Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05815

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05805 and LRK53_RS05810 are separated by 128 nucleotidesLRK53_RS05810 and LRK53_RS05815 are separated by 94 nucleotidesLRK53_RS05815 and LRK53_RS05820 are separated by 56 nucleotides LRK53_RS05805: LRK53_RS05805 - hypothetical protein, at 1,347,207 to 1,347,701 _RS05805 LRK53_RS05810: LRK53_RS05810 - DUF4097 family beta strand repeat-containing protein, at 1,347,830 to 1,348,606 _RS05810 LRK53_RS05815: LRK53_RS05815 - citrate transporter, at 1,348,701 to 1,349,819 _RS05815 LRK53_RS05820: LRK53_RS05820 - FtsX-like permease family protein, at 1,349,876 to 1,352,359 _RS05820 Position (kb) 1348 1349 1350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1347.718 kb on - strandat 1347.721 kb on + strandat 1347.721 kb on + strandat 1347.721 kb on + strandat 1347.721 kb on + strandat 1347.721 kb on + strandat 1347.721 kb on + strandat 1347.721 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.722 kb on - strandat 1347.899 kb on + strandat 1347.899 kb on + strandat 1347.899 kb on + strandat 1347.899 kb on + strandat 1347.899 kb on + strandat 1347.899 kb on + strandat 1347.899 kb on + strandat 1347.899 kb on + strandat 1347.900 kb on - strandat 1347.900 kb on - strandat 1347.900 kb on - strandat 1347.900 kb on - strandat 1347.900 kb on - strandat 1348.151 kb on + strand, within LRK53_RS05810at 1348.151 kb on + strand, within LRK53_RS05810at 1348.152 kb on - strand, within LRK53_RS05810at 1348.152 kb on - strand, within LRK53_RS05810at 1348.152 kb on - strand, within LRK53_RS05810at 1348.281 kb on + strand, within LRK53_RS05810at 1348.282 kb on - strand, within LRK53_RS05810at 1348.282 kb on - strand, within LRK53_RS05810at 1348.282 kb on - strand, within LRK53_RS05810at 1348.649 kb on + strandat 1348.649 kb on + strandat 1348.649 kb on + strandat 1348.650 kb on - strandat 1348.650 kb on - strandat 1348.670 kb on + strandat 1348.670 kb on + strandat 1348.670 kb on + strandat 1348.671 kb on - strandat 1348.671 kb on - strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.726 kb on + strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.727 kb on - strandat 1348.963 kb on + strand, within LRK53_RS05815at 1348.963 kb on + strand, within LRK53_RS05815at 1348.964 kb on - strand, within LRK53_RS05815at 1348.964 kb on - strand, within LRK53_RS05815at 1348.964 kb on - strand, within LRK53_RS05815at 1348.964 kb on - strand, within LRK53_RS05815at 1349.019 kb on + strand, within LRK53_RS05815at 1349.020 kb on - strand, within LRK53_RS05815at 1349.158 kb on + strand, within LRK53_RS05815at 1349.158 kb on + strand, within LRK53_RS05815at 1349.158 kb on + strand, within LRK53_RS05815at 1349.158 kb on + strand, within LRK53_RS05815at 1349.158 kb on + strand, within LRK53_RS05815at 1349.158 kb on + strand, within LRK53_RS05815at 1349.158 kb on + strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.159 kb on - strand, within LRK53_RS05815at 1349.223 kb on + strand, within LRK53_RS05815at 1349.500 kb on - strand, within LRK53_RS05815at 1349.711 kb on - strandat 1349.851 kb on + strandat 1349.851 kb on + strandat 1349.851 kb on + strandat 1349.851 kb on + strandat 1349.852 kb on - strandat 1349.852 kb on - strandat 1349.852 kb on - strandat 1349.877 kb on + strandat 1349.877 kb on + strandat 1349.877 kb on + strandat 1349.877 kb on + strandat 1349.877 kb on + strandat 1349.878 kb on - strandat 1349.878 kb on - strandat 1349.878 kb on - strandat 1349.878 kb on - strandat 1349.878 kb on - strandat 1349.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,347,718 - +0.8
