Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08160 and LRK53_RS08165 are separated by 190 nucleotides LRK53_RS08165 and LRK53_RS08170 are separated by 259 nucleotides
LRK53_RS08160: LRK53_RS08160 - DMT family transporter, at 1,835,988 to 1,836,917
_RS08160
LRK53_RS08165: LRK53_RS08165 - AsmA family protein, at 1,837,108 to 1,839,249
_RS08165
LRK53_RS08170: LRK53_RS08170 - peptidylprolyl isomerase, at 1,839,509 to 1,840,444
_RS08170
Position (kb)
1837
1838
1839
1840 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1836.109 kb on + strand, within LRK53_RS08160 at 1836.109 kb on + strand, within LRK53_RS08160 at 1836.110 kb on - strand, within LRK53_RS08160 at 1836.110 kb on - strand, within LRK53_RS08160 at 1836.110 kb on - strand, within LRK53_RS08160 at 1836.110 kb on - strand, within LRK53_RS08160 at 1836.110 kb on - strand, within LRK53_RS08160 at 1836.170 kb on - strand, within LRK53_RS08160 at 1836.170 kb on - strand, within LRK53_RS08160 at 1836.670 kb on + strand, within LRK53_RS08160 at 1836.671 kb on - strand, within LRK53_RS08160 at 1836.671 kb on - strand, within LRK53_RS08160 at 1836.671 kb on - strand, within LRK53_RS08160 at 1836.715 kb on + strand, within LRK53_RS08160 at 1836.715 kb on + strand, within LRK53_RS08160 at 1836.715 kb on + strand, within LRK53_RS08160 at 1836.715 kb on + strand, within LRK53_RS08160 at 1836.715 kb on + strand, within LRK53_RS08160 at 1836.715 kb on + strand, within LRK53_RS08160 at 1836.715 kb on + strand, within LRK53_RS08160 at 1836.716 kb on - strand, within LRK53_RS08160 at 1836.716 kb on - strand, within LRK53_RS08160 at 1836.716 kb on - strand, within LRK53_RS08160 at 1836.936 kb on + strand at 1836.936 kb on + strand at 1836.936 kb on + strand at 1836.937 kb on - strand at 1836.953 kb on - strand at 1836.953 kb on - strand at 1837.014 kb on - strand at 1837.255 kb on + strand at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.331 kb on + strand, within LRK53_RS08165 at 1837.332 kb on - strand, within LRK53_RS08165 at 1837.332 kb on - strand, within LRK53_RS08165 at 1837.332 kb on - strand, within LRK53_RS08165 at 1837.332 kb on - strand, within LRK53_RS08165 at 1837.332 kb on - strand, within LRK53_RS08165 at 1837.332 kb on - strand, within LRK53_RS08165 at 1837.816 kb on - strand, within LRK53_RS08165 at 1837.816 kb on - strand, within LRK53_RS08165 at 1837.816 kb on - strand, within LRK53_RS08165 at 1837.869 kb on - strand, within LRK53_RS08165 at 1838.213 kb on + strand, within LRK53_RS08165 at 1838.214 kb on - strand, within LRK53_RS08165 at 1838.271 kb on - strand, within LRK53_RS08165 at 1838.510 kb on + strand, within LRK53_RS08165 at 1838.510 kb on + strand, within LRK53_RS08165 at 1838.511 kb on - strand, within LRK53_RS08165 at 1838.511 kb on - strand, within LRK53_RS08165 at 1838.511 kb on - strand, within LRK53_RS08165 at 1839.229 kb on + strand at 1839.230 kb on - strand at 1839.230 kb on - strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.288 kb on + strand at 1839.289 kb on - strand at 1839.289 kb on - strand at 1839.289 kb on - strand at 1839.289 kb on - strand at 1839.289 kb on - strand at 1839.289 kb on - strand at 1839.289 kb on - strand at 1839.582 kb on + strand at 1839.583 kb on - strand at 1839.583 kb on - strand at 1839.583 kb on - strand at 1839.583 kb on - strand at 1839.735 kb on + strand, within LRK53_RS08170 at 1839.735 kb on + strand, within LRK53_RS08170 at 1839.735 kb on + strand, within LRK53_RS08170 at 1839.736 kb on - strand, within LRK53_RS08170 at 1839.736 kb on - strand, within LRK53_RS08170 at 1839.855 kb on + strand, within LRK53_RS08170 at 1839.997 kb on - strand, within LRK53_RS08170 at 1839.997 kb on - strand, within LRK53_RS08170 at 1840.185 kb on + strand, within LRK53_RS08170 at 1840.185 kb on + strand, within LRK53_RS08170 at 1840.185 kb on + strand, within LRK53_RS08170 at 1840.186 kb on - strand, within LRK53_RS08170 at 1840.186 kb on - strand, within LRK53_RS08170 at 1840.186 kb on - strand, within LRK53_RS08170 at 1840.186 kb on - strand, within LRK53_RS08170 at 1840.186 kb on - strand, within LRK53_RS08170
