Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11080

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11075 and LRK53_RS11080 overlap by 4 nucleotidesLRK53_RS11080 and LRK53_RS11085 overlap by 4 nucleotides LRK53_RS11075: LRK53_RS11075 - thymidine phosphorylase family protein, at 2,473,926 to 2,475,440 _RS11075 LRK53_RS11080: LRK53_RS11080 - ribose-phosphate diphosphokinase, at 2,475,437 to 2,476,348 _RS11080 LRK53_RS11085: LRK53_RS11085 - hypothetical protein, at 2,476,345 to 2,477,307 _RS11085 Position (kb) 2475 2476 2477Strain fitness (log2 ratio) -2 -1 0 1 2at 2474.518 kb on - strand, within LRK53_RS11075at 2475.184 kb on - strand, within LRK53_RS11075at 2475.325 kb on + strandat 2475.381 kb on + strandat 2475.393 kb on + strandat 2475.393 kb on + strandat 2475.393 kb on + strandat 2475.394 kb on - strandat 2475.394 kb on - strandat 2475.394 kb on - strandat 2475.436 kb on + strandat 2475.436 kb on + strandat 2475.436 kb on + strandat 2475.436 kb on + strandat 2475.436 kb on + strandat 2475.437 kb on - strandat 2475.437 kb on - strandat 2475.448 kb on - strandat 2475.702 kb on - strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.710 kb on + strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.711 kb on - strand, within LRK53_RS11080at 2475.846 kb on + strand, within LRK53_RS11080at 2475.846 kb on + strand, within LRK53_RS11080at 2475.846 kb on + strand, within LRK53_RS11080at 2475.847 kb on - strand, within LRK53_RS11080at 2475.847 kb on - strand, within LRK53_RS11080at 2475.847 kb on - strand, within LRK53_RS11080at 2475.848 kb on + strand, within LRK53_RS11080at 2475.849 kb on - strand, within LRK53_RS11080at 2475.849 kb on - strand, within LRK53_RS11080at 2475.992 kb on + strand, within LRK53_RS11080at 2475.992 kb on + strand, within LRK53_RS11080at 2475.992 kb on + strand, within LRK53_RS11080at 2475.993 kb on - strand, within LRK53_RS11080at 2475.993 kb on - strand, within LRK53_RS11080at 2475.993 kb on - strand, within LRK53_RS11080at 2476.026 kb on - strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.032 kb on + strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.033 kb on - strand, within LRK53_RS11080at 2476.112 kb on - strand, within LRK53_RS11080at 2476.137 kb on + strand, within LRK53_RS11080at 2476.137 kb on + strand, within LRK53_RS11080at 2476.137 kb on + strand, within LRK53_RS11080at 2476.137 kb on + strand, within LRK53_RS11080at 2476.202 kb on + strand, within LRK53_RS11080at 2476.202 kb on + strand, within LRK53_RS11080at 2476.203 kb on - strand, within LRK53_RS11080at 2476.203 kb on - strand, within LRK53_RS11080at 2476.212 kb on + strand, within LRK53_RS11080at 2476.270 kb on + strandat 2476.270 kb on + strandat 2476.270 kb on + strandat 2476.270 kb on + strandat 2476.271 kb on - strandat 2476.428 kb on + strandat 2476.429 