17 -1.8 2,886,631 + LRK53_RS13080 0.17 -1.1 2,886,631 + LRK53_RS13080 0.17 -0.6 2,886,632 - LRK53_RS13080 0.17 +0.3 2,886,632 - LRK53_RS13080 0.17 -0.8 2,886,632 - LRK53_RS13080 0.17 -2.2 2,886,632 - LRK53_RS13080 0.17 -1.4 2,886,632 - LRK53_RS13080 0.17 -0.1 2,886,632 - LRK53_RS13080 0.17 +0.2 2,886,632 - LRK53_RS13080 0.17 +0.0 2,886,632 - LRK53_RS13080 0.17 -0.6 2,886,632 - LRK53_RS13080 0.17 -0.1 2,886,632 - LRK53_RS13080 0.17 -0.8 2,886,667 + LRK53_RS13080 0.20 -0.4 2,886,667 + LRK53_RS13080 0.20 +0.4 2,886,667 + LRK53_RS13080 0.20 -0.4 2,886,667 + LRK53_RS13080 0.20 +1.0 2,886,667 + LRK53_RS13080 0.20 +0.1 2,886,667 + LRK53_RS13080 0.20 -0.8 2,886,667 + LRK53_RS13080 0.20 -1.4 2,886,667 + LRK53_RS13080 0.20 -0.5 2,886,667 + LRK53_RS13080 0.20 -0.9 2,886,667 + LRK53_RS13080 0.20 -0.4 2,886,667 + LRK53_RS13080 0.20 +0.1 2,886,667 + LRK53_RS13080 0.20 -2.0 2,886,667 + LRK53_RS13080 0.20 -0.1 2,886,667 + LRK53_RS13080 0.20 +0.8 2,886,667 + LRK53_RS13080 0.20 -2.4 2,886,667 + LRK53_RS13080 0.20 +0.4 2,886,667 + LRK53_RS13080 0.20 -1.0 2,886,667 + LRK53_RS13080 0.20 -0.7 2,886,667 + LRK53_RS13080 0.20 -0.9 2,886,668 - LRK53_RS13080 0.20 -0.8 2,886,668 - LRK53_RS13080 0.20 +0.5 2,886,668 - LRK53_RS13080 0.20 +0.1 2,886,668 - LRK53_RS13080 0.20 +0.2 2,886,668 - LRK53_RS13080 0.20 +0.2 2,886,668 - LRK53_RS13080 0.20 +0.8 2,886,668 - LRK53_RS13080 0.20 -0.4 2,886,668 - LRK53_RS13080 0.20 -0.3 2,886,668 - LRK53_RS13080 0.20 -0.2 2,886,668 - LRK53_RS13080 0.20 +1.2 2,886,668 - LRK53_RS13080 0.20 +0.4 2,886,668 - LRK53_RS13080 0.20 -1.2 2,886,668 - LRK53_RS13080 0.20 -2.1 2,886,668 - LRK53_RS13080 0.20 -0.6 2,886,668 - LRK53_RS13080 0.20 +0.2 2,886,668 - LRK53_RS13080 0.20 -1.7 2,886,668 - LRK53_RS13080 0.20 -1.6 2,886,668 - LRK53_RS13080 0.20 -0.6 2,886,814 + LRK53_RS13080 0.30 -0.4 2,886,847 + LRK53_RS13080 0.32 -0.6 2,886,847 + LRK53_RS13080 0.32 -2.2 2,886,848 - LRK53_RS13080 0.32 -0.4 2,886,848 - LRK53_RS13080 0.32 -0.7 2,886,848 - LRK53_RS13080 0.32 -2.6 2,887,042 + LRK53_RS13080 0.45 -0.3 2,887,042 + LRK53_RS13080 0.45 -1.2 2,887,042 + LRK53_RS13080 0.45 -0.9 2,887,042 + LRK53_RS13080 0.45 +0.5 2,887,043 - LRK53_RS13080 0.45 +1.4 2,887,043 - LRK53_RS13080 0.45 +0.2 2,887,043 - LRK53_RS13080 0.45 +0.1 2,887,043 - LRK53_RS13080 0.45 -0.1 2,887,043 - LRK53_RS13080 0.45 -0.4 2,887,090 + LRK53_RS13080 0.48 +0.6 2,887,090 + LRK53_RS13080 0.48 -1.4 2,887,090 + LRK53_RS13080 0.48 +0.8 2,887,090 + LRK53_RS13080 0.48 +0.1 2,887,090 + LRK53_RS13080 0.48 -0.6 2,887,091 - LRK53_RS13080 0.48 -0.1 2,887,091 - LRK53_RS13080 0.48 -0.5 2,887,091 - LRK53_RS13080 0.48 -1.6 2,887,126 + LRK53_RS13080 0.51 -0.3 2,887,126 + LRK53_RS13080 0.51 -0.3 2,887,126 + LRK53_RS13080 0.51 -0.4 2,887,126 + LRK53_RS13080 0.51 +0.2 2,887,126 + LRK53_RS13080 0.51 -1.5 2,887,126 + LRK53_RS13080 0.51 -1.2 2,887,126 + LRK53_RS13080 0.51 -2.0 2,887,126 + LRK53_RS13080 0.51 +0.1 2,887,126 + LRK53_RS13080 0.51 -0.1 2,887,126 + LRK53_RS13080 0.51 -0.2 2,887,126 + LRK53_RS13080 0.51 +0.1 2,887,126 + LRK53_RS13080 0.51 -1.0 2,887,126 + LRK53_RS13080 0.51 -0.4 2,887,126 + LRK53_RS13080 0.51 -0.7 2,887,126 + LRK53_RS13080 0.51 -0.9 2,887,126 + LRK53_RS13080 0.51 -0.2 2,887,127 - LRK53_RS13080 0.51 -1.4 2,887,127 - LRK53_RS13080 0.51 +1.3 2,887,127 - LRK53_RS13080 0.51 -1.6 2,887,127 - LRK53_RS13080 0.51 +0.8 2,887,127 - LRK53_RS13080 0.51 +0.6 2,887,127 - LRK53_RS13080 0.51 +0.2 2,887,147 + LRK53_RS13080 0.52 -0.2 2,887,147 + LRK53_RS13080 0.52 -0.3 2,887,147 + LRK53_RS13080 0.52 +0.1 2,887,147 + LRK53_RS13080 0.52 +0.1 2,887,148 - LRK53_RS13080 0.52 -0.4 2,887,166 - LRK53_RS13080 0.53 -3.8 2,887,166 - LRK53_RS13080 0.53 -0.0 2,887,181 - LRK53_RS13080 0.54 +0.5 2,887,267 + LRK53_RS13080 0.60 +1.6 2,887,267 + LRK53_RS13080 0.60 -0.6 2,887,312 + LRK53_RS13080 0.63 -0.8 2,887,312 + LRK53_RS13080 0.63 +0.5 2,887,312 + LRK53_RS13080 0.63 +1.2 2,887,313 - LRK53_RS13080 0.63 +0.7 2,887,313 - LRK53_RS13080 0.63 -1.6 2,887,313 - LRK53_RS13080 0.63 -1.0 2,887,313 - LRK53_RS13080 0.63 +0.1 2,887,349 - LRK53_RS13080 0.66 -0.8
Or see this region's nucleotide sequence