Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11575 and LRK53_RS11580 are separated by 86 nucleotides LRK53_RS11580 and LRK53_RS11585 overlap by 4 nucleotides
LRK53_RS11575: LRK53_RS11575 - cation:proton antiporter, at 2,575,622 to 2,576,827
_RS11575
LRK53_RS11580: LRK53_RS11580 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 2,576,914 to 2,578,329
_RS11580
LRK53_RS11585: LRK53_RS11585 - acetate/propionate family kinase, at 2,578,326 to 2,579,519
_RS11585
Position (kb)
2576
2577
2578
2579 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2576.860 kb on + strand at 2576.861 kb on - strand at 2577.047 kb on - strand at 2577.376 kb on + strand, within LRK53_RS11580 at 2577.377 kb on - strand, within LRK53_RS11580 at 2577.377 kb on - strand, within LRK53_RS11580 at 2577.784 kb on + strand, within LRK53_RS11580 at 2577.784 kb on + strand, within LRK53_RS11580 at 2577.785 kb on - strand, within LRK53_RS11580 at 2577.785 kb on - strand, within LRK53_RS11580 at 2577.785 kb on - strand, within LRK53_RS11580 at 2577.785 kb on - strand, within LRK53_RS11580 at 2577.806 kb on - strand, within LRK53_RS11580 at 2578.136 kb on + strand, within LRK53_RS11580 at 2578.180 kb on + strand, within LRK53_RS11580 at 2578.180 kb on + strand, within LRK53_RS11580 at 2578.180 kb on + strand, within LRK53_RS11580 at 2578.181 kb on - strand, within LRK53_RS11580 at 2578.181 kb on - strand, within LRK53_RS11580 at 2578.181 kb on - strand, within LRK53_RS11580 at 2578.181 kb on - strand, within LRK53_RS11580 at 2578.181 kb on - strand, within LRK53_RS11580 at 2578.469 kb on + strand, within LRK53_RS11585 at 2578.469 kb on + strand, within LRK53_RS11585 at 2578.533 kb on + strand, within LRK53_RS11585 at 2578.534 kb on - strand, within LRK53_RS11585 at 2578.551 kb on + strand, within LRK53_RS11585 at 2578.551 kb on + strand, within LRK53_RS11585 at 2578.551 kb on + strand, within LRK53_RS11585 at 2578.551 kb on + strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.552 kb on - strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.635 kb on + strand, within LRK53_RS11585 at 2578.636 kb on - strand, within LRK53_RS11585 at 2578.636 kb on - strand, within LRK53_RS11585 at 2578.636 kb on - strand, within LRK53_RS11585 at 2578.636 kb on - strand, within LRK53_RS11585 at 2578.636 kb on - strand, within LRK53_RS11585 at 2578.636 kb on - strand, within LRK53_RS11585 at 2578.636 kb on - strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.686 kb on + strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.687 kb on - strand, within LRK53_RS11585 at 2578.689 kb on - strand, within LRK53_RS11585 at 2578.689 kb on - strand, within LRK53_RS11585 at 2578.753 kb on + strand, within LRK53_RS11585 at 2578.754 kb on - strand, within LRK53_RS11585 at 2578.754 kb on - strand, within