kb on - strandat 2476.468 kb on + strand, within LRK53_RS11085at 2476.468 kb on + strand, within LRK53_RS11085at 2476.469 kb on - strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.626 kb on + strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.627 kb on - strand, within LRK53_RS11085at 2476.633 kb on + strand, within LRK53_RS11085at 2476.633 kb on + strand, within LRK53_RS11085at 2476.633 kb on + strand, within LRK53_RS11085at 2476.633 kb on + strand, within LRK53_RS11085at 2476.633 kb on + strand, within LRK53_RS11085at 2476.633 kb on + strand, within LRK53_RS11085at 2476.634 kb on - strand, within LRK53_RS11085at 2476.634 kb on - strand, within LRK53_RS11085at 2476.634 kb on - strand, within LRK53_RS11085at 2476.634 kb on - strand, within LRK53_RS11085at 2476.634 kb on - strand, within LRK53_RS11085at 2476.736 kb on - strand, within LRK53_RS11085at 2476.736 kb on - strand, within LRK53_RS11085at 2476.744 kb on + strand, within LRK53_RS11085at 2476.744 kb on + strand, within LRK53_RS11085at 2476.744 kb on + strand, within LRK53_RS11085at 2476.801 kb on + strand, within LRK53_RS11085at 2476.801 kb on + strand, within LRK53_RS11085at 2476.801 kb on + strand, within LRK53_RS11085at 2476.801 kb on + strand, within LRK53_RS11085at 2476.915 kb on + strand, within LRK53_RS11085at 2476.915 kb on + strand, within LRK53_RS11085at 2476.915 kb on + strand, within LRK53_RS11085at 2476.915 kb on + strand, within LRK53_RS11085at 2476.915 kb on + strand, within LRK53_RS11085at 2476.916 kb on - strand, within LRK53_RS11085at 2476.916 kb on - strand, within LRK53_RS11085at 2476.916 kb on - strand, within LRK53_RS11085at 2476.921 kb on + strand, within LRK53_RS11085at 2476.921 kb on + strand, within LRK53_RS11085at 2476.921 kb on + strand, within LRK53_RS11085at 2476.922 kb on - strand, within LRK53_RS11085at 2476.922 kb on - strand, within LRK53_RS11085at 2476.922 kb on - strand, within LRK53_RS11085at 2476.922 kb on - strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.031 kb on + strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085at 2477.032 kb on - strand, within LRK53_RS11085

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,474,518 - LRK53_RS11075 0.39 -1.2
2,475,184 - LRK53_RS11075 0.83 +0.4
2,475,325 + -0.8
2,475,381 + +0.4
2,475,393 + -0.1
2,475,393 + -0.3
2,475,393 + +0.4
2,475,394 - -1.6
2,475,394 - +0.0
2,475,394 - +0.8
2,475,436 + -1.2
2,475,436 + -0.0
2,475,436 + -0.5
2,475,436 + -1.1
2,475,436 + -0.3
2,475,437 - +1.5
2,475,437 - -0.9
2,475,448 - -0.6
2,475,702 - LRK53_RS11080 0.29 +1.5
2,475,710 + LRK53_RS11080 0.30 -0.4
2,475,710 + LRK53_RS11080 0.30 +0.6
2,475,710 + LRK53_RS11080 0.30 -1.7
2,475,710 + LRK53_RS11080 0.30 +0.5
2,475,710 + LRK53_RS11080 0.30 +0.9
2,475,710 + LRK53_RS11080 0.30 -0.4
2,475,710 + LRK53_RS11080 0.30 -1.5
