Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08220

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08215 and LRK53_RS08220 overlap by 4 nucleotidesLRK53_RS08220 and LRK53_RS08225 overlap by 8 nucleotidesLRK53_RS08225 and LRK53_RS08230 are separated by 69 nucleotides LRK53_RS08215: LRK53_RS08215 - MFS transporter, at 1,850,215 to 1,851,336 _RS08215 LRK53_RS08220: LRK53_RS08220 - HAD family phosphatase, at 1,851,333 to 1,851,962 _RS08220 LRK53_RS08225: LRK53_RS08225 - DeoR/GlpR family DNA-binding transcription regulator, at 1,851,955 to 1,852,752 _RS08225 LRK53_RS08230: LRK53_RS08230 - DUF2147 domain-containing protein, at 1,852,822 to 1,853,286 _RS08230 Position (kb) 1851 1852Strain fitness (log2 ratio) -1 0 1 2at 1850.346 kb on - strand, within LRK53_RS08215at 1850.346 kb on - strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.512 kb on + strand, within LRK53_RS08215at 1850.513 kb on - strand, within LRK53_RS08215at 1850.513 kb on - strand, within LRK53_RS08215at 1850.513 kb on - strand, within LRK53_RS08215at 1850.513 kb on - strand, within LRK53_RS08215at 1850.513 kb on - strand, within LRK53_RS08215at 1850.929 kb on + strand, within LRK53_RS08215at 1850.930 kb on - strand, within LRK53_RS08215at 1851.095 kb on + strand, within LRK53_RS08215at 1851.095 kb on + strand, within LRK53_RS08215at 1851.096 kb on - strand, within LRK53_RS08215at 1851.096 kb on - strand, within LRK53_RS08215at 1851.096 kb on - strand, within LRK53_RS08215at 1851.205 kb on + strand, within LRK53_RS08215at 1851.205 kb on + strand, within LRK53_RS08215at 1851.408 kb on + strand, within LRK53_RS08220at 1851.408 kb on + strand, within LRK53_RS08220at 1851.409 kb on - strand, within LRK53_RS08220at 1851.657 kb on + strand, within LRK53_RS08220at 1851.657 kb on + strand, within LRK53_RS08220at 1851.658 kb on - strand, within LRK53_RS08220at 1851.658 kb on - strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.960 kb on + strandat 1851.961 kb on - strandat 1851.961 kb on - strandat 1852.138 kb on + strand, within LRK53_RS08225at 1852.138 kb on + strand, within LRK53_RS08225at 1852.139 kb on - strand, within LRK53_RS08225at 1852.139 kb on - strand, within LRK53_RS08225at 1852.614 kb on + strand, within LRK53_RS08225at 1852.614 kb on + strand, within LRK53_RS08225at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.928 kb on + strand, within LRK53_RS08230at 1852.928 kb on + strand, within LRK53_RS08230at 1852.928 kb on + strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,850,346 - LRK53_RS08215 0.12 +0.4
1,850,346 - LRK53_RS08215 0.12 -0.5
1,850,512 + LRK53_RS08215 0.26 -0.2
1,850,512 + LRK53_RS08215 0.26 -0.4
1,850,512 + LRK53_RS08215 0.26 -0.8
1,850,512 + LRK53_RS08215 0.26 +0.9
1,850,512 + LRK53_RS08215 0.26 +1.8
1,850,512 + LRK53_RS08215 0.26 -0.0
1,850,512 + LRK53_RS08215 0.26 -1.2
1,850,512 + LRK53_RS08215 0.26 +0.4
