Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11075 and LRK53_RS11080 overlap by 4 nucleotides LRK53_RS11080 and LRK53_RS11085 overlap by 4 nucleotides
LRK53_RS11075: LRK53_RS11075 - thymidine phosphorylase family protein, at 2,473,926 to 2,475,440
_RS11075
LRK53_RS11080: LRK53_RS11080 - ribose-phosphate diphosphokinase, at 2,475,437 to 2,476,348
_RS11080
LRK53_RS11085: LRK53_RS11085 - hypothetical protein, at 2,476,345 to 2,477,307
_RS11085
Position (kb)
2475
2476
2477 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2474.518 kb on - strand, within LRK53_RS11075 at 2475.184 kb on - strand, within LRK53_RS11075 at 2475.325 kb on + strand at 2475.381 kb on + strand at 2475.393 kb on + strand at 2475.393 kb on + strand at 2475.393 kb on + strand at 2475.394 kb on - strand at 2475.394 kb on - strand at 2475.394 kb on - strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.436 kb on + strand at 2475.437 kb on - strand at 2475.437 kb on - strand at 2475.448 kb on - strand at 2475.702 kb on - strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.710 kb on + strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.711 kb on - strand, within LRK53_RS11080 at 2475.846 kb on + strand, within LRK53_RS11080 at 2475.846 kb on + strand, within LRK53_RS11080 at 2475.846 kb on + strand, within LRK53_RS11080 at 2475.847 kb on - strand, within LRK53_RS11080 at 2475.847 kb on - strand, within LRK53_RS11080 at 2475.847 kb on - strand, within LRK53_RS11080 at 2475.848 kb on + strand, within LRK53_RS11080 at 2475.849 kb on - strand, within LRK53_RS11080 at 2475.849 kb on - strand, within LRK53_RS11080 at 2475.992 kb on + strand, within LRK53_RS11080 at 2475.992 kb on + strand, within LRK53_RS11080 at 2475.992 kb on + strand, within LRK53_RS11080 at 2475.993 kb on - strand, within LRK53_RS11080 at 2475.993 kb on - strand, within LRK53_RS11080 at 2475.993 kb on - strand, within LRK53_RS11080 at 2476.026 kb on - strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.032 kb on + strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.033 kb on - strand, within LRK53_RS11080 at 2476.112 kb on - strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.137 kb on + strand, within LRK53_RS11080 at 2476.202 kb on + strand, within LRK53_RS11080 at 2476.202 kb on + strand, within LRK53_RS11080 at 2476.203 kb on - strand, within LRK53_RS11080 at 2476.203 kb on - strand, within LRK53_RS11080 at 2476.212 kb on + strand, within LRK53_RS11080 at 2476.270 kb on + strand at 2476.270 kb on + strand at 2476.270 kb on + strand at 2476.270 kb on + strand at 2476.271 kb on - strand at 2476.428 kb on + strand at 2476.429 kb on - strand at 2476.468 kb on + strand, within LRK53_RS11085 at 2476.468 kb on + strand, within LRK53_RS11085 at 2476.469 kb on - strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.626 kb on + strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.627 kb on - strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.633 kb on + strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.634 kb on - strand, within LRK53_RS11085 at 2476.736 kb on - strand, within LRK53_RS11085 at 2476.736 kb on - strand, within LRK53_RS11085 at 2476.744 kb on + strand, within LRK53_RS11085 at 2476.744 kb on + strand, within LRK53_RS11085 at 2476.744 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.801 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.915 kb on + strand, within LRK53_RS11085 