2,475,710 + LRK53_RS11080 0.30 +0.2
2,475,710 + LRK53_RS11080 0.30 -1.8
2,475,710 + LRK53_RS11080 0.30 +0.8
2,475,710 + LRK53_RS11080 0.30 +0.1
2,475,710 + LRK53_RS11080 0.30 -0.6
2,475,711 - LRK53_RS11080 0.30 -0.7
2,475,711 - LRK53_RS11080 0.30 -0.1
2,475,711 - LRK53_RS11080 0.30 +0.4
2,475,711 - LRK53_RS11080 0.30 -0.1
2,475,711 - LRK53_RS11080 0.30 -0.3
2,475,711 - LRK53_RS11080 0.30 -1.3
2,475,711 - LRK53_RS11080 0.30 +0.2
2,475,711 - LRK53_RS11080 0.30 -2.5
2,475,711 - LRK53_RS11080 0.30 -0.5
2,475,711 - LRK53_RS11080 0.30 -1.6
2,475,711 - LRK53_RS11080 0.30 +0.2
2,475,711 - LRK53_RS11080 0.30 +0.0
2,475,711 - LRK53_RS11080 0.30 +0.8
2,475,711 - LRK53_RS11080 0.30 -0.1
2,475,711 - LRK53_RS11080 0.30 -1.1
2,475,846 + LRK53_RS11080 0.45 +0.1
2,475,846 + LRK53_RS11080 0.45 -2.5
2,475,846 + LRK53_RS11080 0.45 -1.2
2,475,847 - LRK53_RS11080 0.45 -1.1
2,475,847 - LRK53_RS11080 0.45 +0.0
2,475,847 - LRK53_RS11080 0.45 +0.3
2,475,848 + LRK53_RS11080 0.45 -0.8
2,475,849 - LRK53_RS11080 0.45 -0.8
2,475,849 - LRK53_RS11080 0.45 -1.6
2,475,992 + LRK53_RS11080 0.61 +0.8
2,475,992 + LRK53_RS11080 0.61 +0.7
2,475,992 + LRK53_RS11080 0.61 -0.3
2,475,993 - LRK53_RS11080 0.61 -0.2
2,475,993 - LRK53_RS11080 0.61 +0.7
2,475,993 - LRK53_RS11080 0.61 +0.4
2,476,026 - LRK53_RS11080 0.65 +0.5
2,476,032 + LRK53_RS11080 0.65 -1.5
2,476,032 + LRK53_RS11080 0.65 -1.8
2,476,032 + LRK53_RS11080 0.65 +2.2
2,476,032 + LRK53_RS11080 0.65 -1.6
2,476,032 + LRK53_RS11080 0.65 -1.2
2,476,032 + LRK53_RS11080 0.65 -0.9
2,476,032 + LRK53_RS11080 0.65 -0.6
2,476,032 + LRK53_RS11080 0.65 +0.9
2,476,033 - LRK53_RS11080 0.65 -0.3
2,476,033 - LRK53_RS11080 0.65 +0.5
2,476,033 - LRK53_RS11080 0.65 -0.5
2,476,033 - LRK53_RS11080 0.65 +2.6
2,476,033 - LRK53_RS11080 0.65 -0.6
2,476,033 - LRK53_RS11080 0.65 -2.2
2,476,033 - LRK53_RS11080 0.65 -0.7
2,476,033 - LRK53_RS11080 0.65 -2.0
2,476,112 - LRK53_RS11080 0.74 -0.3
2,476,137 + LRK53_RS11080 0.77 -1.3
2,476,137 + LRK53_RS11080 0.77 -1.6
2,476,137 + LRK53_RS11080 0.77 -0.4
2,476,137 + LRK53_RS11080 0.77 +0.7
2,476,202 + LRK53_RS11080 0.84 +0.8
2,476,202 + LRK53_RS11080 0.84 -0.6
2,476,203 - LRK53_RS11080 0.84 -0.6
2,476,203 - LRK53_RS11080 0.84 +0.6
2,476,212 + LRK53_RS11080 0.85 +0.1
2,476,270 + -1.5
2,476,270 + +0.8
2,476,270 + +0.2
2,476,270 + -1.2
2,476,271 - +0.1
2,476,428 + -0.8
2,476,429 - +0.1
2,476,468 + LRK53_RS11085 0.13 -1.5
2,476,468 + LRK53_RS11085 0.13 +0.4
2,476,469 - LRK53_RS11085 0.13 -1.0
2,476,626 + LRK53_RS11085 0.29 +0.9
2,476,626 + LRK53_RS11085 0.29 +0.2
2,476,626 + LRK53_RS11085 0.29 -1.2
2,476,626 + LRK53_RS11085 0.29 +1.3
2,476,626 + LRK53_RS11085 0.29 +1.0
2,476,626 + LRK53_RS11085 0.29 -0.3
2,476,626 + LRK53_RS11085 0.29 -0.6
2,476,626 + LRK53_RS11085 0.29 +0.1
2,476,626 + LRK53_RS11085 0.29 -1.1
2,476,626 + LRK53_RS11085 0.29 -0.8
2,476,626 + LRK53_RS11085 0.29 -0.1
