Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11580

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11575 and LRK53_RS11580 are separated by 86 nucleotidesLRK53_RS11580 and LRK53_RS11585 overlap by 4 nucleotides LRK53_RS11575: LRK53_RS11575 - cation:proton antiporter, at 2,575,622 to 2,576,827 _RS11575 LRK53_RS11580: LRK53_RS11580 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 2,576,914 to 2,578,329 _RS11580 LRK53_RS11585: LRK53_RS11585 - acetate/propionate family kinase, at 2,578,326 to 2,579,519 _RS11585 Position (kb) 2576 2577 2578 2579Strain fitness (log2 ratio) -2 -1 0 1 2at 2576.860 kb on + strandat 2576.861 kb on - strandat 2577.047 kb on - strandat 2577.376 kb on + strand, within LRK53_RS11580at 2577.377 kb on - strand, within LRK53_RS11580at 2577.377 kb on - strand, within LRK53_RS11580at 2577.784 kb on + strand, within LRK53_RS11580at 2577.784 kb on + strand, within LRK53_RS11580at 2577.785 kb on - strand, within LRK53_RS11580at 2577.785 kb on - strand, within LRK53_RS11580at 2577.785 kb on - strand, within LRK53_RS11580at 2577.785 kb on - strand, within LRK53_RS11580at 2577.806 kb on - strand, within LRK53_RS11580at 2578.136 kb on + strand, within LRK53_RS11580at 2578.180 kb on + strand, within LRK53_RS11580at 2578.180 kb on + strand, within LRK53_RS11580at 2578.180 kb on + strand, within LRK53_RS11580at 2578.181 kb on - strand, within LRK53_RS11580at 2578.181 kb on - strand, within LRK53_RS11580at 2578.181 kb on - strand, within LRK53_RS11580at 2578.181 kb on - strand, within LRK53_RS11580at 2578.181 kb on - strand, within LRK53_RS11580at 2578.469 kb on + strand, within LRK53_RS11585at 2578.469 kb on + strand, within LRK53_RS11585at 2578.533 kb on + strand, within LRK53_RS11585at 2578.534 kb on - strand, within LRK53_RS11585at 2578.551 kb on + strand, within LRK53_RS11585at 2578.551 kb on + strand, within LRK53_RS11585at 2578.551 kb on + strand, within LRK53_RS11585at 2578.551 kb on + strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.552 kb on - strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.635 kb on + strand, within LRK53_RS11585at 2578.636 kb on - strand, within LRK53_RS11585at 2578.636 kb on - strand, within LRK53_RS11585at 2578.636 kb on - strand, within LRK53_RS11585at 2578.636 kb on - strand, within LRK53_RS11585at 2578.636 kb on - strand, within LRK53_RS11585at 2578.636 kb on - strand, within LRK53_RS11585at 2578.636 kb on - strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.686 kb on + strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.687 kb on - strand, within LRK53_RS11585at 2578.689 kb on - strand, within LRK53_RS11585at 2578.689 kb on - strand, within LRK53_RS11585at 2578.753 kb on + strand, within LRK53_RS11585at 2578.754 kb on - strand, within LRK53_RS11585at 2578.754 kb on - strand, within