at 2476.916 kb on - strand, within LRK53_RS11085 at 2476.916 kb on - strand, within LRK53_RS11085 at 2476.916 kb on - strand, within LRK53_RS11085 at 2476.921 kb on + strand, within LRK53_RS11085 at 2476.921 kb on + strand, within LRK53_RS11085 at 2476.921 kb on + strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2476.922 kb on - strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.031 kb on + strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085 at 2477.032 kb on - strand, within LRK53_RS11085
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,474,518 - LRK53_RS11075 0.39 -1.2 2,475,184 - LRK53_RS11075 0.83 +0.4 2,475,325 + -0.8 2,475,381 + +0.4 2,475,393 + -0.1 2,475,393 + -0.3 2,475,393 + +0.4 2,475,394 - -1.6 2,475,394 - +0.0 2,475,394 - +0.8 2,475,436 + -1.2 2,475,436 + -0.0 2,475,436 + -0.5 2,475,436 + -1.1 2,475,436 + -0.3 2,475,437 - +1.5 2,475,437 - -0.9 2,475,448 - -0.6 2,475,702 - LRK53_RS11080 0.29 +1.5 2,475,710 + LRK53_RS11080 0.30 -0.4 2,475,710 + LRK53_RS11080 0.30 +0.6 2,475,710 + LRK53_RS11080 0.30 -1.7 2,475,710 + LRK53_RS11080 0.30 +0.5 2,475,710 + LRK53_RS11080 0.30 +0.9 2,475,710 + LRK53_RS11080 0.30 -0.4 2,475,710 + LRK53_RS11080 0.30 -1.5 2,475,710 + LRK53_RS11080 0.30 +0.2 2,475,710 + LRK53_RS11080 0.30 -1.8 2,475,710 + LRK53_RS11080 0.30 +0.8 2,475,710 + LRK53_RS11080 0.30 +0.1 2,475,710 + LRK53_RS11080 0.30 -0.6 2,475,711 - LRK53_RS11080 0.30 -0.7 2,475,711 - LRK53_RS11080 0.30 -0.1 2,475,711 - LRK53_RS11080 0.30 +0.4 2,475,711 - LRK53_RS11080 0.30 -0.1 2,475,711 - LRK53_RS11080 0.30 -0.3 2,475,711 - LRK53_RS11080 0.30 -1.3 2,475,711 - LRK53_RS11080 0.30 +0.2 2,475,711 - LRK53_RS11080 0.30 -2.5 2,475,711 - LRK53_RS11080 0.30 -0.5 2,475,711 - LRK53_RS11080 0.30 -1.6 2,475,711 - LRK53_RS11080 0.30 +0.2 2,475,711 - LRK53_RS11080 0.30 +0.0 2,475,711 - LRK53_RS11080 0.30 +0.8 2,475,711 - LRK53_RS11080 0.30 -0.1 2,475,711 - LRK53_RS11080 0.30 -1.1 2,475,846 + LRK53_RS11080 0.45 +0.1 2,475,846 + LRK53_RS11080 0.45 -2.5 2,475,846 + LRK53_RS11080 0.45 -1.2 2,475,847 - LRK53_RS11080 0.45 -1.1 2,475,847 - LRK53_RS11080 0.45 +0.0 2,475,847 - LRK53_RS11080 0.45 +0.3 2,475,848 + LRK53_RS11080 0.45 -0.8 2,475,849 - LRK53_RS11080 0.45 -0.8 2,475,849 - LRK53_RS11080 0.45 -1.6 2,475,992 + LRK53_RS11080 0.61 +0.8 2,475,992 + LRK53_RS11080 0.61 +0.7 2,475,992 + LRK53_RS11080 0.61 -0.3 2,475,993 - LRK53_RS11080 0.61 -0.2 2,475,993 - LRK53_RS11080 0.61 +0.7 2,475,993 - LRK53_RS11080 0.61 +0.4 2,476,026 - LRK53_RS11080 0.65 +0.5 2,476,032 + LRK53_RS11080 0.65 -1.5 2,476,032 + LRK53_RS11080 0.65 -1.8 2,476,032 + LRK53_RS11080 0.65 +2.2 2,476,032 + LRK53_RS11080 0.65 -1.6 2,476,032 + LRK53_RS11080 0.65 -1.2 2,476,032 + LRK53_RS11080 0.65 -0.9 2,476,032 + LRK53_RS11080 0.65 -0.6 2,476,032 + LRK53_RS11080 0.65 +0.9 2,476,033 - LRK53_RS11080 0.65 -0.3 2,476,033 - LRK53_RS11080 0.65 +0.5 2,476,033 - LRK53_RS11080 0.65 -0.5 2,476,033 - LRK53_RS11080 0.65 +2.6 2,476,033 - LRK53_RS11080 0.65 -0.6 2,476,033 - LRK53_RS11080 0.65 -2.2 2,476,033 - LRK53_RS11080 0.65 -0.7 2,476,033 - LRK53_RS11080 0.65 -2.0 2,476,112 - LRK53_RS11080 0.74 -0.3 2,476,137 + LRK53_RS11080 0.77 -1.3 2,476,137 + LRK53_RS11080 0.77 -1.6 2,476,137 + LRK53_RS11080 0.77 -0.4 2,476,137 + LRK53_RS11080 0.77 +0.7 2,476,202 + LRK53_RS11080 0.84 +0.8 2,476,202 + LRK53_RS11080 0.84 -0.6 2,476,203 - LRK53_RS11080 0.84 -0.6 2,476,203 - LRK53_RS11080 0.84 +0.6 2,476,212 + LRK53_RS11080 0.85 +0.1 