Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05755

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05750 and LRK53_RS05755 overlap by 8 nucleotidesLRK53_RS05755 and LRK53_RS05760 overlap by 4 nucleotidesLRK53_RS05760 and LRK53_RS05765 are separated by 22 nucleotides LRK53_RS05750: LRK53_RS05750 - Hpt domain-containing protein, at 1,332,429 to 1,338,527 _RS05750 LRK53_RS05755: LRK53_RS05755 - chemotaxis protein CheB, at 1,338,520 to 1,340,175 _RS05755 LRK53_RS05760: LRK53_RS05760 - chemotaxis protein CheW, at 1,340,172 to 1,340,681 _RS05760 LRK53_RS05765: LRK53_RS05765 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,340,704 to 1,341,438 _RS05765 Position (kb) 1338 1339 1340 1341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1337.787 kb on + strand, within LRK53_RS05750at 1337.787 kb on + strand, within LRK53_RS05750at 1337.788 kb on - strand, within LRK53_RS05750at 1337.788 kb on - strand, within LRK53_RS05750at 1337.802 kb on + strand, within LRK53_RS05750at 1337.802 kb on + strand, within LRK53_RS05750at 1337.803 kb on - strand, within LRK53_RS05750at 1338.213 kb on + strandat 1338.213 kb on + strandat 1338.214 kb on - strandat 1338.214 kb on - strandat 1338.438 kb on + strandat 1338.439 kb on - strandat 1338.453 kb on + strandat 1338.528 kb on + strandat 1338.727 kb on + strand, within LRK53_RS05755at 1338.727 kb on + strand, within LRK53_RS05755at 1338.727 kb on + strand, within LRK53_RS05755at 1338.727 kb on + strand, within LRK53_RS05755at 1338.727 kb on + strand, within LRK53_RS05755at 1338.728 kb on - strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1340.416 kb on + strand, within LRK53_RS05760

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,337,787 + LRK53_RS05750 0.88 -2.1
1,337,787 + LRK53_RS05750 0.88 +0.0
1,337,788 - LRK53_RS05750 0.88 -1.5
1,337,788 - LRK53_RS05750 0.88 -0.9
1,337,802 + LRK53_RS05750 0.88 -0.9
1,337,802 + LRK53_RS05750 0.88 -1.8
1,337,803 - LRK53_RS05750 0.88 +0.3
1,338,213 + -0.8
1,338,213 + -0.6
1,338,214 - -0.5
1,338,214 - +0.6
1,338,438 + -1.5
1,338,439 - -1.4
1,338,453 + -1.1
1,338,528 + -1.3
1,338,727 + LRK53_RS05755 0.12 -0.8
1,338,727 + LRK53_RS05755 0.12 -1.4
1,338,727 + LRK53_RS05755 0.12 +0.3
1,338,727 + LRK53_RS05755 0.12 -0.6
1,338,727 + LRK53_RS05755 0.12 -1.4
1,338,728 - LRK53_RS05755 0.13 +1.9
1,339,538 + LRK53_RS05755 0.61 -0.6
1,339,538 + LRK53_RS05755 0.61 -0.4
1,339,538 + LRK53_RS05755 0.61 -1.3
1,339,538 + LRK53_RS05755 0.61 -2.0
1,339,538 + LRK53_RS05755 0.61 -1.1
1,339,538 + LRK53_RS05755 0.61 -3.4
1,339,538 + LRK53_RS05755 0.61 +0.3
1,339,538 + LRK53_RS05755 0.61 -1.7
1,339,539 - LRK53_RS05755 0.62 -1.7
1,339,539 - LRK53_RS05755 0.62 -0.6
1,339,539 - LRK53_RS05755 0.62 -0.8
1,339,539 - LRK53_RS05755 0.62 -0.6
1,339,539 - LRK53_RS05755 0.62 +0.4
1,339,539 - LRK53_RS05755 0.62 -1.2
1,339,539 - LRK53_RS05755 0.62 -1.2
1,339,573 + LRK53_RS05755 0.64 -0.4
1,339,573 + LRK53_RS05755 0.64 +0.1
1,339,573 + LRK53_RS05755 0.64 -1.3
1,339,573 + LRK53_RS05755 0.64 +0.9
1,339,573 + LRK53_RS05755 0.64 -1.6
1,339,573 + LRK53_RS05755 0.64 -0.8
1,339,573 + LRK53_RS05755 0.64 -1.0
1,339,573 + LRK53_RS05755 0.64 -0.6
1,339,573 + LRK53_RS05755 0.64 -1.8
1,339,573 + LRK53_RS05755 0.64 +0.8
1,339,573 + LRK53_RS05755 0.64 +0.2
1,339,573 + LRK53_RS05755 0.64 -0.6
1,339,573 + LRK53_RS05755 0.64 -0.8
1,339,573 + LRK53_RS05755 0.64 -2.3
1,339,574 - LRK53_RS05755 0.64 -2.4
1,339,574 - LRK53_RS05755 0.64 -1.6
1,339,574 - LRK53_RS05755 0.64 +0.5
1,339,574 - LRK53_RS05755 0.64 -0.4
1,339,574 - LRK53_RS05755 0.64 -1.7
1,339,574 - LRK53_RS05755 0.64 +0.3
1,339,574 - LRK53_RS05755 0.64 -1.1
1,339,829 + LRK53_RS05755 0.79 -0.5
1,339,829 + LRK53_RS05755 0.79 +0.2
1,339,829 + LRK53_RS05755 0.79 -0.9
1,339,829 + LRK53_RS05755 0.79 -1.3
1,339,829 + LRK53_RS05755 0.79 -1.4
1,339,829 + LRK53_RS05755 0.79 -0.9
1,339,829 + LRK53_RS05755 0.79 -1.1
1,339,829 + LRK53_RS05755 0.79 -0.9
1,339,829 + LRK53_RS05755 0.79 +0.8
1,339,830 - LRK53_RS05755 0.79 +1.5
1,339,830 - LRK53_RS05755 0.79 -0.5
1,339,830 - LRK53_RS05755 0.79 +0.7
1,339,830 - LRK53_RS05755 0.79 -1.4
1,339,830 - LRK53_RS05755 0.79 +0.7
1,339,830 - LRK53_RS05755 0.79 +0.9
1,339,830 - LRK53_RS05755 0.79 +0.6
1,339,830 - LRK53_RS05755 0.79 -0.4
1,340,416 + LRK53_RS05760 0.48 -0.2

Or see this region's nucleotide sequence