Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03570

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03565 and LRK53_RS03570 are separated by 295 nucleotidesLRK53_RS03570 and LRK53_RS03575 are separated by 128 nucleotides LRK53_RS03565: LRK53_RS03565 - hypothetical protein, at 841,849 to 842,757 _RS03565 LRK53_RS03570: LRK53_RS03570 - acid phosphatase, at 843,053 to 843,952 _RS03570 LRK53_RS03575: LRK53_RS03575 - AI-2E family transporter, at 844,081 to 845,112 _RS03575 Position (kb) 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 842.096 kb on + strand, within LRK53_RS03565at 842.096 kb on + strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.405 kb on + strand, within LRK53_RS03565at 842.405 kb on + strand, within LRK53_RS03565at 842.405 kb on + strand, within LRK53_RS03565at 842.406 kb on - strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.574 kb on - strand, within LRK53_RS03565at 842.978 kb on + strandat 842.978 kb on + strandat 842.978 kb on + strandat 842.978 kb on + strandat 842.978 kb on + strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 843.065 kb on + strandat 843.065 kb on + strandat 843.066 kb on - strandat 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.245 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.459 kb on + strand, within LRK53_RS03570at 843.459 kb on + strand, within LRK53_RS03570at 843.460 kb on - strand, within LRK53_RS03570at 843.460 kb on - strand, within LRK53_RS03570at 843.460 kb on - strand, within LRK53_RS03570at 843.460 kb on - strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.601 kb on - strand, within LRK53_RS03570at 843.747 kb on + strand, within LRK53_RS03570at 843.748 kb on - strand, within LRK53_RS03570at 843.748 kb on - strand, within LRK53_RS03570at 843.759 kb on + strand, within LRK53_RS03570at 843.759 kb on + strand, within LRK53_RS03570at 843.759 kb on + strand, within LRK53_RS03570at 843.759 kb on + strand, within LRK53_RS03570at 843.759 kb on + strand, within LRK53_RS03570at 843.760 kb on - strand, within LRK53_RS03570at 843.760 kb on - strand, within LRK53_RS03570at 843.760 kb on - strand, within LRK53_RS03570at 843.760 kb on - strand, within LRK53_RS03570at 843.760 kb on - strand, within LRK53_RS03570at 843.760 kb on - strand, within LRK53_RS03570at 843.972 kb on - strandat 843.999 kb on + strandat 843.999 kb on + strandat 844.000 kb on - strandat 844.000 kb on - strandat 844.129 kb on + strandat 844.138 kb on + strandat 844.138 kb on + strandat 844.138 kb on + strandat 844.138 kb on + strandat 844.138 kb on + strandat 844.138 kb on + strandat 844.138 kb on + strandat 844.139 kb on - strandat 844.139 kb on - strandat 844.139 kb on - strandat 844.139 kb on - strandat 844.139 kb on - strandat 844.139 kb on - strandat 844.139 kb on - strandat 844.139 kb on - strandat 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.945 kb on + strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575at 844.946 kb on - strand, within LRK53_RS03575

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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842,096 + LRK53_RS03565 0.27 -1.6
842,096 + LRK53_RS03565 0.27 -0.0
842,097 - LRK53_RS03565 0.27 -0.1
842,097 - LRK53_RS03565 0.27 +1.4
842,097 - LRK53_RS03565 0.27 +0.3