LRK53_RS11585at 2578.754 kb on - strand, within LRK53_RS11585at 2578.754 kb on - strand, within LRK53_RS11585at 2578.754 kb on - strand, within LRK53_RS11585at 2578.887 kb on + strand, within LRK53_RS11585at 2578.887 kb on + strand, within LRK53_RS11585at 2578.888 kb on - strand, within LRK53_RS11585at 2578.888 kb on - strand, within LRK53_RS11585at 2578.894 kb on - strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.088 kb on + strand, within LRK53_RS11585at 2579.089 kb on - strand, within LRK53_RS11585at 2579.089 kb on - strand, within LRK53_RS11585at 2579.089 kb on - strand, within LRK53_RS11585at 2579.089 kb on - strand, within LRK53_RS11585at 2579.139 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.241 kb on + strand, within LRK53_RS11585at 2579.242 kb on - strand, within LRK53_RS11585at 2579.242 kb on - strand, within LRK53_RS11585at 2579.242 kb on - strand, within LRK53_RS11585at 2579.242 kb on - strand, within LRK53_RS11585at 2579.242 kb on - strand, within LRK53_RS11585at 2579.242 kb on - strand, within LRK53_RS11585

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,576,860 + -0.2
2,576,861 - +0.7
2,577,047 - -0.5
2,577,376 + LRK53_RS11580 0.33 -0.8
2,577,377 - LRK53_RS11580 0.33 -1.5
2,577,377 - LRK53_RS11580 0.33 -0.1
2,577,784 + LRK53_RS11580 0.61 -1.6
2,577,784 + LRK53_RS11580 0.61 -0.6
2,577,785 - LRK53_RS11580 0.62 -1.3
2,577,785 - LRK53_RS11580 0.62 -1.1
2,577,785 - LRK53_RS11580 0.62 -1.3
2,577,785 - LRK53_RS11580 0.62 -1.6
2,577,806 - LRK53_RS11580 0.63 -0.9
2,578,136 + LRK53_RS11580 0.86 -0.8
2,578,180 + LRK53_RS11580 0.89 +0.5
2,578,180 + LRK53_RS11580 0.89 +0.5
2,578,180 + LRK53_RS11580 0.89 -0.3
2,578,181 - LRK53_RS11580 0.89 +0.3
2,578,181 - LRK53_RS11580 0.89 -0.1
2,578,181 - LRK53_RS11580 0.89 -0.9
2,578,181 - LRK53_RS11580 0.89 -2.1
2,578,181 - LRK53_RS11580 0.89 +0.3
2,578,469 + LRK53_RS11585 0.12 -0.7
2,578,469 + LRK53_RS11585 0.12 -0.4
2,578,533 + LRK53_RS11585 0.17 -1.2
2,578,534 - LRK53_RS11585 0.17 +0.7
2,578,551 + LRK53_RS11585 0.19 -0.1
2,578,551 + LRK53_RS11585 0.19 -0.6
2,578,551 + LRK53_RS11585 0.19 -0.5
2,578,551 + LRK53_RS11585 0.19 -0.3
2,578,552 - LRK53_RS11585 0.19 -1.8
2,578,552 - LRK53_RS11585 0.19 -0.6
2,578,552 - LRK53_RS11585 0.19 -1.8
2,578,552 - LRK53_RS11585 0.19 +1.2
2,578,552 - LRK53_RS11585 0.19 -1.3
2,578,552 - LRK53_RS11585 0.19 -0.3
2,578,552 - LRK53_RS11585 0.19 +1.0
2,578,552 - LRK53_RS11585 0.19 -1.8
2,578,635 + LRK53_RS11585 0.26 +1.2
2,578,635 + LRK53_RS11585 0.26 -0.3
2,578,635 + LRK53_RS11585 0.26 +0.9
2,578,635 + LRK53_RS11585 0.26 +0.4
2,578,635 + LRK53_RS11585 0.26 +0.3
2,578,635 + LRK53_RS11585 0.26 -1.0
2,578,635 + LRK53_RS11585 0.26 +0.5
2,578,635 + LRK53_RS11585 0.26 -1.9
2,578,635 + LRK53_RS11585 0.26 -0.9
2,578,635 + LRK53_RS11585 0.26 -1.1
2,578,636 - LRK53_RS11585 0.26 -0.3
