Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03275 and LRK53_RS03280 are separated by 12 nucleotides LRK53_RS03280 and LRK53_RS03285 are separated by 244 nucleotides
LRK53_RS03275: LRK53_RS03275 - amino acid permease, at 772,021 to 773,532
_RS03275
LRK53_RS03280: LRK53_RS03280 - GGDEF domain-containing protein, at 773,545 to 774,627
_RS03280
LRK53_RS03285: LRK53_RS03285 - M61 family metallopeptidase, at 774,872 to 776,770
_RS03285
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.708 kb on + strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.709 kb on - strand, within LRK53_RS03275 at 772.837 kb on + strand, within LRK53_RS03275 at 772.933 kb on + strand, within LRK53_RS03275 at 772.933 kb on + strand, within LRK53_RS03275 at 772.933 kb on + strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.934 kb on - strand, within LRK53_RS03275 at 772.972 kb on + strand, within LRK53_RS03275 at 772.973 kb on - strand, within LRK53_RS03275 at 772.973 kb on - strand, within LRK53_RS03275 at 772.973 kb on - strand, within LRK53_RS03275 at 773.416 kb on + strand at 773.437 kb on + strand at 773.438 kb on - strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.479 kb on + strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.480 kb on - strand at 773.489 kb on - strand at 773.489 kb on - strand at 773.885 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.131 kb on + strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.132 kb on - strand, within LRK53_RS03280 at 774.140 kb on + strand, within LRK53_RS03280 at 774.140 kb on + strand, within LRK53_RS03280 at 774.140 kb on + strand, within LRK53_RS03280 at 774.141 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.149 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.501 kb on - strand, within LRK53_RS03280 at 774.560 kb on + strand at 774.560 kb on + strand at 774.560 kb on + strand at 774.569 kb on + strand at 774.569 kb on + strand at 774.570 kb on - strand at 774.570 kb on - strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.623 kb on + strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.624 kb on - strand at 774.726 kb on + strand at 774.772 kb on - strand at 774.971 kb on + strand at 774.972 kb on - strand at 775.076 kb on + strand, within LRK53_RS03285 at 775.077 kb on - strand, within LRK53_RS03285 at 775.193 kb on + strand, within LRK53_RS03285 at 775.193 kb on + strand, within LRK53_RS03285 at 775.194 kb on - strand, within LRK53_RS03285 at 775.194 kb on - strand, within LRK53_RS03285 at 775.334 kb on + strand, within LRK53_RS03285 at 775.334 kb on + strand, within LRK53_RS03285 at 775.335 kb on - strand, within LRK53_RS03285 at 775.346 kb on + strand, within LRK53_RS03285 at 775.346 kb on + strand, within LRK53_RS03285 at 775.466 kb on + strand, within LRK53_RS03285 at 775.466 kb on + strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.467 