Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05040 and LRK53_RS05045 are separated by 71 nucleotides LRK53_RS05045 and LRK53_RS05050 are separated by 88 nucleotides LRK53_RS05050 and LRK53_RS05055 are separated by 126 nucleotides
LRK53_RS05040: LRK53_RS05040 - outer membrane protein assembly factor BamD, at 1,189,157 to 1,190,023
_RS05040
LRK53_RS05045: LRK53_RS05045 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 1,190,095 to 1,191,069
_RS05045
LRK53_RS05050: LRK53_RS05050 - peptidoglycan editing factor PgeF, at 1,191,158 to 1,191,907
_RS05050
LRK53_RS05055: LRK53_RS05055 - ATP-dependent chaperone ClpB, at 1,192,034 to 1,194,631
_RS05055
Position (kb)
1190
1191
1192 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1190.024 kb on - strand at 1190.123 kb on + strand at 1190.123 kb on + strand at 1190.551 kb on + strand, within LRK53_RS05045 at 1190.552 kb on - strand, within LRK53_RS05045 at 1190.552 kb on - strand, within LRK53_RS05045 at 1191.166 kb on + strand at 1191.166 kb on + strand at 1191.167 kb on - strand at 1191.167 kb on - strand at 1191.839 kb on + strand at 1191.839 kb on + strand at 1191.839 kb on + strand at 1191.839 kb on + strand at 1191.840 kb on - strand at 1191.840 kb on - strand at 1191.840 kb on - strand at 1191.845 kb on + strand at 1191.975 kb on + strand at 1191.975 kb on + strand at 1191.975 kb on + strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.030 kb on - strand at 1192.030 kb on - strand at 1192.030 kb on - strand at 1192.030 kb on - strand at 1192.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,190,024 - -1.2 1,190,123 + -0.8 1,190,123 + -1.7 1,190,551 + LRK53_RS05045 0.47 -0.8 1,190,552 - LRK53_RS05045 0.47 -1.2 1,190,552 - LRK53_RS05045 0.47 -1.1 1,191,166 + +1.9 1,191,166 + -1.6 1,191,167 - -0.1 1,191,167 - -0.8 1,191,839 + -1.4 1,191,839 + -0.8 1,191,839 + -2.1 1,191,839 + -1.8 1,191,840 - -0.6 1,191,840 - +1.3 1,191,840 - -1.2 1,191,845 + +1.3 1,191,975 + -1.4 1,191,975 + -0.6 1,191,975 + -0.5 1,191,976 - +0.8 1,191,976 - -0.7 1,191,976 - +0.6 1,191,976 - -0.9 1,191,976 - +0.2 1,191,976 - -1.2 1,191,976 - -1.1 1,191,976 - +0.6 1,191,976 - -1.5 1,192,029 + +0.3 1,192,029 + +1.4 1,192,029 + -0.7 1,192,029 + -0.0 1,192,029 + -3.0 1,192,029 + -0.6 1,192,029 + -0.5 1,192,029 + -1.0 1,192,029 + +0.1 1,192,029 + +0.3 1,192,029 + -0.5 1,192,029 + -2.2 1,192,029 + -0.6 1,192,029 + -0.9 1,192,029 + +0.3 1,192,029 + -1.0 1,192,029 + -0.2 1,192,030 - +2.1 1,192,030 - +0.6 1,192,030 - -0.4 1,192,030 - -1.0 1,192,030 - -1.2
Or see this region's nucleotide sequence