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,836,109 + LRK53_RS08160 0.13 -1.2 1,836,109 + LRK53_RS08160 0.13 +0.9 1,836,110 - LRK53_RS08160 0.13 -2.8 1,836,110 - LRK53_RS08160 0.13 -0.5 1,836,110 - LRK53_RS08160 0.13 -1.0 1,836,110 - LRK53_RS08160 0.13 -0.1 1,836,110 - LRK53_RS08160 0.13 -0.3 1,836,170 - LRK53_RS08160 0.20 -0.7 1,836,170 - LRK53_RS08160 0.20 -0.5 1,836,670 + LRK53_RS08160 0.73 +0.0 1,836,671 - LRK53_RS08160 0.73 -0.4 1,836,671 - LRK53_RS08160 0.73 -2.0 1,836,671 - LRK53_RS08160 0.73 -0.6 1,836,715 + LRK53_RS08160 0.78 +0.4 1,836,715 + LRK53_RS08160 0.78 +1.1 1,836,715 + LRK53_RS08160 0.78 -1.6 1,836,715 + LRK53_RS08160 0.78 -0.3 1,836,715 + LRK53_RS08160 0.78 -1.6 1,836,715 + LRK53_RS08160 0.78 +0.8 1,836,715 + LRK53_RS08160 0.78 -2.3 1,836,716 - LRK53_RS08160 0.78 +2.1 1,836,716 - LRK53_RS08160 0.78 +0.2 1,836,716 - LRK53_RS08160 0.78 -0.4 1,836,936 + -0.6 1,836,936 + +0.3 1,836,936 + -1.9 1,836,937 - +0.4 1,836,953 - +1.1 1,836,953 - +0.6 1,837,014 - -0.9 1,837,255 + +0.2 1,837,331 + LRK53_RS08165 0.10 -0.1 1,837,331 + LRK53_RS08165 0.10 +0.0 1,837,331 + LRK53_RS08165 0.10 -1.3 1,837,331 + LRK53_RS08165 0.10 -1.4 1,837,331 + LRK53_RS08165 0.10 -0.4 1,837,331 + LRK53_RS08165 0.10 -0.9 1,837,331 + LRK53_RS08165 0.10 -0.4 1,837,331 + LRK53_RS08165 0.10 +0.4 1,837,331 + LRK53_RS08165 0.10 -1.8 1,837,331 + LRK53_RS08165 0.10 -2.4 1,837,332 - LRK53_RS08165 0.10 +0.2 1,837,332 - LRK53_RS08165 0.10 -1.0 1,837,332 - LRK53_RS08165 0.10 -1.2 1,837,332 - LRK53_RS08165 0.10 -0.8 1,837,332 - LRK53_RS08165 0.10 -0.4 1,837,332 - LRK53_RS08165 0.10 -0.2 1,837,816 - LRK53_RS08165 0.33 -1.8 1,837,816 - LRK53_RS08165 0.33 -2.2 1,837,816 - LRK53_RS08165 0.33 +0.4 1,837,869 - LRK53_RS08165 0.36 -0.8 1,838,213 + LRK53_RS08165 0.52 -0.6 1,838,214 - LRK53_RS08165 0.52 -0.4 1,838,271 - LRK53_RS08165 0.54 +0.2 1,838,510 + LRK53_RS08165 0.65 -0.3 1,838,510 + LRK53_RS08165 0.65 -0.7 1,838,511 - LRK53_RS08165 0.65 -0.6 1,838,511 - LRK53_RS08165 0.65 -1.7 1,838,511 - LRK53_RS08165 0.65 -0.6 1,839,229 + -0.7 1,839,230 - +0.4 1,839,230 - -0.1 1,839,288 + -0.7 1,839,288 + -1.0 1,839,288 + -1.4 1,839,288 + +0.5 1,839,288 + +0.6 1,839,288 + +1.0 1,839,288 + -1.4 1,839,288 + +0.4 1,839,288 + -0.3 1,839,288 + -1.0 1,839,288 + -0.7 1,839,289 - -1.6 1,839,289 - -1.0 1,839,289 - -0.6 1,839,289 - -0.5 1,839,289 - +0.2 1,839,289 - -0.6 1,839,289 - -1.0 1,839,582 + -1.2 1,839,583 - -1.3 1,839,583 - -1.6 1,839,583 - -1.6 1,839,583 - -1.9 1,839,735 + LRK53_RS08170 0.24 -0.7 1,839,735 + LRK53_RS08170 0.24 +2.2 1,839,735 + LRK53_RS08170 0.24 -1.8 1,839,736 - LRK53_RS08170 0.24 +1.6 1,839,736 - LRK53_RS08170 0.24 +0.0 1,839,855 + LRK53_RS08170 0.37 -0.1 1,839,997 - LRK53_RS08170 0.52 -1.1 1,839,997 - LRK53_RS08170 0.52 -1.0 1,840,185 + LRK53_RS08170 0.72 -0.5 1,840,185 + LRK53_RS08170 0.72 +1.3 1,840,185 + LRK53_RS08170 0.72 -0.6 1,840,186 - LRK53_RS08170 0.72 -0.7 1,840,186 - LRK53_RS08170 0.72 -0.6 1,840,186 - LRK53_RS08170 0.72 +1.4 1,840,186 - LRK53_RS08170 0.72 +0.2 1,840,186 - LRK53_RS08170 0.72 -0.2
Or see this region's nucleotide sequence