1,347,721 + -0.7
1,347,721 + +0.2
1,347,721 + -0.5
1,347,721 + -0.8
1,347,721 + -1.2
1,347,721 + -1.5
1,347,721 - -0.4
1,347,722 - +0.7
1,347,722 - -0.5
1,347,722 - +0.2
1,347,722 - -1.1
1,347,722 - -1.8
1,347,722 - -0.6
1,347,722 - -0.8
1,347,722 - +0.4
1,347,722 - -1.2
1,347,722 - -0.9
1,347,722 - -2.1
1,347,722 - -0.1
1,347,899 + -1.1
1,347,899 + -0.2
1,347,899 + +2.0
1,347,899 + +0.2
1,347,899 + -2.0
1,347,899 + +2.0
1,347,899 + +0.1
1,347,899 + -0.9
1,347,900 - +0.0
1,347,900 - -0.9
1,347,900 - +0.7
1,347,900 - -0.1
1,347,900 - -0.1
1,348,151 + LRK53_RS05810 0.41 -1.3
1,348,151 + LRK53_RS05810 0.41 -2.6
1,348,152 - LRK53_RS05810 0.41 -0.2
1,348,152 - LRK53_RS05810 0.41 -1.3
1,348,152 - LRK53_RS05810 0.41 +1.7
1,348,281 + LRK53_RS05810 0.58 +0.3
1,348,282 - LRK53_RS05810 0.58 -1.4
1,348,282 - LRK53_RS05810 0.58 -2.2
1,348,282 - LRK53_RS05810 0.58 -3.7
1,348,649 + -2.4
1,348,649 + +1.4
1,348,649 + -0.1
1,348,650 - -1.6
1,348,650 - -0.2
1,348,670 + +1.9
1,348,670 + -1.4
1,348,670 + +0.3
1,348,671 - +0.6
1,348,671 - +0.9
1,348,726 + -1.5
1,348,726 + -0.2
1,348,726 + +1.1
1,348,726 + -0.6
1,348,726 + -0.8
1,348,726 + +0.5
1,348,726 + -1.0
1,348,726 + -0.1
1,348,726 + +0.8
1,348,727 - +0.7
1,348,727 - +1.1
1,348,727 - +0.0
1,348,727 - +2.2
1,348,727 - +1.2
1,348,727 - -0.8
1,348,727 - -0.6
1,348,727 - -2.4
1,348,727 - +0.3
1,348,727 - +0.2
1,348,963 + LRK53_RS05815 0.23 -0.9
1,348,963 + LRK53_RS05815 0.23 -1.4
1,348,964 - LRK53_RS05815 0.24 -0.9
1,348,964 - LRK53_RS05815 0.24 -0.3
1,348,964 - LRK53_RS05815 0.24 -1.1
1,348,964 - LRK53_RS05815 0.24 -1.7
1,349,019 + LRK53_RS05815 0.28 +0.1
1,349,020 - LRK53_RS05815 0.29 -0.4
1,349,158 + LRK53_RS05815 0.41 -2.1
1,349,158 + LRK53_RS05815 0.41 -1.8
1,349,158 + LRK53_RS05815 0.41 -0.3
1,349,158 + LRK53_RS05815 0.41 +2.0
1,349,158 + LRK53_RS05815 0.41 -0.7
1,349,158 + LRK53_RS05815 0.41 +0.9
1,349,158 + LRK53_RS05815 0.41 +1.0
1,349,159 - LRK53_RS05815 0.41 -0.9
1,349,159 - LRK53_RS05815 0.41 -0.8
1,349,159 - LRK53_RS05815 0.41 -0.9
1,349,159 - LRK53_RS05815 0.41 -2.0
1,349,159 - LRK53_RS05815 0.41 +1.1
1,349,159 - LRK53_RS05815 0.41 -1.1
1,349,159 - LRK53_RS05815 0.41 -2.0
1,349,159 - LRK53_RS05815 0.41 -0.6
1,349,159 - LRK53_RS05815 0.41 -0.3
1,349,159 - LRK53_RS05815 0.41 -1.1
1,349,159 - LRK53_RS05815 0.41 -0.2
1,349,159 - LRK53_RS05815 0.41 -1.3
1,349,223 + LRK53_RS05815 0.47 -0.3
1,349,500 - LRK53_RS05815 0.71 -1.5
1,349,711 - -1.0
1,349,851 + -2.1
1,349,851 + +0.4
1,349,851 + -1.1
1,349,851 + +0.2
1,349,852 - -0.4
1,349,852 - -0.9
1,349,852 - +0.7
1,349,877 + -0.3
1,349,877 + -1.6
1,349,877 + -1.4
1,349,877 + -0.6
1,349,877 + -0.2
1,349,878 - -0.1
1,349,878 - -0.9
1,349,878 - -1.5
1,349,878 - -1.5
1,349,878 - +1.6
1,349,878 - -0.3

Or see this region's nucleotide sequence