Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08165

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08160 and LRK53_RS08165 are separated by 190 nucleotidesLRK53_RS08165 and LRK53_RS08170 are separated by 259 nucleotides LRK53_RS08160: LRK53_RS08160 - DMT family transporter, at 1,835,988 to 1,836,917 _RS08160 LRK53_RS08165: LRK53_RS08165 - AsmA family protein, at 1,837,108 to 1,839,249 _RS08165 LRK53_RS08170: LRK53_RS08170 - peptidylprolyl isomerase, at 1,839,509 to 1,840,444 _RS08170 Position (kb) 1837 1838 1839 1840Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1836.109 kb on + strand, within LRK53_RS08160at 1836.109 kb on + strand, within LRK53_RS08160at 1836.110 kb on - strand, within LRK53_RS08160at 1836.110 kb on - strand, within LRK53_RS08160at 1836.110 kb on - strand, within LRK53_RS08160at 1836.110 kb on - strand, within LRK53_RS08160at 1836.110 kb on - strand, within LRK53_RS08160at 1836.170 kb on - strand, within LRK53_RS08160at 1836.170 kb on - strand, within LRK53_RS08160at 1836.670 kb on + strand, within LRK53_RS08160at 1836.671 kb on - strand, within LRK53_RS08160at 1836.671 kb on - strand, within LRK53_RS08160at 1836.671 kb on - strand, within LRK53_RS08160at 1836.715 kb on + strand, within LRK53_RS08160at 1836.715 kb on + strand, within LRK53_RS08160at 1836.715 kb on + strand, within LRK53_RS08160at 1836.715 kb on + strand, within LRK53_RS08160at 1836.715 kb on + strand, within LRK53_RS08160at 1836.715 kb on + strand, within LRK53_RS08160at 1836.715 kb on + strand, within LRK53_RS08160at 1836.716 kb on - strand, within LRK53_RS08160at 1836.716 kb on - strand, within LRK53_RS08160at 1836.716 kb on - strand, within LRK53_RS08160at 1836.936 kb on + strandat 1836.936 kb on + strandat 1836.936 kb on + strandat 1836.937 kb on - strandat 1836.953 kb on - strandat 1836.953 kb on - strandat 1837.014 kb on - strandat 1837.255 kb on + strandat 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.331 kb on + strand, within LRK53_RS08165at 1837.332 kb on - strand, within LRK53_RS08165at 1837.332 kb on - strand, within LRK53_RS08165at 1837.332 kb on - strand, within LRK53_RS08165at 1837.332 kb on - strand, within LRK53_RS08165at 1837.332 kb on - strand, within LRK53_RS08165at 1837.332 kb on - strand, within LRK53_RS08165at 1837.816 kb on - strand, within LRK53_RS08165at 1837.816 kb on - strand, within LRK53_RS08165at 1837.816 kb on - strand, within LRK53_RS08165at 1837.869 kb on - strand, within LRK53_RS08165at 1838.213 kb on + strand, within LRK53_RS08165at 1838.214 kb on - strand, within LRK53_RS08165at 1838.271 kb on - strand, within LRK53_RS08165at 1838.510 kb on + strand, within LRK53_RS08165at 1838.510 kb on + strand, within LRK53_RS08165at 1838.511 kb on - strand, within LRK53_RS08165at 1838.511 kb on - strand, within LRK53_RS08165at 1838.511 kb on - strand, within LRK53_RS08165at 1839.229 kb on + strandat 1839.230 kb on - strandat 1839.230 kb on - strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.288 kb on + strandat 1839.289 kb on - strandat 1839.289 kb on - strandat 1839.289 kb on - strandat 1839.289 kb on - strandat 1839.289 kb on - strandat 1839.289 kb on - strandat 1839.289 kb on - strandat 1839.582 kb on + strandat 1839.583 kb on - strandat 1839.583 kb on - strandat 1839.583 kb on - strandat 1839.583 kb on - strandat 1839.735 kb on + strand, within LRK53_RS08170at 1839.735 kb on + strand, within LRK53_RS08170at 1839.735 kb on + strand, within LRK53_RS08170at 1839.736 kb on - strand, within LRK53_RS08170at 1839.736 kb on - strand, within LRK53_RS08170at 1839.855 kb on + strand, within LRK53_RS08170at 1839.997 kb on - strand, within LRK53_RS08170at 1839.997 kb on - strand, within LRK53_RS08170at 1840.185 kb on + strand, within LRK53_RS08170at 1840.185 kb on + strand, within LRK53_RS08170at 1840.185 kb on + strand, within LRK53_RS08170at 1840.186 kb on - strand, within LRK53_RS08170at 1840.186 kb on - strand, within LRK53_RS08170at 1840.186 kb on - strand, within LRK53_RS08170at 1840.186 kb on - strand, within LRK53_RS08170at 1840.186 kb on - strand, within LRK53_RS08170

