Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11255 and LRK53_RS11260 overlap by 11 nucleotides LRK53_RS11260 and LRK53_RS11265 overlap by 20 nucleotides LRK53_RS11265 and LRK53_RS11270 are separated by 65 nucleotides LRK53_RS11270 and LRK53_RS11275 are separated by 11 nucleotides LRK53_RS11275 and LRK53_RS11280 are separated by 255 nucleotides LRK53_RS11280 and LRK53_RS11285 are separated by 227 nucleotides
LRK53_RS11255: LRK53_RS11255 - DNA oxidative demethylase AlkB, at 2,512,745 to 2,513,401
_RS11255
LRK53_RS11260: LRK53_RS11260 - DNA-3-methyladenine glycosylase, at 2,513,391 to 2,514,023
_RS11260
LRK53_RS11265: LRK53_RS11265 - hypothetical protein, at 2,514,004 to 2,514,189
_RS11265
LRK53_RS11270: LRK53_RS11270 - MBL fold metallo-hydrolase, at 2,514,255 to 2,515,196
_RS11270
LRK53_RS11275: LRK53_RS11275 - hypothetical protein, at 2,515,208 to 2,515,357
_RS11275
LRK53_RS11280: LRK53_RS11280 - MBL fold metallo-hydrolase, at 2,515,613 to 2,515,960
_RS11280
LRK53_RS11285: LRK53_RS11285 - tRNA-binding protein, at 2,516,188 to 2,516,535
_RS11285
Position (kb)
2514
2515
2516 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2513.499 kb on + strand, within LRK53_RS11260 at 2513.512 kb on + strand, within LRK53_RS11260 at 2513.512 kb on + strand, within LRK53_RS11260 at 2513.513 kb on - strand, within LRK53_RS11260 at 2513.513 kb on - strand, within LRK53_RS11260 at 2513.513 kb on - strand, within LRK53_RS11260 at 2513.513 kb on - strand, within LRK53_RS11260 at 2513.526 kb on + strand, within LRK53_RS11260 at 2513.527 kb on - strand, within LRK53_RS11260 at 2513.527 kb on - strand, within LRK53_RS11260 at 2513.527 kb on - strand, within LRK53_RS11260 at 2513.820 kb on + strand, within LRK53_RS11260 at 2513.821 kb on - strand, within LRK53_RS11260 at 2513.821 kb on - strand, within LRK53_RS11260 at 2513.821 kb on - strand, within LRK53_RS11260 at 2513.821 kb on - strand, within LRK53_RS11260 at 2513.821 kb on - strand, within LRK53_RS11260 at 2513.821 kb on - strand, within LRK53_RS11260 at 2513.866 kb on + strand, within LRK53_RS11260 at 2513.866 kb on + strand, within LRK53_RS11260 at 2513.867 kb on - strand, within LRK53_RS11260 at 2513.973 kb on + strand at 2513.973 kb on + strand at 2513.974 kb on - strand at 2513.974 kb on - strand at 2513.974 kb on - strand at 2513.974 kb on - strand at 2514.041 kb on + strand, within LRK53_RS11265 at 2514.041 kb on + strand, within LRK53_RS11265 at 2514.041 kb on + strand, within LRK53_RS11265 at 2514.042 kb on - strand, within LRK53_RS11265 at 2514.042 kb on - strand, within LRK53_RS11265 at 2514.042 kb on - strand, within LRK53_RS11265 at 2514.221 kb on - strand at 2514.339 kb on + strand at 2514.339 kb on + strand at 2514.340 kb on - strand at 2514.603 kb on + strand, within