842,097 - LRK53_RS03565 0.27 -1.1
842,097 - LRK53_RS03565 0.27 -0.5
842,097 - LRK53_RS03565 0.27 -1.9
842,138 + LRK53_RS03565 0.32 -2.5
842,138 + LRK53_RS03565 0.32 +0.2
842,138 + LRK53_RS03565 0.32 -0.0
842,138 + LRK53_RS03565 0.32 -1.7
842,138 + LRK53_RS03565 0.32 +3.2
842,138 + LRK53_RS03565 0.32 -0.6
842,138 + LRK53_RS03565 0.32 -0.9
842,138 + LRK53_RS03565 0.32 -2.2
842,138 + LRK53_RS03565 0.32 -1.7
842,139 - LRK53_RS03565 0.32 +0.5
842,139 - LRK53_RS03565 0.32 +0.0
842,139 - LRK53_RS03565 0.32 -0.3
842,139 - LRK53_RS03565 0.32 -0.5
842,139 - LRK53_RS03565 0.32 -0.3
842,139 - LRK53_RS03565 0.32 -2.3
842,139 - LRK53_RS03565 0.32 -2.5
842,139 - LRK53_RS03565 0.32 -0.6
842,405 + LRK53_RS03565 0.61 -0.7
842,405 + LRK53_RS03565 0.61 -0.3
842,405 + LRK53_RS03565 0.61 -0.1
842,406 - LRK53_RS03565 0.61 +0.1
842,447 + LRK53_RS03565 0.66 -0.5
842,447 + LRK53_RS03565 0.66 -1.7
842,447 + LRK53_RS03565 0.66 -1.9
842,447 + LRK53_RS03565 0.66 -0.8
842,447 + LRK53_RS03565 0.66 +0.6
842,447 + LRK53_RS03565 0.66 +1.1
842,448 - LRK53_RS03565 0.66 +0.8
842,448 - LRK53_RS03565 0.66 -0.7
842,448 - LRK53_RS03565 0.66 -1.1
842,448 - LRK53_RS03565 0.66 +0.1
842,448 - LRK53_RS03565 0.66 +0.3
842,448 - LRK53_RS03565 0.66 -1.1
842,573 + LRK53_RS03565 0.80 -1.1
842,573 + LRK53_RS03565 0.80 +0.5
842,573 + LRK53_RS03565 0.80 +0.0
842,573 + LRK53_RS03565 0.80 -1.0
842,573 + LRK53_RS03565 0.80 -1.1
842,573 + LRK53_RS03565 0.80 -1.0
842,573 + LRK53_RS03565 0.80 +0.3
842,573 + LRK53_RS03565 0.80 +0.8
842,574 - LRK53_RS03565 0.80 -1.9
842,978 + -1.7
842,978 + -1.2
842,978 + -0.3
842,978 + +0.4
842,978 + -0.2
842,979 - -0.7
842,979 - +0.7
842,979 - -0.9
842,979 - +0.0
842,979 - -2.1
842,979 - -2.1
842,979 - +0.5
842,979 - -1.9
842,979 - -1.2
842,979 - -0.1
842,979 - -2.1
842,979 - +1.1
842,979 - -0.2
842,979 - -0.2
843,065 + -0.1
843,065 + -0.1
843,066 - +0.2
843,147 + LRK53_RS03570 0.10 -1.1
843,147 + LRK53_RS03570 0.10 -1.4
843,147 + LRK53_RS03570 0.10 -1.5
843,147 + LRK53_RS03570 0.10 -0.1
843,147 + LRK53_RS03570 0.10 -0.7
843,147 + LRK53_RS03570 0.10 -1.1
843,147 + LRK53_RS03570 0.10 -1.0
843,147 + LRK53_RS03570 0.10 -1.6
843,147 + LRK53_RS03570 0.10 +0.4
843,147 + LRK53_RS03570 0.10 -1.1
843,147 + LRK53_RS03570 0.10 -1.7
843,148 - LRK53_RS03570 0.11 -0.1
843,148 - LRK53_RS03570 0.11 -0.7
843,148 - LRK53_RS03570 0.11 -0.5
843,148 - LRK53_RS03570 0.11 -1.0
843,148 - LRK53_RS03570 0.11 -0.3
843,148 - LRK53_RS03570 0.11 -0.6
843,148 - LRK53_RS03570 0.11 -0.8
843,193 + LRK53_RS03570 0.16 -0.1
843,193 + LRK53_RS03570 0.16 -1.3
843,193 + LRK53_RS03570 0.16 -0.5
843,193 + LRK53_RS03570 0.16 +1.1
843,193 + LRK53_RS03570 0.16 +0.4
843,193 + LRK53_RS03570 0.16 -1.3
843,193 + LRK53_RS03570 0.16 +0.3
843,193 + LRK53_RS03570 0.16 +0.9
843,193 + LRK53_RS03570 0.16 -0.8
843,193 + LRK53_RS03570 0.16 -1.7
843,193 + LRK53_RS03570 0.16 -0.9
843,193 + LRK53_RS03570 0.16 +0.6
843,194 - LRK53_RS03570 0.16 -0.7
843,194 - LRK53_RS03570 0.16 -3.1
843,194 - LRK53_RS03570 0.16 -0.1
843,194 - LRK53_RS03570 0.16 -0.2
843,195 + LRK53_RS03570 0.16 +1.9
843,195 + LRK53_RS03570 0.16 -1.2
843,195 + LRK53_RS03570 0.16 -0.7
843,195 + LRK53_RS03570 0.16 -1.1
843,195 + LRK53_RS03570 0.16 -1.6
843,195 + LRK53_RS03570 0.16 +0.7
843,195 + LRK53_RS03570 0.16 -3.1
843,195 + LRK53_RS03570 0.16 -0.1
