Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07165

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07160 and LRK53_RS07165 overlap by 4 nucleotidesLRK53_RS07165 and LRK53_RS07170 are separated by 92 nucleotides LRK53_RS07160: LRK53_RS07160 - MlaD family protein, at 1,611,489 to 1,613,189 _RS07160 LRK53_RS07165: LRK53_RS07165 - PqiC family protein, at 1,613,186 to 1,613,812 _RS07165 LRK53_RS07170: LRK53_RS07170 - leucine--tRNA ligase, at 1,613,905 to 1,616,727 _RS07170 Position (kb) 1613 1614Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1612.329 kb on + strand, within LRK53_RS07160at 1612.330 kb on - strand, within LRK53_RS07160at 1612.330 kb on - strand, within LRK53_RS07160at 1612.330 kb on - strand, within LRK53_RS07160at 1612.386 kb on + strand, within LRK53_RS07160at 1612.386 kb on + strand, within LRK53_RS07160at 1612.386 kb on + strand, within LRK53_RS07160at 1612.386 kb on + strand, within LRK53_RS07160at 1612.387 kb on - strand, within LRK53_RS07160at 1612.387 kb on - strand, within LRK53_RS07160at 1612.387 kb on - strand, within LRK53_RS07160at 1612.387 kb on - strand, within LRK53_RS07160at 1612.387 kb on - strand, within LRK53_RS07160at 1612.387 kb on - strand, within LRK53_RS07160at 1612.387 kb on - strand, within LRK53_RS07160at 1612.491 kb on + strand, within LRK53_RS07160at 1612.491 kb on + strand, within LRK53_RS07160at 1612.492 kb on - strand, within LRK53_RS07160at 1612.492 kb on - strand, within LRK53_RS07160at 1612.492 kb on - strand, within LRK53_RS07160at 1612.492 kb on - strand, within LRK53_RS07160at 1612.492 kb on - strand, within LRK53_RS07160at 1612.539 kb on + strand, within LRK53_RS07160at 1612.540 kb on - strand, within LRK53_RS07160at 1612.563 kb on + strand, within LRK53_RS07160at 1612.563 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.692 kb on + strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1612.693 kb on - strand, within LRK53_RS07160at 1613.071 kb on - strandat 1613.195 kb on - strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.204 kb on + strandat 1613.205 kb on - strandat 1613.205 kb on - strandat 1613.205 kb on - strandat 1613.205 kb on - strandat 1613.205 kb on - strandat 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.264 kb on + strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.265 kb on - strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.267 kb on + strand, within LRK53_RS07165at 1613.268 kb on - strand, within LRK53_RS07165at 1613.268 kb on - strand, within LRK53_RS07165at 1613.268 kb on - strand, within LRK53_RS07165at 1613.268 kb on - strand, within LRK53_RS07165at 1613.268 kb on - strand, within