LRK53_RS11270 at 2514.604 kb on - strand, within LRK53_RS11270 at 2514.604 kb on - strand, within LRK53_RS11270 at 2514.604 kb on - strand, within LRK53_RS11270 at 2514.630 kb on + strand, within LRK53_RS11270 at 2514.630 kb on + strand, within LRK53_RS11270 at 2514.631 kb on - strand, within LRK53_RS11270 at 2514.757 kb on + strand, within LRK53_RS11270 at 2514.757 kb on + strand, within LRK53_RS11270 at 2514.757 kb on + strand, within LRK53_RS11270 at 2514.758 kb on - strand, within LRK53_RS11270 at 2514.758 kb on - strand, within LRK53_RS11270 at 2514.760 kb on - strand, within LRK53_RS11270 at 2514.760 kb on - strand, within LRK53_RS11270 at 2514.760 kb on - strand, within LRK53_RS11270 at 2514.760 kb on - strand, within LRK53_RS11270 at 2514.796 kb on + strand, within LRK53_RS11270 at 2514.796 kb on + strand, within LRK53_RS11270 at 2514.796 kb on + strand, within LRK53_RS11270 at 2514.796 kb on + strand, within LRK53_RS11270 at 2514.797 kb on - strand, within LRK53_RS11270 at 2514.797 kb on - strand, within LRK53_RS11270 at 2514.797 kb on - strand, within LRK53_RS11270 at 2514.797 kb on - strand, within LRK53_RS11270 at 2514.810 kb on + strand, within LRK53_RS11270 at 2514.811 kb on - strand, within LRK53_RS11270 at 2514.811 kb on - strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.933 kb on + strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.934 kb on - strand, within LRK53_RS11270 at 2514.945 kb on + strand, within LRK53_RS11270 at 2514.945 kb on + strand, within LRK53_RS11270 at 2514.945 kb on + strand, within LRK53_RS11270 at 2514.946 kb on - strand, within LRK53_RS11270 at 2514.946 kb on - strand, within LRK53_RS11270 at 2514.946 kb on - strand, within LRK53_RS11270 at 2515.180 kb on + strand at 2515.180 kb on + strand at 2515.180 kb on + strand at 2515.180 kb on + strand at 2515.181 kb on - strand at 2515.181 kb on - strand at 2515.181 kb on - strand at 2515.285 kb on - strand, within LRK53_RS11275 at 2515.285 kb on - strand, within LRK53_RS11275 at 2515.357 kb on + strand at 2515.357 kb on + strand at 2515.357 kb on + strand at 2515.357 kb on + strand at 2515.464 kb on + strand at 2515.465 kb on - strand at 2515.506 kb on + strand at 2515.506 kb on + strand at 2515.506 kb on + strand at 2515.506 kb on + strand at 2515.506 kb on + strand at 2515.506 kb on + strand at 2515.507 kb on - strand at 2515.507 kb on - strand at 2515.507 kb on - strand at 2515.584 kb on + strand at 2515.584 kb on + strand at 2515.584 kb on + strand at 2515.584 kb on + strand at 2515.584 kb on + strand at 2515.584 kb on + strand at 2515.585 kb on - strand at 2515.585 kb on - strand at 2515.587 kb on + strand at 2515.587 kb on + strand at 2515.587 kb on + strand at 2515.587 kb on + strand at 2515.587 kb on + strand at 2515.588 kb