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,836,109 + LRK53_RS08160 0.13 -1.2
1,836,109 + LRK53_RS08160 0.13 +0.9
1,836,110 - LRK53_RS08160 0.13 -2.8
1,836,110 - LRK53_RS08160 0.13 -0.5
1,836,110 - LRK53_RS08160 0.13 -1.0
1,836,110 - LRK53_RS08160 0.13 -0.1
1,836,110 - LRK53_RS08160 0.13 -0.3
1,836,170 - LRK53_RS08160 0.20 -0.7
1,836,170 - LRK53_RS08160 0.20 -0.5
1,836,670 + LRK53_RS08160 0.73 +0.0
1,836,671 - LRK53_RS08160 0.73 -0.4
1,836,671 - LRK53_RS08160 0.73 -2.0
1,836,671 - LRK53_RS08160 0.73 -0.6
1,836,715 + LRK53_RS08160 0.78 +0.4
1,836,715 + LRK53_RS08160 0.78 +1.1
1,836,715 + LRK53_RS08160 0.78 -1.6
1,836,715 + LRK53_RS08160 0.78 -0.3
1,836,715 + LRK53_RS08160 0.78 -1.6
1,836,715 + LRK53_RS08160 0.78 +0.8
1,836,715 + LRK53_RS08160 0.78 -2.3
1,836,716 - LRK53_RS08160 0.78 +2.1
1,836,716 - LRK53_RS08160 0.78 +0.2
1,836,716 - LRK53_RS08160 0.78 -0.4
1,836,936 + -0.6
1,836,936 + +0.3
1,836,936 + -1.9
1,836,937 - +0.4
1,836,953 - +1.1
1,836,953 - +0.6
1,837,014 - -0.9
1,837,255 + +0.2
1,837,331 + LRK53_RS08165 0.10 -0.1
1,837,331 + LRK53_RS08165 0.10 +0.0
1,837,331 + LRK53_RS08165 0.10 -1.3
1,837,331 + LRK53_RS08165 0.10 -1.4
1,837,331 + LRK53_RS08165 0.10 -0.4
1,837,331 + LRK53_RS08165 0.10 -0.9
1,837,331 + LRK53_RS08165 0.10 -0.4
1,837,331 + LRK53_RS08165 0.10 +0.4
1,837,331 + LRK53_RS08165 0.10 -1.8
1,837,331 + LRK53_RS08165 0.10 -2.4
1,837,332 - LRK53_RS08165 0.10 +0.2
1,837,332 - LRK53_RS08165 0.10 -1.0
1,837,332 - LRK53_RS08165 0.10 -1.2
1,837,332 - LRK53_RS08165 0.10 -0.8
1,837,332 - LRK53_RS08165 0.10 -0.4
1,837,332 - LRK53_RS08165 0.10 -0.2
1,837,816 - LRK53_RS08165 0.33 -1.8
1,837,816 - LRK53_RS08165 0.33 -2.2
1,837,816 - LRK53_RS08165 0.33 +0.4
1,837,869 - LRK53_RS08165 0.36 -0.8
1,838,213 + LRK53_RS08165 0.52 -0.6
1,838,214 - LRK53_RS08165 0.52 -0.4
1,838,271 - LRK53_RS08165 0.54 +0.2
1,838,510 + LRK53_RS08165 0.65 -0.3
1,838,510 + LRK53_RS08165 0.65 -0.7
1,838,511 - LRK53_RS08165 0.65 -0.6
1,838,511 - LRK53_RS08165 0.65 -1.7
1,838,511 - LRK53_RS08165 0.65 -0.6
1,839,229 + -0.7
1,839,230 - +0.4
1,839,230 - -0.1
1,839,288 + -0.7
1,839,288 + -1.0
1,839,288 + -1.4
1,839,288 + +0.5
1,839,288 + +0.6
1,839,288 + +1.0
1,839,288 + -1.4
1,839,288 + +0.4
1,839,288 + -0.3
1,839,288 + -1.0
1,839,288 + -0.7
1,839,289 - -1.6
1,839,289 - -1.0
1,839,289 - -0.6
1,839,289 - -0.5
1,839,289 - +0.2
1,839,289 - -0.6
1,839,289 - -1.0
1,839,582 + -1.2
1,839,583 - -1.3
1,839,583 - -1.6
1,839,583 - -1.6
1,839,583 - -1.9
1,839,735 + LRK53_RS08170 0.24 -0.7
1,839,735 + LRK53_RS08170 0.24 +2.2
1,839,735 + LRK53_RS08170 0.24 -1.8
1,839,736 - LRK53_RS08170 0.24 +1.6
1,839,736 - LRK53_RS08170 0.24 +0.0
1,839,855 + LRK53_RS08170 0.37 -0.1
1,839,997 - LRK53_RS08170 0.52 -1.1
1,839,997 - LRK53_RS08170 0.52 -1.0
1,840,185 + LRK53_RS08170 0.72 -0.5
1,840,185 + LRK53_RS08170 0.72 +1.3
1,840,185 + LRK53_RS08170 0.72 -0.6
1,840,186 - LRK53_RS08170 0.72 -0.7
1,840,186 - LRK53_RS08170 0.72 -0.6
1,840,186 - LRK53_RS08170 0.72 +1.4
1,840,186 - LRK53_RS08170 0.72 +0.2
1,840,186 - LRK53_RS08170 0.72 -0.2

Or see this region's nucleotide sequence