LRK53_RS07165at 1613.268 kb on - strand, within LRK53_RS07165at 1613.268 kb on - strand, within LRK53_RS07165at 1613.597 kb on + strand, within LRK53_RS07165at 1613.597 kb on + strand, within LRK53_RS07165at 1613.597 kb on + strand, within LRK53_RS07165at 1613.597 kb on + strand, within LRK53_RS07165at 1613.597 kb on + strand, within LRK53_RS07165at 1613.597 kb on + strand, within LRK53_RS07165at 1613.598 kb on - strand, within LRK53_RS07165at 1613.598 kb on - strand, within LRK53_RS07165at 1613.598 kb on - strand, within LRK53_RS07165at 1613.848 kb on + strandat 1613.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,612,329 + LRK53_RS07160 0.49 -0.7
1,612,330 - LRK53_RS07160 0.49 -0.6
1,612,330 - LRK53_RS07160 0.49 +0.0
1,612,330 - LRK53_RS07160 0.49 -1.0
1,612,386 + LRK53_RS07160 0.53 -2.0
1,612,386 + LRK53_RS07160 0.53 +0.6
1,612,386 + LRK53_RS07160 0.53 -0.1
1,612,386 + LRK53_RS07160 0.53 +0.3
1,612,387 - LRK53_RS07160 0.53 -0.7
1,612,387 - LRK53_RS07160 0.53 +0.9
1,612,387 - LRK53_RS07160 0.53 +1.5
1,612,387 - LRK53_RS07160 0.53 -1.4
1,612,387 - LRK53_RS07160 0.53 -1.0
1,612,387 - LRK53_RS07160 0.53 +0.9
1,612,387 - LRK53_RS07160 0.53 +0.8
1,612,491 + LRK53_RS07160 0.59 +0.4
1,612,491 + LRK53_RS07160 0.59 -1.2
1,612,492 - LRK53_RS07160 0.59 -1.0
1,612,492 - LRK53_RS07160 0.59 -0.5
1,612,492 - LRK53_RS07160 0.59 -0.6
1,612,492 - LRK53_RS07160 0.59 -0.7
1,612,492 - LRK53_RS07160 0.59 -0.1
1,612,539 + LRK53_RS07160 0.62 -0.4
1,612,540 - LRK53_RS07160 0.62 -2.1
1,612,563 + LRK53_RS07160 0.63 -0.6
1,612,563 + LRK53_RS07160 0.63 -1.5
1,612,692 + LRK53_RS07160 0.71 -2.5
1,612,692 + LRK53_RS07160 0.71 +0.0
1,612,692 + LRK53_RS07160 0.71 -1.2
1,612,692 + LRK53_RS07160 0.71 -1.3
1,612,692 + LRK53_RS07160 0.71 +1.9
1,612,692 + LRK53_RS07160 0.71 +1.4
1,612,692 + LRK53_RS07160 0.71 +0.2
1,612,692 + LRK53_RS07160 0.71 +0.5
1,612,692 + LRK53_RS07160 0.71 -0.4
1,612,692 + LRK53_RS07160 0.71 -2.0
1,612,692 + LRK53_RS07160 0.71 +0.2
1,612,692 + LRK53_RS07160 0.71 +1.1
1,612,692 + LRK53_RS07160 0.71 -2.1
1,612,692 + LRK53_RS07160 0.71 -1.8
1,612,692 + LRK53_RS07160 0.71 +1.7
1,612,692 + LRK53_RS07160 0.71 +0.8
1,612,692 + LRK53_RS07160 0.71 +0.3
1,612,692 + LRK53_RS07160 0.71 -0.1
1,612,692 + LRK53_RS07160 0.71 +0.6
1,612,692 + LRK53_RS07160 0.71 +0.4
1,612,692 + LRK53_RS07160 0.71 +0.5
1,612,692 + LRK53_RS07160 0.71 -1.7
1,612,692 + LRK53_RS07160 0.71 +0.5
1,612,692 + LRK53_RS07160 0.71 +0.2
1,612,692 + LRK53_RS07160 0.71 -1.9
1,612,692 + LRK53_RS07160 0.71 +0.8
1,612,692 + LRK53_RS07160 0.71 -1.2
1,612,693 - LRK53_RS07160 0.71 -0.6
1,612,693 - LRK53_RS07160 0.71 +0.7
1,612,693 - LRK53_RS07160 0.71 -1.3