kb on - strand, within LRK53_RS03285 at 775.493 kb on + strand, within LRK53_RS03285 at 775.493 kb on + strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.494 kb on - strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.505 kb on + strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.506 kb on - strand, within LRK53_RS03285 at 775.550 kb on + strand, within LRK53_RS03285 at 775.550 kb on + strand, within LRK53_RS03285 at 775.550 kb on + strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.551 kb on - strand, within LRK53_RS03285 at 775.580 kb on + strand, within LRK53_RS03285 at 775.580 kb on + strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285 at 775.581 kb on - strand, within LRK53_RS03285
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 772,708 + LRK53_RS03275 0.45 +1.0 772,708 + LRK53_RS03275 0.45 +2.5 772,708 + LRK53_RS03275 0.45 -1.2 772,708 + LRK53_RS03275 0.45 -2.4 772,708 + LRK53_RS03275 0.45 -1.8 772,708 + LRK53_RS03275 0.45 -0.7 772,709 - LRK53_RS03275 0.46 -1.0 772,709 - LRK53_RS03275 0.46 -1.2 772,709 - LRK53_RS03275 0.46 -0.8 772,709 - LRK53_RS03275 0.46 -2.4 772,837 + LRK53_RS03275 0.54 +0.3 772,933 + LRK53_RS03275 0.60 -2.3 772,933 + LRK53_RS03275 0.60 -0.5 772,933 + LRK53_RS03275 0.60 -1.0 772,934 - LRK53_RS03275 0.60 -0.2 772,934 - LRK53_RS03275 0.60 -0.6 772,934 - LRK53_RS03275 0.60 -0.5 772,934 - LRK53_RS03275 0.60 -0.4 772,972 + LRK53_RS03275 0.63 -2.5 772,973 - LRK53_RS03275 0.63 -0.1 772,973 - LRK53_RS03275 0.63 -3.0 772,973 - LRK53_RS03275 0.63 +0.2 773,416 + -0.6 773,437 + -1.7 773,438 - -1.6 773,479 + -0.8 773,479 + +1.3 773,479 + -1.0 773,479 + -0.5 773,479 + -0.4 773,479 + -0.6 773,479 + -0.8 773,480 - -1.6 773,480 - +1.3 773,480 - -0.1 773,480 - +0.7 773,480 - -1.4 773,480 - -0.6 773,480 - -0.7 773,489 - -0.6 773,489 - -1.0 773,885 + LRK53_RS03280 0.31 -2.5 774,131 + LRK53_RS03280 0.54 +2.0 774,131 + LRK53_RS03280 0.54 -1.2 774,131 + LRK53_RS03280 0.54 -1.4 774,131 + LRK53_RS03280 0.54 -0.8 774,131 + LRK53_RS03280 0.54 -1.6 774,131 + LRK53_RS03280 0.54 +0.3 774,131 + LRK53_RS03280 0.54 -1.3 774,131 + LRK53_RS03280 0.54 -1.3 774,131 + LRK53_RS03280 0.54 -0.8 774,131 + LRK53_RS03280 0.54 +0.5 774,131 + LRK53_RS03280 0.54 -0.8 774,131 + LRK53_RS03280 0.54 -1.9 774,132 - LRK53_RS03280 0.54 +0.2 774,132 - LRK53_RS03280 0.54 -2.0 774,132 - LRK53_RS03280 0.54 +0.5 774,132 - LRK53_RS03280 0.54 -2.1 774,132 - LRK53_RS03280 0.54 -0.0 774,132 - LRK53_RS03280 0.54 -0.6 774,132 - LRK53_RS03280 0.54 +0.7 774,132 - LRK53_RS03280 0.54 -1.7 774,132 - LRK53_RS03280 0.54 -1.8 774,132 - LRK53_RS03280 0.54 -0.8 774,132 - LRK53_RS03280 0.54 -0.8 774,132 - LRK53_RS03280 0.54 -1.1 774,140 + LRK53_RS03280 0.55 -0.6 774,140 + LRK53_RS03280 0.55 -0.6 774,140 + LRK53_RS03280 0.55 -1.9 774,141 - LRK53_RS03280 0.55 -0.2 774,149 - LRK53_RS03280 0.56 -1.5 774,149 - LRK53_RS03280 0.56 -0.2 774,149 - LRK53_RS03280 0.56 -1.4 774,149 - LRK53_RS03280 0.56 -0.5 774,501 - LRK53_RS03280 0.88 +1.1 774,501 - LRK53_RS03280 0.88 -2.0 774,501 - LRK53_RS03280 0.88 -0.0 774,501 - LRK53_RS03280 0.88 -0.3 774,501 - LRK53_RS03280 0.88 +1.0 774,501 - LRK53_RS03280 0.88 -0.1 774,560 + -0.7 774,560 + -0.3 774,560 + +0.2 774,569 + +0.4 774,569 + -1.2 774,570 - -1.0 774,570 - -0.2 774,623 + +1.7 774,623 + +0.5 774,623 + -0.7 774,623 + +0.1 774,623 + -0.6 774,623 + +0.5 774,623 + +1.8 774,623 + +1.7 774,623 + -0.4 774,623 + -1.0 774,623 + -1.2 774,623 + -0.1 774,623 + +1.0 774,624 - -0.6 774,624 - -1.3 774,624 - -0.2 774,624 - +0.6 774,624 - -0.0 774,624 - +0.1 774,624 - +0.2 774,624 - -1.0 774,624 - -0.6 774,624 - -0.4 774,624 - -0.3 774,624 - +0.7 774,726 + +0.5 774,772 - -2.0 774,971 + -1.4 774,972 - +0.1 775,076 + LRK53_RS03285 0.11 -1.2 775,077 - LRK53_RS03285 0.11 +1.5 775,193 + LRK53_RS03285 0.17 +0.8 775,193 + LRK53_RS03285 0.17 +0.4 775,194 - LRK53_RS03285 0.17 -0.6 775,194 - LRK53_RS03285 0.17 +0.2 775,334 + LRK53_RS03285 0.24 -0.1 775,334 + LRK53_RS03285 0.24 +0.5 775,335 - LRK53_RS03285 0.24 -1.3 775,346 + LRK53_RS03285 0.25 +0.4 775,346 + LRK53_RS03285 0.25 -0.6 775,466 + LRK53_RS03285 0.31 -0.5 775,466 + LRK53_RS03285 0.31 -0.8 775,467 - LRK53_RS03285 0.31 -0.1 775,467 - LRK53_RS03285 0.31 -0.8 775,467 - LRK53_RS03285 0.31 -0.7 775,467 - LRK53_RS03285 0.31 -0.3 775,467 - LRK53_RS03285 0.31 +0.7 775,467 - LRK53_RS03285 0.31 +1.0 775,467 - LRK53_RS03285 0.31 -1.7 775,467 - LRK53_RS03285 0.31 -0.8 775,467 - LRK53_RS03285 0.31 -0.5 775,493 + LRK53_RS03285 0.33 -1.0 775,493 + LRK53_RS03285 0.33 +0.2 775,494 - LRK53_RS03285 0.33 -1.9 775,494 - LRK53_RS03285 0.33 +1.1 775,494 - LRK53_RS03285 0.33 +1.4 775,494 - LRK53_RS03285 0.33 -0.9 775,505 + LRK53_RS03285 0.33 -0.8 775,505 + LRK53_RS03285 0.33 -2.2 775,505 + LRK53_RS03285 0.33 -0.8 775,505 + LRK53_RS03285 0.33 -1.6 775,505 + LRK53_RS03285 0.33 +0.1 775,505 + LRK53_RS03285 0.33 -1.3 775,506 - LRK53_RS03285 0.33 -0.3 775,506 - LRK53_RS03285 0.33 -0.7 775,506 - LRK53_RS03285 0.33 +1.5 775,506 - LRK53_RS03285 0.33 -0.9 775,506 - LRK53_RS03285 0.33 -0.2 775,506 - LRK53_RS03285 0.33 -3.3 775,506 - LRK53_RS03285 0.33 -0.6 775,550 + LRK53_RS03285 0.36 +0.5 775,550 + LRK53_RS03285 0.36 -0.6 775,550 + LRK53_RS03285 0.36 +0.5 775,551 - LRK53_RS03285 0.36 -2.3 775,551 - LRK53_RS03285 0.36 -0.6 775,551 - LRK53_RS03285 0.36 -1.0 775,551 - LRK53_RS03285 0.36 -0.7 775,551 - LRK53_RS03285 0.36 -1.4 775,551 - LRK53_RS03285 0.36 +0.3 775,580 + LRK53_RS03285 0.37 +0.1 775,580 + LRK53_RS03285 0.37 -0.4 775,581 - LRK53_RS03285 0.37 -1.6 775,581 - LRK53_RS03285 0.37 -1.5 775,581 - LRK53_RS03285 0.37 -0.7 775,581 - LRK53_RS03285 0.37 -1.5 775,581 - LRK53_RS03285 0.37 -0.1 775,581 - LRK53_RS03285 0.37 -0.9
Or see this region's nucleotide sequence