843,195 + LRK53_RS03570 0.16 +1.1
843,195 + LRK53_RS03570 0.16 -0.1
843,195 + LRK53_RS03570 0.16 -1.7
843,195 + LRK53_RS03570 0.16 -0.4
843,195 + LRK53_RS03570 0.16 -0.9
843,195 + LRK53_RS03570 0.16 -1.9
843,195 + LRK53_RS03570 0.16 -0.5
843,195 + LRK53_RS03570 0.16 -1.4
843,195 + LRK53_RS03570 0.16 +0.3
843,195 + LRK53_RS03570 0.16 -0.1
843,195 + LRK53_RS03570 0.16 -0.2
843,195 + LRK53_RS03570 0.16 -1.7
843,195 + LRK53_RS03570 0.16 -1.1
843,196 - LRK53_RS03570 0.16 -0.2
843,196 - LRK53_RS03570 0.16 -0.8
843,196 - LRK53_RS03570 0.16 -1.9
843,196 - LRK53_RS03570 0.16 +0.4
843,196 - LRK53_RS03570 0.16 +0.7
843,196 - LRK53_RS03570 0.16 -0.2
843,196 - LRK53_RS03570 0.16 -0.4
843,196 - LRK53_RS03570 0.16 -0.4
843,196 - LRK53_RS03570 0.16 +0.6
843,245 + LRK53_RS03570 0.21 -3.0
843,288 + LRK53_RS03570 0.26 -1.2
843,288 + LRK53_RS03570 0.26 -0.5
843,288 + LRK53_RS03570 0.26 +0.2
843,288 + LRK53_RS03570 0.26 -0.7
843,289 - LRK53_RS03570 0.26 -1.5
843,289 - LRK53_RS03570 0.26 -1.2
843,289 - LRK53_RS03570 0.26 +1.5
843,289 - LRK53_RS03570 0.26 +0.2
843,459 + LRK53_RS03570 0.45 -0.4
843,459 + LRK53_RS03570 0.45 -1.9
843,460 - LRK53_RS03570 0.45 -0.4
843,460 - LRK53_RS03570 0.45 -1.6
843,460 - LRK53_RS03570 0.45 -0.3
843,460 - LRK53_RS03570 0.45 -2.1
843,567 + LRK53_RS03570 0.57 -0.4
843,567 + LRK53_RS03570 0.57 -0.2
843,567 + LRK53_RS03570 0.57 -1.6
843,567 + LRK53_RS03570 0.57 -0.9
843,567 + LRK53_RS03570 0.57 -0.9
843,567 + LRK53_RS03570 0.57 +0.9
843,568 - LRK53_RS03570 0.57 -0.5
843,568 - LRK53_RS03570 0.57 -0.5
843,568 - LRK53_RS03570 0.57 -0.4
843,568 - LRK53_RS03570 0.57 -0.4
843,568 - LRK53_RS03570 0.57 -1.9
843,568 - LRK53_RS03570 0.57 -1.2
843,601 - LRK53_RS03570 0.61 +0.5
843,747 + LRK53_RS03570 0.77 -0.1
843,748 - LRK53_RS03570 0.77 -2.1
843,748 - LRK53_RS03570 0.77 +0.5
843,759 + LRK53_RS03570 0.78 -0.9
843,759 + LRK53_RS03570 0.78 +0.7
843,759 + LRK53_RS03570 0.78 -0.9
843,759 + LRK53_RS03570 0.78 +0.8
843,759 + LRK53_RS03570 0.78 -0.8
843,760 - LRK53_RS03570 0.79 +0.2
843,760 - LRK53_RS03570 0.79 -1.0
843,760 - LRK53_RS03570 0.79 -1.0
843,760 - LRK53_RS03570 0.79 -0.7
843,760 - LRK53_RS03570 0.79 +1.2
843,760 - LRK53_RS03570 0.79 -1.7
843,972 - -0.8
843,999 + -0.3
843,999 + -0.5
844,000 - -0.6
844,000 - +0.5
844,129 + -1.8
844,138 + +0.0
844,138 + -0.9
844,138 + -0.1
844,138 + -1.3
844,138 + -0.7
844,138 + +0.1
844,138 + -0.9
844,139 - -0.4
844,139 - -0.6
844,139 - -0.8
844,139 - -0.0
844,139 - -1.2
844,139 - -1.1
844,139 - +0.4
844,139 - -0.6
844,945 + LRK53_RS03575 0.84 -1.2
844,945 + LRK53_RS03575 0.84 -1.0
844,945 + LRK53_RS03575 0.84 -0.8
844,945 + LRK53_RS03575 0.84 -2.0
844,945 + LRK53_RS03575 0.84 -0.2
844,945 + LRK53_RS03575 0.84 -0.3
844,945 + LRK53_RS03575 0.84 +0.1
844,945 + LRK53_RS03575 0.84 -0.0
844,945 + LRK53_RS03575 0.84 +0.5
844,945 + LRK53_RS03575 0.84 -0.5
844,946 - LRK53_RS03575 0.84 -0.4
844,946 - LRK53_RS03575 0.84 -0.8
844,946 - LRK53_RS03575 0.84 -0.7
844,946 - LRK53_RS03575 0.84 -1.4
844,946 - LRK53_RS03575 0.84 +0.4
844,946 - LRK53_RS03575 0.84 -0.5
844,946 - LRK53_RS03575 0.84 -0.1
844,946 - LRK53_RS03575 0.84 +0.5
844,946 - LRK53_RS03575 0.84 +1.4
844,946 - LRK53_RS03575 0.84 +0.3
844,946 - LRK53_RS03575 0.84 -1.2
844,946 - LRK53_RS03575 0.84 -1.1

Or see this region's nucleotide sequence