1,612,693 - LRK53_RS07160 0.71 +1.3
1,612,693 - LRK53_RS07160 0.71 -1.1
1,612,693 - LRK53_RS07160 0.71 -0.8
1,612,693 - LRK53_RS07160 0.71 +0.0
1,612,693 - LRK53_RS07160 0.71 -0.7
1,612,693 - LRK53_RS07160 0.71 -1.3
1,612,693 - LRK53_RS07160 0.71 -0.6
1,612,693 - LRK53_RS07160 0.71 -0.2
1,612,693 - LRK53_RS07160 0.71 -1.1
1,612,693 - LRK53_RS07160 0.71 +0.2
1,612,693 - LRK53_RS07160 0.71 +1.7
1,612,693 - LRK53_RS07160 0.71 +0.8
1,612,693 - LRK53_RS07160 0.71 -0.2
1,612,693 - LRK53_RS07160 0.71 -0.2
1,612,693 - LRK53_RS07160 0.71 -1.2
1,612,693 - LRK53_RS07160 0.71 -0.7
1,612,693 - LRK53_RS07160 0.71 -1.0
1,612,693 - LRK53_RS07160 0.71 +0.1
1,612,693 - LRK53_RS07160 0.71 +2.8
1,613,071 - -1.1
1,613,195 - -0.1
1,613,204 + -1.0
1,613,204 + -0.0
1,613,204 + -0.3
1,613,204 + -1.1
1,613,204 + -0.5
1,613,204 + -0.0
1,613,204 + +1.4
1,613,204 + -1.2
1,613,204 + -0.2
1,613,204 + -0.8
1,613,204 + -1.4
1,613,205 - +0.4
1,613,205 - -1.3
1,613,205 - -0.0
1,613,205 - +0.6
1,613,205 - -1.1
1,613,264 + LRK53_RS07165 0.12 -0.8
1,613,264 + LRK53_RS07165 0.12 +0.0
1,613,264 + LRK53_RS07165 0.12 -1.9
1,613,264 + LRK53_RS07165 0.12 -1.2
1,613,264 + LRK53_RS07165 0.12 -0.4
1,613,264 + LRK53_RS07165 0.12 +0.6
1,613,264 + LRK53_RS07165 0.12 +0.2
1,613,264 + LRK53_RS07165 0.12 -0.3
1,613,264 + LRK53_RS07165 0.12 +0.2
1,613,264 + LRK53_RS07165 0.12 -1.4
1,613,265 - LRK53_RS07165 0.13 -0.6
1,613,265 - LRK53_RS07165 0.13 -1.6
1,613,265 - LRK53_RS07165 0.13 -1.6
1,613,265 - LRK53_RS07165 0.13 +0.4
1,613,265 - LRK53_RS07165 0.13 -1.3
1,613,265 - LRK53_RS07165 0.13 +0.2
1,613,265 - LRK53_RS07165 0.13 -0.4
1,613,265 - LRK53_RS07165 0.13 -1.1
1,613,267 + LRK53_RS07165 0.13 -0.4
1,613,267 + LRK53_RS07165 0.13 -0.9
1,613,267 + LRK53_RS07165 0.13 +1.2
1,613,267 + LRK53_RS07165 0.13 +0.4
1,613,267 + LRK53_RS07165 0.13 -1.5
1,613,267 + LRK53_RS07165 0.13 +0.0
1,613,267 + LRK53_RS07165 0.13 -1.3
1,613,267 + LRK53_RS07165 0.13 -1.2
1,613,267 + LRK53_RS07165 0.13 -0.6
1,613,267 + LRK53_RS07165 0.13 -1.2
1,613,268 - LRK53_RS07165 0.13 -1.7
1,613,268 - LRK53_RS07165 0.13 +1.5
1,613,268 - LRK53_RS07165 0.13 -1.0
1,613,268 - LRK53_RS07165 0.13 -0.1
1,613,268 - LRK53_RS07165 0.13 -1.0
1,613,268 - LRK53_RS07165 0.13 -0.1
1,613,268 - LRK53_RS07165 0.13 -2.5
1,613,597 + LRK53_RS07165 0.66 -2.2
1,613,597 + LRK53_RS07165 0.66 -1.1
1,613,597 + LRK53_RS07165 0.66 -0.4
1,613,597 + LRK53_RS07165 0.66 -0.6
1,613,597 + LRK53_RS07165 0.66 +0.2
1,613,597 + LRK53_RS07165 0.66 -1.1
1,613,598 - LRK53_RS07165 0.66 -1.7
1,613,598 - LRK53_RS07165 0.66 -2.3
1,613,598 - LRK53_RS07165 0.66 +0.4
1,613,848 + -0.1
1,613,849 - -1.6

Or see this region's nucleotide sequence