Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05805 and LRK53_RS05810 are separated by 128 nucleotides LRK53_RS05810 and LRK53_RS05815 are separated by 94 nucleotides LRK53_RS05815 and LRK53_RS05820 are separated by 56 nucleotides
LRK53_RS05805: LRK53_RS05805 - hypothetical protein, at 1,347,207 to 1,347,701
_RS05805
LRK53_RS05810: LRK53_RS05810 - DUF4097 family beta strand repeat-containing protein, at 1,347,830 to 1,348,606
_RS05810
LRK53_RS05815: LRK53_RS05815 - citrate transporter, at 1,348,701 to 1,349,819
_RS05815
LRK53_RS05820: LRK53_RS05820 - FtsX-like permease family protein, at 1,349,876 to 1,352,359
_RS05820
Position (kb)
1348
1349
1350 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1347.718 kb on - strand at 1347.721 kb on + strand at 1347.721 kb on + strand at 1347.721 kb on + strand at 1347.721 kb on + strand at 1347.721 kb on + strand at 1347.721 kb on + strand at 1347.721 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.722 kb on - strand at 1347.899 kb on + strand at 1347.899 kb on + strand at 1347.899 kb on + strand at 1347.899 kb on + strand at 1347.899 kb on + strand at 1347.899 kb on + strand at 1347.899 kb on + strand at 1347.899 kb on + strand at 1347.900 kb on - strand at 1347.900 kb on - strand at 1347.900 kb on - strand at 1347.900 kb on - strand at 1347.900 kb on - strand at 1348.151 kb on + strand, within LRK53_RS05810 at 1348.151 kb on + strand, within LRK53_RS05810 at 1348.152 kb on - strand, within LRK53_RS05810 at 1348.152 kb on - strand, within LRK53_RS05810 at 1348.152 kb on - strand, within LRK53_RS05810 at 1348.281 kb on + strand, within LRK53_RS05810 at 1348.282 kb on - strand, within LRK53_RS05810 at 1348.282 kb on - strand, within LRK53_RS05810 at 1348.282 kb on - strand, within LRK53_RS05810 at 1348.649 kb on + strand at 1348.649 kb on + strand at 1348.649 kb on + strand at 1348.650 kb on - strand at 1348.650 kb on - strand at 1348.670 kb on + strand at 1348.670 kb on + strand at 1348.670 kb on + strand at 1348.671 kb on - strand at 1348.671 kb on - strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.726 kb on + strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.727 kb on - strand at 1348.963 kb on + strand, within LRK53_RS05815 at 1348.963 kb on + strand, within LRK53_RS05815 at 1348.964 kb on - strand, within LRK53_RS05815 at 1348.964 kb on - strand, within LRK53_RS05815 at 1348.964 kb on - strand, within LRK53_RS05815 at 1348.964 kb on - strand, within LRK53_RS05815 at 1349.019 kb on + strand, within LRK53_RS05815 at 1349.020 kb on - strand, within LRK53_RS05815 at 1349.158 kb on + strand, within LRK53_RS05815 at 1349.158 kb on + strand, within LRK53_RS05815 at 1349.158 kb on + strand, within LRK53_RS05815 at 1349.158 kb on + strand, within LRK53_RS05815 at 1349.158 kb on + strand, within LRK53_RS05815 at 1349.158 kb on + strand, within LRK53_RS05815 at 1349.158 kb on + strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.159 kb on - strand, within LRK53_RS05815 at 1349.223 kb on + strand, within LRK53_RS05815 at 1349.500 kb on - strand, within LRK53_RS05815 at 1349.711 kb on - strand at 1349.851 kb on + strand at 1349.851 kb on + strand at 1349.851 kb on + strand at 1349.851 kb on + strand at 1349.852 kb on - strand at 1349.852 kb on - strand at 1349.852 kb on - strand at 1349.877 kb on + strand at 1349.877 kb on + strand at 1349.877 kb on + strand at 1349.877 kb on + strand at 1349.877 kb on + strand at 1349.878 kb on - strand at 1349.878 kb on - strand at 1349.878 kb on - strand at 1349.878 kb on - strand at 1349.878 kb on - strand at 1349.