2,476,270 + -1.5 2,476,270 + +0.8 2,476,270 + +0.2 2,476,270 + -1.2 2,476,271 - +0.1 2,476,428 + -0.8 2,476,429 - +0.1 2,476,468 + LRK53_RS11085 0.13 -1.5 2,476,468 + LRK53_RS11085 0.13 +0.4 2,476,469 - LRK53_RS11085 0.13 -1.0 2,476,626 + LRK53_RS11085 0.29 +0.9 2,476,626 + LRK53_RS11085 0.29 +0.2 2,476,626 + LRK53_RS11085 0.29 -1.2 2,476,626 + LRK53_RS11085 0.29 +1.3 2,476,626 + LRK53_RS11085 0.29 +1.0 2,476,626 + LRK53_RS11085 0.29 -0.3 2,476,626 + LRK53_RS11085 0.29 -0.6 2,476,626 + LRK53_RS11085 0.29 +0.1 2,476,626 + LRK53_RS11085 0.29 -1.1 2,476,626 + LRK53_RS11085 0.29 -0.8 2,476,626 + LRK53_RS11085 0.29 -0.1 2,476,626 + LRK53_RS11085 0.29 -0.3 2,476,626 + LRK53_RS11085 0.29 -1.1 2,476,626 + LRK53_RS11085 0.29 -0.7 2,476,626 + LRK53_RS11085 0.29 -0.8 2,476,626 + LRK53_RS11085 0.29 -1.6 2,476,626 + LRK53_RS11085 0.29 -0.6 2,476,626 + LRK53_RS11085 0.29 +0.2 2,476,626 + LRK53_RS11085 0.29 +1.2 2,476,626 + LRK53_RS11085 0.29 +0.7 2,476,627 - LRK53_RS11085 0.29 +0.0 2,476,627 - LRK53_RS11085 0.29 -1.1 2,476,627 - LRK53_RS11085 0.29 -1.6 2,476,627 - LRK53_RS11085 0.29 -0.7 2,476,627 - LRK53_RS11085 0.29 -0.7 2,476,627 - LRK53_RS11085 0.29 +0.4 2,476,627 - LRK53_RS11085 0.29 +0.7 2,476,627 - LRK53_RS11085 0.29 -0.1 2,476,627 - LRK53_RS11085 0.29 -0.9 2,476,627 - LRK53_RS11085 0.29 -0.3 2,476,627 - LRK53_RS11085 0.29 -0.5 2,476,627 - LRK53_RS11085 0.29 -0.1 2,476,627 - LRK53_RS11085 0.29 +0.2 2,476,627 - LRK53_RS11085 0.29 -0.4 2,476,627 - LRK53_RS11085 0.29 -0.9 2,476,627 - LRK53_RS11085 0.29 -0.1 2,476,627 - LRK53_RS11085 0.29 -1.2 2,476,633 + LRK53_RS11085 0.30 +1.2 2,476,633 + LRK53_RS11085 0.30 +1.6 2,476,633 + LRK53_RS11085 0.30 -0.2 2,476,633 + LRK53_RS11085 0.30 -1.0 2,476,633 + LRK53_RS11085 0.30 -0.3 2,476,633 + LRK53_RS11085 0.30 -0.7 2,476,634 - LRK53_RS11085 0.30 -0.9 2,476,634 - LRK53_RS11085 0.30 -1.3 2,476,634 - LRK53_RS11085 0.30 -2.1 2,476,634 - LRK53_RS11085 0.30 -0.1 2,476,634 - LRK53_RS11085 0.30 -0.3 2,476,736 - LRK53_RS11085 0.41 +1.8 2,476,736 - LRK53_RS11085 0.41 -0.3 2,476,744 + LRK53_RS11085 0.41 -0.4 2,476,744 + LRK53_RS11085 0.41 -1.2 2,476,744 + LRK53_RS11085 0.41 -1.5 2,476,801 + LRK53_RS11085 0.47 -0.7 2,476,801 + LRK53_RS11085 0.47 +0.2 2,476,801 + LRK53_RS11085 0.47 -1.9 2,476,801 + LRK53_RS11085 0.47 +1.1 2,476,915 + LRK53_RS11085 0.59 -0.1 2,476,915 + LRK53_RS11085 0.59 +0.9 2,476,915 + LRK53_RS11085 0.59 -0.2 2,476,915 + LRK53_RS11085 0.59 -0.2 2,476,915 + LRK53_RS11085 0.59 +1.2 2,476,916 - LRK53_RS11085 0.59 -0.2 2,476,916 - LRK53_RS11085 0.59 +0.6 2,476,916 - LRK53_RS11085 0.59 -2.3 2,476,921 + LRK53_RS11085 0.60 -2.2 2,476,921 + LRK53_RS11085 0.60 -1.4 2,476,921 + LRK53_RS11085 0.60 -1.3 2,476,922 - LRK53_RS11085 0.60 -1.5 2,476,922 - LRK53_RS11085 0.60 +0.2 2,476,922 - LRK53_RS11085 0.60 +1.2 2,476,922 - LRK53_RS11085 0.60 +0.8 2,477,031 + LRK53_RS11085 0.71 -0.6 2,477,031 + LRK53_RS11085 0.71 -1.3 2,477,031 + LRK53_RS11085 0.71 +0.6 2,477,031 + LRK53_RS11085 0.71 -0.0 2,477,031 + LRK53_RS11085 0.71 +0.0 2,477,031 + LRK53_RS11085 0.71 -0.8 2,477,031 + LRK53_RS11085 0.71 +0.1 2,477,031 + LRK53_RS11085 0.71 +0.3 2,477,032 - LRK53_RS11085 0.71 +0.8 2,477,032 - LRK53_RS11085 0.71 -1.1 2,477,032 - LRK53_RS11085 0.71 -0.8 2,477,032 - LRK53_RS11085 0.71 +0.1 2,477,032 - LRK53_RS11085 0.71 -0.2 2,477,032 - LRK53_RS11085 0.71 -0.7 2,477,032 - LRK53_RS11085 0.71 -0.3 2,477,032 - LRK53_RS11085 0.71 -0.6
Or see this region's nucleotide sequence