on - strand at 2515.588 kb on - strand at 2515.588 kb on - strand at 2515.614 kb on + strand at 2515.614 kb on + strand at 2515.615 kb on - strand at 2515.615 kb on - strand at 2515.681 kb on - strand, within LRK53_RS11280 at 2515.710 kb on - strand, within LRK53_RS11280 at 2515.715 kb on + strand, within LRK53_RS11280 at 2515.954 kb on + strand at 2515.955 kb on - strand at 2515.962 kb on + strand at 2515.962 kb on + strand at 2515.962 kb on + strand at 2515.962 kb on + strand at 2515.962 kb on + strand at 2515.962 kb on + strand at 2515.962 kb on + strand at 2515.962 kb on + strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.963 kb on - strand at 2515.977 kb on + strand at 2515.977 kb on + strand at 2515.978 kb on - strand at 2515.978 kb on - strand at 2515.978 kb on - strand at 2515.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,513,499 + LRK53_RS11260 0.17 -1.5 2,513,512 + LRK53_RS11260 0.19 -0.3 2,513,512 + LRK53_RS11260 0.19 -0.4 2,513,513 - LRK53_RS11260 0.19 +0.6 2,513,513 - LRK53_RS11260 0.19 -0.0 2,513,513 - LRK53_RS11260 0.19 +0.6 2,513,513 - LRK53_RS11260 0.19 -0.2 2,513,526 + LRK53_RS11260 0.21 -0.7 2,513,527 - LRK53_RS11260 0.21 -0.7 2,513,527 - LRK53_RS11260 0.21 -1.0 2,513,527 - LRK53_RS11260 0.21 -0.3 2,513,820 + LRK53_RS11260 0.68 -1.7 2,513,821 - LRK53_RS11260 0.68 +0.8 2,513,821 - LRK53_RS11260 0.68 -1.7 2,513,821 - LRK53_RS11260 0.68 +1.8 2,513,821 - LRK53_RS11260 0.68 -0.6 2,513,821 - LRK53_RS11260 0.68 -1.0 2,513,821 - LRK53_RS11260 0.68 -0.7 2,513,866 + LRK53_RS11260 0.75 -0.8 2,513,866 + LRK53_RS11260 0.75 +1.1 2,513,867 - LRK53_RS11260 0.75 +0.1 2,513,973 + +0.1 2,513,973 + -2.2 2,513,974 - -0.7 2,513,974 - -0.3 2,513,974 - -2.7 2,513,974 - -0.5 2,514,041 + LRK53_RS11265 0.20 -0.4 2,514,041 + LRK53_RS11265 0.20 -0.8 2,514,041 + LRK53_RS11265 0.20 +1.7 2,514,042 - LRK53_RS11265 0.20 -0.5 2,514,042 - LRK53_RS11265 0.20 +1.3 2,514,042 - LRK53_RS11265 0.20 +0.4 2,514,221 - -0.4 2,514,339 + -0.3 2,514,339 + -2.5 2,514,340 - -0.6 2,514,603 + LRK53_RS11270 0.37 -0.0 2,514,604 - LRK53_RS11270 0.37 -0.0 2,514,604 - LRK53_RS11270 0.37 -1.5 2,514,604 - LRK53_RS11270 0.37 -0.6 2,514,630 + LRK53_RS11270 0.40 +0.2 2,514,630 + LRK53_RS11270 0.40 -1.4 2,514,631 - LRK53_RS11270 0.40 -2.0 2,514,757 + LRK53_RS11270 0.53 +1.1 2,514,757 + LRK53_RS11270 0.53 +0.9 2,514,757 + LRK53_RS11270 0.53 +0.2 2,514,758 - LRK53_RS11270 0.53 -0.0 2,514,758 - LRK53_RS11270 0.53 -2.0 2,514,760 - LRK53_RS11270 0.54 -2.3 2,514,760 - LRK53_RS11270 0.54 -1.2 2,514,760 - LRK53_RS11270 0.54 -0.3 2,514,760 - LRK53_RS11270 0.54 +1.7 2,514,796 + LRK53_RS11270 0.57 -0.7 2,514,796 + LRK53_RS11270 0.57 -0.5 2,514,796 + LRK53_RS11270 0.57 -1.4 2,514,796 + LRK53_RS11270 0.57 -0.9 2,514,797 - LRK53_RS11270 0.58 -0.8 2,514,797 - LRK53_RS11270 