2,578,636 - LRK53_RS11585 0.26 +0.2
2,578,636 - LRK53_RS11585 0.26 -1.4
2,578,636 - LRK53_RS11585 0.26 -0.5
2,578,636 - LRK53_RS11585 0.26 -0.5
2,578,636 - LRK53_RS11585 0.26 -0.9
2,578,636 - LRK53_RS11585 0.26 +0.3
2,578,686 + LRK53_RS11585 0.30 +0.9
2,578,686 + LRK53_RS11585 0.30 -0.0
2,578,686 + LRK53_RS11585 0.30 +1.0
2,578,686 + LRK53_RS11585 0.30 +0.5
2,578,686 + LRK53_RS11585 0.30 -2.3
2,578,686 + LRK53_RS11585 0.30 +0.5
2,578,686 + LRK53_RS11585 0.30 +0.4
2,578,686 + LRK53_RS11585 0.30 +2.6
2,578,686 + LRK53_RS11585 0.30 -0.9
2,578,686 + LRK53_RS11585 0.30 -1.1
2,578,686 + LRK53_RS11585 0.30 -0.7
2,578,686 + LRK53_RS11585 0.30 -0.2
2,578,686 + LRK53_RS11585 0.30 -1.1
2,578,687 - LRK53_RS11585 0.30 -1.4
2,578,687 - LRK53_RS11585 0.30 -1.0
2,578,687 - LRK53_RS11585 0.30 -0.1
2,578,687 - LRK53_RS11585 0.30 -0.8
2,578,687 - LRK53_RS11585 0.30 -0.7
2,578,687 - LRK53_RS11585 0.30 -0.9
2,578,687 - LRK53_RS11585 0.30 -0.5
2,578,687 - LRK53_RS11585 0.30 -1.5
2,578,687 - LRK53_RS11585 0.30 -0.8
2,578,687 - LRK53_RS11585 0.30 -0.8
2,578,687 - LRK53_RS11585 0.30 +0.3
2,578,687 - LRK53_RS11585 0.30 -0.3
2,578,687 - LRK53_RS11585 0.30 +0.1
2,578,689 - LRK53_RS11585 0.30 -0.3
2,578,689 - LRK53_RS11585 0.30 -1.2
2,578,753 + LRK53_RS11585 0.36 -0.7
2,578,754 - LRK53_RS11585 0.36 +0.0
2,578,754 - LRK53_RS11585 0.36 -1.1
2,578,754 - LRK53_RS11585 0.36 -1.7
2,578,754 - LRK53_RS11585 0.36 -0.7
2,578,754 - LRK53_RS11585 0.36 +0.5
2,578,887 + LRK53_RS11585 0.47 -0.1
2,578,887 + LRK53_RS11585 0.47 -1.0
2,578,888 - LRK53_RS11585 0.47 -0.6
2,578,888 - LRK53_RS11585 0.47 -0.1
2,578,894 - LRK53_RS11585 0.48 -2.2
2,579,088 + LRK53_RS11585 0.64 -0.5
2,579,088 + LRK53_RS11585 0.64 -0.5
2,579,088 + LRK53_RS11585 0.64 -1.4
2,579,088 + LRK53_RS11585 0.64 -0.2
2,579,088 + LRK53_RS11585 0.64 -1.6
2,579,088 + LRK53_RS11585 0.64 -0.7
2,579,088 + LRK53_RS11585 0.64 +0.7
2,579,088 + LRK53_RS11585 0.64 -0.6
2,579,088 + LRK53_RS11585 0.64 -1.1
2,579,088 + LRK53_RS11585 0.64 -1.0
2,579,089 - LRK53_RS11585 0.64 +0.4
2,579,089 - LRK53_RS11585 0.64 -0.6
2,579,089 - LRK53_RS11585 0.64 -0.6
2,579,089 - LRK53_RS11585 0.64 +0.3
2,579,139 + LRK53_RS11585 0.68 -0.6
2,579,241 + LRK53_RS11585 0.77 -0.7
2,579,241 + LRK53_RS11585 0.77 +0.3
2,579,241 + LRK53_RS11585 0.77 -2.4
2,579,241 + LRK53_RS11585 0.77 -1.0
2,579,241 + LRK53_RS11585 0.77 +0.2
2,579,241 + LRK53_RS11585 0.77 -1.5
2,579,241 + LRK53_RS11585 0.77 -1.1
2,579,241 + LRK53_RS11585 0.77 -0.2
2,579,241 + LRK53_RS11585 0.77 -0.7
2,579,241 + LRK53_RS11585 0.77 -1.0
2,579,241 + LRK53_RS11585 0.77 -0.8
2,579,242 - LRK53_RS11585 0.77 -0.8
2,579,242 - LRK53_RS11585 0.77 +0.7
2,579,242 - LRK53_RS11585 0.77 -1.4
2,579,242 - LRK53_RS11585 0.77 -1.2
2,579,242 - LRK53_RS11585 0.77 -0.5
2,579,242 - LRK53_RS11585 0.77 +0.6

Or see this region's nucleotide sequence