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,347,718 - +0.8 1,347,721 + -0.7 1,347,721 + +0.2 1,347,721 + -0.5 1,347,721 + -0.8 1,347,721 + -1.2 1,347,721 + -1.5 1,347,721 - -0.4 1,347,722 - +0.7 1,347,722 - -0.5 1,347,722 - +0.2 1,347,722 - -1.1 1,347,722 - -1.8 1,347,722 - -0.6 1,347,722 - -0.8 1,347,722 - +0.4 1,347,722 - -1.2 1,347,722 - -0.9 1,347,722 - -2.1 1,347,722 - -0.1 1,347,899 + -1.1 1,347,899 + -0.2 1,347,899 + +2.0 1,347,899 + +0.2 1,347,899 + -2.0 1,347,899 + +2.0 1,347,899 + +0.1 1,347,899 + -0.9 1,347,900 - +0.0 1,347,900 - -0.9 1,347,900 - +0.7 1,347,900 - -0.1 1,347,900 - -0.1 1,348,151 + LRK53_RS05810 0.41 -1.3 1,348,151 + LRK53_RS05810 0.41 -2.6 1,348,152 - LRK53_RS05810 0.41 -0.2 1,348,152 - LRK53_RS05810 0.41 -1.3 1,348,152 - LRK53_RS05810 0.41 +1.7 1,348,281 + LRK53_RS05810 0.58 +0.3 1,348,282 - LRK53_RS05810 0.58 -1.4 1,348,282 - LRK53_RS05810 0.58 -2.2 1,348,282 - LRK53_RS05810 0.58 -3.7 1,348,649 + -2.4 1,348,649 + +1.4 1,348,649 + -0.1 1,348,650 - -1.6 1,348,650 - -0.2 1,348,670 + +1.9 1,348,670 + -1.4 1,348,670 + +0.3 1,348,671 - +0.6 1,348,671 - +0.9 1,348,726 + -1.5 1,348,726 + -0.2 1,348,726 + +1.1 1,348,726 + -0.6 1,348,726 + -0.8 1,348,726 + +0.5 1,348,726 + -1.0 1,348,726 + -0.1 1,348,726 + +0.8 1,348,727 - +0.7 1,348,727 - +1.1 1,348,727 - +0.0 1,348,727 - +2.2 1,348,727 - +1.2 1,348,727 - -0.8 1,348,727 - -0.6 1,348,727 - -2.4 1,348,727 - +0.3 1,348,727 - +0.2 1,348,963 + LRK53_RS05815 0.23 -0.9 1,348,963 + LRK53_RS05815 0.23 -1.4 1,348,964 - LRK53_RS05815 0.24 -0.9 1,348,964 - LRK53_RS05815 0.24 -0.3 1,348,964 - LRK53_RS05815 0.24 -1.1 1,348,964 - LRK53_RS05815 0.24 -1.7 1,349,019 + LRK53_RS05815 0.28 +0.1 1,349,020 - LRK53_RS05815 0.29 -0.4 1,349,158 + LRK53_RS05815 0.41 -2.1 1,349,158 + LRK53_RS05815 0.41 -1.8 1,349,158 + LRK53_RS05815 0.41 -0.3 1,349,158 + LRK53_RS05815 0.41 +2.0 1,349,158 + LRK53_RS05815 0.41 -0.7 1,349,158 + LRK53_RS05815 0.41 +0.9 1,349,158 + LRK53_RS05815 0.41 +1.0 1,349,159 - LRK53_RS05815 0.41 -0.9 1,349,159 - LRK53_RS05815 0.41 -0.8 1,349,159 - LRK53_RS05815 0.41 -0.9 1,349,159 - LRK53_RS05815 0.41 -2.0 1,349,159 - LRK53_RS05815 0.41 +1.1 1,349,159 - LRK53_RS05815 0.41 -1.1 1,349,159 - LRK53_RS05815 0.41 -2.0 1,349,159 - LRK53_RS05815 0.41 -0.6 1,349,159 - LRK53_RS05815 0.41 -0.3 1,349,159 - LRK53_RS05815 0.41 -1.1 1,349,159 - LRK53_RS05815 0.41 -0.2 1,349,159 - LRK53_RS05815 0.41 -1.3 1,349,223 + LRK53_RS05815 0.47 -0.3 1,349,500 - LRK53_RS05815 0.71 -1.5 1,349,711 - -1.0 1,349,851 + -2.1 1,349,851 + +0.4 1,349,851 + -1.1 1,349,851 + +0.2 1,349,852 - -0.4 1,349,852 - -0.9 1,349,852 - +0.7 1,349,877 + -0.3 1,349,877 + -1.6 1,349,877 + -1.4 1,349,877 + -0.6 1,349,877 + -0.2 1,349,878 - -0.1 1,349,878 - -0.9 1,349,878 - -1.5 1,349,878 - -1.5 1,349,878 - +1.6 1,349,878 - -0.3
Or see this region's nucleotide sequence