0.58 -1.5 2,514,797 - LRK53_RS11270 0.58 +1.6 2,514,797 - LRK53_RS11270 0.58 -0.8 2,514,810 + LRK53_RS11270 0.59 -0.7 2,514,811 - LRK53_RS11270 0.59 -1.1 2,514,811 - LRK53_RS11270 0.59 -1.4 2,514,933 + LRK53_RS11270 0.72 -0.7 2,514,933 + LRK53_RS11270 0.72 +0.4 2,514,933 + LRK53_RS11270 0.72 -1.5 2,514,933 + LRK53_RS11270 0.72 -0.5 2,514,933 + LRK53_RS11270 0.72 +0.5 2,514,933 + LRK53_RS11270 0.72 +2.1 2,514,933 + LRK53_RS11270 0.72 -0.6 2,514,933 + LRK53_RS11270 0.72 +0.1 2,514,933 + LRK53_RS11270 0.72 -0.5 2,514,933 + LRK53_RS11270 0.72 +0.1 2,514,933 + LRK53_RS11270 0.72 -0.9 2,514,933 + LRK53_RS11270 0.72 -1.9 2,514,933 + LRK53_RS11270 0.72 +0.2 2,514,933 + LRK53_RS11270 0.72 -1.4 2,514,933 + LRK53_RS11270 0.72 -1.0 2,514,933 + LRK53_RS11270 0.72 -0.1 2,514,933 + LRK53_RS11270 0.72 -0.8 2,514,933 + LRK53_RS11270 0.72 -0.7 2,514,934 - LRK53_RS11270 0.72 -0.1 2,514,934 - LRK53_RS11270 0.72 -2.0 2,514,934 - LRK53_RS11270 0.72 -0.7 2,514,934 - LRK53_RS11270 0.72 -0.1 2,514,934 - LRK53_RS11270 0.72 -1.1 2,514,934 - LRK53_RS11270 0.72 -1.6 2,514,934 - LRK53_RS11270 0.72 -1.2 2,514,934 - LRK53_RS11270 0.72 -1.2 2,514,934 - LRK53_RS11270 0.72 -1.2 2,514,934 - LRK53_RS11270 0.72 -0.5 2,514,945 + LRK53_RS11270 0.73 -2.0 2,514,945 + LRK53_RS11270 0.73 -1.1 2,514,945 + LRK53_RS11270 0.73 -2.3 2,514,946 - LRK53_RS11270 0.73 -0.0 2,514,946 - LRK53_RS11270 0.73 -1.0 2,514,946 - LRK53_RS11270 0.73 -1.2 2,515,180 + +0.2 2,515,180 + -1.3 2,515,180 + -0.8 2,515,180 + -0.8 2,515,181 - -1.5 2,515,181 - -0.3 2,515,181 - -0.6 2,515,285 - LRK53_RS11275 0.51 -2.1 2,515,285 - LRK53_RS11275 0.51 -1.4 2,515,357 + -0.0 2,515,357 + -0.9 2,515,357 + -0.5 2,515,357 + -1.0 2,515,464 + -1.4 2,515,465 - -1.0 2,515,506 + -0.8 2,515,506 + -0.6 2,515,506 + -1.0 2,515,506 + -0.7 2,515,506 + -1.4 2,515,506 + -0.9 2,515,507 - -0.9 2,515,507 - -0.7 2,515,507 - -1.3 2,515,584 + -0.2 2,515,584 + -0.8 2,515,584 + -1.1 2,515,584 + -0.8 2,515,584 + -1.3 2,515,584 + +0.9 2,515,585 - -1.2 2,515,585 - +1.9 2,515,587 + -1.0 2,515,587 + -1.2 2,515,587 + -2.2 2,515,587 + -0.6 2,515,587 + +0.2 2,515,588 - -0.1 2,515,588 - -0.1 2,515,588 - +0.6 2,515,614 + +0.1 2,515,614 + -0.5 2,515,615 - -0.2 2,515,615 - -1.7 2,515,681 - LRK53_RS11280 0.20 -1.0 2,515,710 - LRK53_RS11280 0.28 -0.9 2,515,715 + LRK53_RS11280 0.29 -0.5 2,515,954 + -1.6 2,515,955 - -0.1 2,515,962 + +0.1 2,515,962 + -2.4 2,515,962 + +0.3 2,515,962 + -0.5 2,515,962 + +1.5 2,515,962 + -2.0 2,515,962 + -0.1 2,515,962 + +0.2 2,515,963 - +0.8 2,515,963 - -0.2 2,515,963 - -0.7 2,515,963 - -0.3 2,515,963 - +0.5 2,515,963 - -0.5 2,515,963 - -1.6 2,515,963 - +2.3 2,515,963 - -0.9 2,515,977 + -1.3 2,515,977 + -2.8 2,515,978 - -1.5 2,515,978 - -1.6 2,515,978 - -1.0 2,515,978 - -0.9
Or see this region's nucleotide sequence