Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05045

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05040 and LRK53_RS05045 are separated by 71 nucleotidesLRK53_RS05045 and LRK53_RS05050 are separated by 88 nucleotidesLRK53_RS05050 and LRK53_RS05055 are separated by 126 nucleotides LRK53_RS05040: LRK53_RS05040 - outer membrane protein assembly factor BamD, at 1,189,157 to 1,190,023 _RS05040 LRK53_RS05045: LRK53_RS05045 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 1,190,095 to 1,191,069 _RS05045 LRK53_RS05050: LRK53_RS05050 - peptidoglycan editing factor PgeF, at 1,191,158 to 1,191,907 _RS05050 LRK53_RS05055: LRK53_RS05055 - ATP-dependent chaperone ClpB, at 1,192,034 to 1,194,631 _RS05055 Position (kb) 1190 1191 1192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1190.024 kb on - strandat 1190.123 kb on + strandat 1190.123 kb on + strandat 1190.551 kb on + strand, within LRK53_RS05045at 1190.552 kb on - strand, within LRK53_RS05045at 1190.552 kb on - strand, within LRK53_RS05045at 1191.166 kb on + strandat 1191.166 kb on + strandat 1191.167 kb on - strandat 1191.167 kb on - strandat 1191.839 kb on + strandat 1191.839 kb on + strandat 1191.839 kb on + strandat 1191.839 kb on + strandat 1191.840 kb on - strandat 1191.840 kb on - strandat 1191.840 kb on - strandat 1191.845 kb on + strandat 1191.975 kb on + strandat 1191.975 kb on + strandat 1191.975 kb on + strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1191.976 kb on - strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.029 kb on + strandat 1192.030 kb on - strandat 1192.030 kb on - strandat 1192.030 kb on - strandat 1192.030 kb on - strandat 1192.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,190,024 - -1.2
1,190,123 + -0.8
1,190,123 + -1.7
1,190,551 + LRK53_RS05045 0.47 -0.8
1,190,552 - LRK53_RS05045 0.47 -1.2
1,190,552 - LRK53_RS05045 0.47 -1.1
1,191,166 + +1.9
1,191,166 + -1.6
1,191,167 - -0.1
1,191,167 - -0.8
1,191,839 + -1.4
1,191,839 + -0.8
1,191,839 + -2.1
1,191,839 + -1.8
1,191,840 - -0.6
1,191,840 - +1.3
1,191,840 - -1.2
1,191,845 + +1.3
1,191,975 + -1.4
1,191,975 + -0.6
1,191,975 + -0.5
1,191,976 - +0.8
1,191,976 - -0.7
1,191,976 - +0.6
1,191,976 - -0.9
1,191,976 - +0.2
1,191,976 - -1.2
1,191,976 - -1.1
1,191,976 - +0.6
1,191,976 - -1.5
1,192,029 + +0.3
1,192,029 + +1.4
1,192,029 + -0.7
1,192,029 + -0.0
1,192,029 + -3.0
1,192,029 + -0.6
1,192,029 + -0.5
1,192,029 + -1.0
1,192,029 + +0.1
1,192,029 + +0.3
1,192,029 + -0.5
1,192,029 + -2.2
1,192,029 + -0.6
1,192,029 + -0.9
1,192,029 + +0.3
1,192,029 + -1.0
1,192,029 + -0.2
1,192,030 - +2.1
1,192,030 - +0.6
1,192,030 - -0.4
1,192,030 - -1.0
1,192,030 - -1.2

Or see this region's nucleotide sequence