1,850,512 + LRK53_RS08215 0.26 -1.6
1,850,513 - LRK53_RS08215 0.27 -0.3
1,850,513 - LRK53_RS08215 0.27 -0.3
1,850,513 - LRK53_RS08215 0.27 +1.5
1,850,513 - LRK53_RS08215 0.27 -0.8
1,850,513 - LRK53_RS08215 0.27 -0.2
1,850,929 + LRK53_RS08215 0.64 -0.8
1,850,930 - LRK53_RS08215 0.64 -1.4
1,851,095 + LRK53_RS08215 0.78 -0.3
1,851,095 + LRK53_RS08215 0.78 +0.2
1,851,096 - LRK53_RS08215 0.79 +0.3
1,851,096 - LRK53_RS08215 0.79 -1.1
1,851,096 - LRK53_RS08215 0.79 -1.5
1,851,205 + LRK53_RS08215 0.88 -0.6
1,851,205 + LRK53_RS08215 0.88 -0.1
1,851,408 + LRK53_RS08220 0.12 -1.6
1,851,408 + LRK53_RS08220 0.12 -0.7
1,851,409 - LRK53_RS08220 0.12 +0.4
1,851,657 + LRK53_RS08220 0.51 -0.7
1,851,657 + LRK53_RS08220 0.51 -0.3
1,851,658 - LRK53_RS08220 0.52 -0.1
1,851,658 - LRK53_RS08220 0.52 -0.6
1,851,831 + LRK53_RS08220 0.79 +0.0
1,851,831 + LRK53_RS08220 0.79 +0.4
1,851,831 + LRK53_RS08220 0.79 +1.1
1,851,831 + LRK53_RS08220 0.79 -1.3
1,851,831 + LRK53_RS08220 0.79 -0.5
1,851,831 + LRK53_RS08220 0.79 -0.1
1,851,831 + LRK53_RS08220 0.79 -1.1
1,851,831 + LRK53_RS08220 0.79 -0.0
1,851,831 + LRK53_RS08220 0.79 -0.6
1,851,831 + LRK53_RS08220 0.79 -0.5
1,851,831 + LRK53_RS08220 0.79 +1.4
1,851,831 + LRK53_RS08220 0.79 -0.4
1,851,831 + LRK53_RS08220 0.79 +1.2
1,851,831 + LRK53_RS08220 0.79 +0.3
1,851,831 + LRK53_RS08220 0.79 +0.5
1,851,832 - LRK53_RS08220 0.79 +0.1
1,851,832 - LRK53_RS08220 0.79 -0.7
1,851,832 - LRK53_RS08220 0.79 -1.1
1,851,832 - LRK53_RS08220 0.79 -0.1
1,851,832 - LRK53_RS08220 0.79 -0.1
1,851,832 - LRK53_RS08220 0.79 -0.3
1,851,832 - LRK53_RS08220 0.79 -0.9
1,851,832 - LRK53_RS08220 0.79 -0.4
1,851,832 - LRK53_RS08220 0.79 -0.3
1,851,832 - LRK53_RS08220 0.79 -0.2
1,851,832 - LRK53_RS08220 0.79 -0.1
1,851,832 - LRK53_RS08220 0.79 +0.9
1,851,832 - LRK53_RS08220 0.79 -1.2
1,851,832 - LRK53_RS08220 0.79 +0.4
1,851,832 - LRK53_RS08220 0.79 -0.3
1,851,960 + -0.5
1,851,961 - +1.8
1,851,961 - +0.0
1,852,138 + LRK53_RS08225 0.23 -0.4
1,852,138 + LRK53_RS08225 0.23 -1.1
1,852,139 - LRK53_RS08225 0.23 +0.1
1,852,139 - LRK53_RS08225 0.23 -0.2
1,852,614 + LRK53_RS08225 0.83 -0.4
1,852,614 + LRK53_RS08225 0.83 +0.4
1,852,874 + LRK53_RS08230 0.11 -1.0
1,852,874 + LRK53_RS08230 0.11 -0.1
1,852,874 + LRK53_RS08230 0.11 +0.7
1,852,874 + LRK53_RS08230 0.11 -0.8
1,852,874 + LRK53_RS08230 0.11 -0.5
1,852,875 - LRK53_RS08230 0.11 +1.5
1,852,875 - LRK53_RS08230 0.11 +0.5
1,852,875 - LRK53_RS08230 0.11 -0.3
1,852,875 - LRK53_RS08230 0.11 -0.5
1,852,875 - LRK53_RS08230 0.11 +1.8
1,852,875 - LRK53_RS08230 0.11 -1.2
1,852,875 - LRK53_RS08230 0.11 +0.4
1,852,875 - LRK53_RS08230 0.11 -0.3
1,852,928 + LRK53_RS08230 0.23 +2.5
1,852,928 + LRK53_RS08230 0.23 +0.1
1,852,928 + LRK53_RS08230 0.23 -0.3
1,852,929 - LRK53_RS08230 0.23 +0.5
1,852,929 - LRK53_RS08230 0.23 -0.6
1,852,929 - LRK53_RS08230 0.23 -0.2
1,852,929 - LRK53_RS08230 0.23 +0.0

Or see this region's nucleotide sequence