2,476,626 + LRK53_RS11085 0.29 -0.3
2,476,626 + LRK53_RS11085 0.29 -1.1
2,476,626 + LRK53_RS11085 0.29 -0.7
2,476,626 + LRK53_RS11085 0.29 -0.8
2,476,626 + LRK53_RS11085 0.29 -1.6
2,476,626 + LRK53_RS11085 0.29 -0.6
2,476,626 + LRK53_RS11085 0.29 +0.2
2,476,626 + LRK53_RS11085 0.29 +1.2
2,476,626 + LRK53_RS11085 0.29 +0.7
2,476,627 - LRK53_RS11085 0.29 +0.0
2,476,627 - LRK53_RS11085 0.29 -1.1
2,476,627 - LRK53_RS11085 0.29 -1.6
2,476,627 - LRK53_RS11085 0.29 -0.7
2,476,627 - LRK53_RS11085 0.29 -0.7
2,476,627 - LRK53_RS11085 0.29 +0.4
2,476,627 - LRK53_RS11085 0.29 +0.7
2,476,627 - LRK53_RS11085 0.29 -0.1
2,476,627 - LRK53_RS11085 0.29 -0.9
2,476,627 - LRK53_RS11085 0.29 -0.3
2,476,627 - LRK53_RS11085 0.29 -0.5
2,476,627 - LRK53_RS11085 0.29 -0.1
2,476,627 - LRK53_RS11085 0.29 +0.2
2,476,627 - LRK53_RS11085 0.29 -0.4
2,476,627 - LRK53_RS11085 0.29 -0.9
2,476,627 - LRK53_RS11085 0.29 -0.1
2,476,627 - LRK53_RS11085 0.29 -1.2
2,476,633 + LRK53_RS11085 0.30 +1.2
2,476,633 + LRK53_RS11085 0.30 +1.6
2,476,633 + LRK53_RS11085 0.30 -0.2
2,476,633 + LRK53_RS11085 0.30 -1.0
2,476,633 + LRK53_RS11085 0.30 -0.3
2,476,633 + LRK53_RS11085 0.30 -0.7
2,476,634 - LRK53_RS11085 0.30 -0.9
2,476,634 - LRK53_RS11085 0.30 -1.3
2,476,634 - LRK53_RS11085 0.30 -2.1
2,476,634 - LRK53_RS11085 0.30 -0.1
2,476,634 - LRK53_RS11085 0.30 -0.3
2,476,736 - LRK53_RS11085 0.41 +1.8
2,476,736 - LRK53_RS11085 0.41 -0.3
2,476,744 + LRK53_RS11085 0.41 -0.4
2,476,744 + LRK53_RS11085 0.41 -1.2
2,476,744 + LRK53_RS11085 0.41 -1.5
2,476,801 + LRK53_RS11085 0.47 -0.7
2,476,801 + LRK53_RS11085 0.47 +0.2
2,476,801 + LRK53_RS11085 0.47 -1.9
2,476,801 + LRK53_RS11085 0.47 +1.1
2,476,915 + LRK53_RS11085 0.59 -0.1
2,476,915 + LRK53_RS11085 0.59 +0.9
2,476,915 + LRK53_RS11085 0.59 -0.2
2,476,915 + LRK53_RS11085 0.59 -0.2
2,476,915 + LRK53_RS11085 0.59 +1.2
2,476,916 - LRK53_RS11085 0.59 -0.2
2,476,916 - LRK53_RS11085 0.59 +0.6
2,476,916 - LRK53_RS11085 0.59 -2.3
2,476,921 + LRK53_RS11085 0.60 -2.2
2,476,921 + LRK53_RS11085 0.60 -1.4
2,476,921 + LRK53_RS11085 0.60 -1.3
2,476,922 - LRK53_RS11085 0.60 -1.5
2,476,922 - LRK53_RS11085 0.60 +0.2
2,476,922 - LRK53_RS11085 0.60 +1.2
2,476,922 - LRK53_RS11085 0.60 +0.8
2,477,031 + LRK53_RS11085 0.71 -0.6
2,477,031 + LRK53_RS11085 0.71 -1.3
2,477,031 + LRK53_RS11085 0.71 +0.6
2,477,031 + LRK53_RS11085 0.71 -0.0
2,477,031 + LRK53_RS11085 0.71 +0.0
2,477,031 + LRK53_RS11085 0.71 -0.8
2,477,031 + LRK53_RS11085 0.71 +0.1
2,477,031 + LRK53_RS11085 0.71 +0.3
2,477,032 - LRK53_RS11085 0.71 +0.8
2,477,032 - LRK53_RS11085 0.71 -1.1
2,477,032 - LRK53_RS11085 0.71 -0.8
2,477,032 - LRK53_RS11085 0.71 +0.1
2,477,032 - LRK53_RS11085 0.71 -0.2
2,477,032 - LRK53_RS11085 0.71 -0.7
2,477,032 - LRK53_RS11085 0.71 -0.3
2,477,032 - LRK53_RS11085 0.71 -0.6

Or see this region's nucleotide sequence