LRK53_RS11585 at 2578.754 kb on - strand, within LRK53_RS11585 at 2578.754 kb on - strand, within LRK53_RS11585 at 2578.754 kb on - strand, within LRK53_RS11585 at 2578.887 kb on + strand, within LRK53_RS11585 at 2578.887 kb on + strand, within LRK53_RS11585 at 2578.888 kb on - strand, within LRK53_RS11585 at 2578.888 kb on - strand, within LRK53_RS11585 at 2578.894 kb on - strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.088 kb on + strand, within LRK53_RS11585 at 2579.089 kb on - strand, within LRK53_RS11585 at 2579.089 kb on - strand, within LRK53_RS11585 at 2579.089 kb on - strand, within LRK53_RS11585 at 2579.089 kb on - strand, within LRK53_RS11585 at 2579.139 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.241 kb on + strand, within LRK53_RS11585 at 2579.242 kb on - strand, within LRK53_RS11585 at 2579.242 kb on - strand, within LRK53_RS11585 at 2579.242 kb on - strand, within LRK53_RS11585 at 2579.242 kb on - strand, within LRK53_RS11585 at 2579.242 kb on - strand, within LRK53_RS11585 at 2579.242 kb on - strand, within LRK53_RS11585
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,576,860 + -0.2 2,576,861 - +0.7 2,577,047 - -0.5 2,577,376 + LRK53_RS11580 0.33 -0.8 2,577,377 - LRK53_RS11580 0.33 -1.5 2,577,377 - LRK53_RS11580 0.33 -0.1 2,577,784 + LRK53_RS11580 0.61 -1.6 2,577,784 + LRK53_RS11580 0.61 -0.6 2,577,785 - LRK53_RS11580 0.62 -1.3 2,577,785 - LRK53_RS11580 0.62 -1.1 2,577,785 - LRK53_RS11580 0.62 -1.3 2,577,785 - LRK53_RS11580 0.62 -1.6 2,577,806 - LRK53_RS11580 0.63 -0.9 2,578,136 + LRK53_RS11580 0.86 -0.8 2,578,180 + LRK53_RS11580 0.89 +0.5 2,578,180 + LRK53_RS11580 0.89 +0.5 2,578,180 + LRK53_RS11580 0.89 -0.3 2,578,181 - LRK53_RS11580 0.89 +0.3 2,578,181 - LRK53_RS11580 0.89 -0.1 2,578,181 - LRK53_RS11580 0.89 -0.9 2,578,181 - LRK53_RS11580 0.89 -2.1 2,578,181 - LRK53_RS11580 0.89 +0.3 2,578,469 + LRK53_RS11585 0.12 -0.7 2,578,469 + LRK53_RS11585 0.12 -0.4 2,578,533 + LRK53_RS11585 0.17 -1.2 2,578,534 - LRK53_RS11585 0.17 +0.7 2,578,551 + LRK53_RS11585 0.19 -0.1 2,578,551 + LRK53_RS11585 0.19 -0.6 2,578,551 + LRK53_RS11585 0.19 -0.5 2,578,551 + LRK53_RS11585 0.19 -0.3 2,578,552 - LRK53_RS11585 0.19 -1.8 2,578,552 - LRK53_RS11585 0.19 -0.6 2,578,552 - LRK53_RS11585 0.19 -1.8 2,578,552 - LRK53_RS11585 0.19 +1.2 2,578,552 - LRK53_RS11585 0.19 -1.3 2,578,552 - LRK53_RS11585 0.19 -0.3 2,578,552 - LRK53_RS11585 0.19 +1.0 2,578,552 - LRK53_RS11585 0.19 -1.8 2,578,635 + LRK53_RS11585 0.26 +1.2 2,578,635 + LRK53_RS11585 0.26 -0.3 2,578,635 + LRK53_RS11585 0.26 +0.9 2,578,635 + LRK53_RS11585 0.26 +0.4 2,578,635 + LRK53_RS11585 0.26 +0.3 2,578,635 + LRK53_RS11585 0.26 -1.0 2,578,635 + LRK53_RS11585 0.26 +0.5 2,578,635 + LRK53_RS11585 0.26 -1.9 2,578,635 + LRK53_RS11585 0.26 -0.9 2,578,635 + LRK53_RS11585 0.26 -1.1 2,578,636 - LRK53_RS11585 0.26 -0.3 2,578,636 - LRK53_RS11585 0.26 +0.2 2,578,636 - LRK53_RS11585 0.26 -1.4 2,578,636 - LRK53_RS11585 0.26 -0.5 2,578,636 - LRK53_RS11585 0.26 -0.5 2,578,636 - LRK53_RS11585 0.26 -0.9 2,578,636 - LRK53_RS11585 0.26 +0.3 2,578,686 + LRK53_RS11585 0.30 +0.9 2,578,686 + LRK53_RS11585 0.30 -0.0 2,578,686 + LRK53_RS11585 0.30 +1.0 2,578,686 + LRK53_RS11585 0.30 +0.5 2,578,686 + LRK53_RS11585 0.30 -2.3 2,578,686 + LRK53_RS11585 0.30 +0.5 2,578,686 + LRK53_RS11585 0.30 +0.4 2,578,686 + LRK53_RS11585 0.30 +2.6 2,578,686 + LRK53_RS11585 0.30 -0.9 2,578,686 + LRK53_RS11585 0.30 -1.1 2,578,686 + LRK53_RS11585 0.30 -0.7 2,578,686 + LRK53_RS11585 0.30 -0.2 2,578,686 + LRK53_RS11585 0.30 -1.1 2,578,687 - LRK53_RS11585 0.30 -1.4 2,578,687 - LRK53_RS11585 0.30 -1.0 2,578,687 - LRK53_RS11585 0.30 -0.1 2,578,687 - LRK53_RS11585 0.30 -0.8 2,578,687 - LRK53_RS11585 0.30 -0.7 2,578,687 - LRK53_RS11585 0.30 -0.9 2,578,687 - LRK53_RS11585 0.30 -0.5 2,578,687 - LRK53_RS11585 0.30 -1.5 2,578,687 - LRK53_RS11585 0.30 -0.8 2,578,687 - LRK53_RS11585 0.30 -0.8 2,578,687 - LRK53_RS11585 0.30 +0.3 2,578,687 - LRK53_RS11585 0.30 -0.3 2,578,687 - LRK53_RS11585 0.30 +0.1 2,578,689 - LRK53_RS11585 0.30 -0.3 2,578,689 - LRK53_RS11585 0.30 -1.2 2,578,753 + LRK53_RS11585 0.36 -0.7 2,578,754 - LRK53_RS11585 0.36 +0.0 2,578,754 - LRK53_RS11585 0.36 -1.1 2,578,754 - LRK53_RS11585 0.36 -1.7 2,578,754 - LRK53_RS11585 0.36 -0.7 2,578,754 - LRK53_RS11585 0.36 +0.5 2,578,887 + LRK53_RS11585 0.47 -0.1 2,578,887 + LRK53_RS11585 0.47 -1.0 2,578,888 - LRK53_RS11585 0.47 -0.6 2,578,888 - LRK53_RS11585 0.47 -0.1 2,578,894 - LRK53_RS11585 0.48 -2.2 2,579,088 + LRK53_RS11585 0.64 -0.5 2,579,088 + LRK53_RS11585 0.64 -0.5 2,579,088 + LRK53_RS11585 0.64 -1.4 2,579,088 + LRK53_RS11585 0.64 -0.2 2,579,088 + LRK53_RS11585 0.64 -1.6 2,579,088 + LRK53_RS11585 0.64 -0.7 2,579,088 + LRK53_RS11585 0.64 +0.7 2,579,088 + LRK53_RS11585 0.64 -0.6 2,579,088 + LRK53_RS11585 0.64 -1.1 2,579,088 + LRK53_RS11585 0.64 -1.0 2,579,089 - LRK53_RS11585 0.64 +0.4 2,579,089 - LRK53_RS11585 0.64 -0.6 2,579,089 - LRK53_RS11585 0.64 -0.6 2,579,089 - LRK53_RS11585 0.64 +0.3 2,579,139 + LRK53_RS11585 0.68 -0.6 2,579,241 + LRK53_RS11585 0.77 -0.7 2,579,241 + LRK53_RS11585 0.77 +0.3 2,579,241 + LRK53_RS11585 0.77 -2.4 2,579,241 + LRK53_RS11585 0.77 -1.0 2,579,241 + LRK53_RS11585 0.77 +0.2 2,579,241 + LRK53_RS11585 0.77 -1.5 2,579,241 + LRK53_RS11585 0.77 -1.1 2,579,241 + LRK53_RS11585 0.77 -0.2 2,579,241 + LRK53_RS11585 0.77 -0.7 2,579,241 + LRK53_RS11585 0.77 -1.0 2,579,241 + LRK53_RS11585 0.77 -0.8 2,579,242 - LRK53_RS11585 0.77 -0.8 2,579,242 - LRK53_RS11585 0.77 +0.7 2,579,242 - LRK53_RS11585 0.77 -1.4 2,579,242 - LRK53_RS11585 0.77 -1.2 2,579,242 - LRK53_RS11585 0.77 -0.5 2,579,242 - LRK53_RS11585 0.77 +0.6
Or see this region's nucleotide sequence