Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01595 and LRK53_RS01600 are separated by 137 nucleotides LRK53_RS01600 and LRK53_RS01605 are separated by 120 nucleotides
LRK53_RS01595: LRK53_RS01595 - DUF3426 domain-containing protein, at 378,576 to 379,406
_RS01595
LRK53_RS01600: LRK53_RS01600 - 50S ribosomal protein L11 methyltransferase, at 379,544 to 380,461
_RS01600
LRK53_RS01605: LRK53_RS01605 - acetyl-CoA carboxylase biotin carboxylase subunit, at 380,582 to 381,949
_RS01605
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 378.559 kb on - strand at 378.559 kb on - strand at 378.559 kb on - strand at 378.559 kb on - strand at 378.559 kb on - strand at 378.563 kb on - strand at 378.577 kb on + strand at 378.578 kb on - strand at 378.578 kb on - strand at 378.695 kb on - strand, within LRK53_RS01595 at 378.695 kb on - strand, within LRK53_RS01595 at 378.695 kb on - strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.229 kb on - strand, within LRK53_RS01595 at 379.431 kb on - strand at 379.431 kb on - strand at 379.431 kb on - strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.470 kb on - strand at 379.470 kb on - strand at 379.470 kb on - strand at 379.470 kb on - strand at 379.510 kb on - strand at 379.620 kb on + strand at 379.620 kb on + strand at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.933 kb on - strand, within LRK53_RS01600 at 379.933 kb on - strand, within LRK53_RS01600 at 380.039 kb on + strand, within LRK53_RS01600 at 380.039 kb on + strand, within LRK53_RS01600 at 380.039 kb on + strand, within LRK53_RS01600 at 380.039 kb on + strand, within LRK53_RS01600 at 380.040 kb on - strand, within LRK53_RS01600 at 380.040 kb on - strand, within LRK53_RS01600 at 380.040 kb on - strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.366 kb on + strand, within LRK53_RS01600 at 380.573 kb on + strand at 380.573 kb on + strand at 380.573 kb on + strand at 380.573 kb on + strand at 380.573 kb on + strand at 380.573 kb on + strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.574 kb on - strand at 380.602 kb on + strand at 380.602 kb on + strand at 380.602 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 378,559 - -1.2 378,559 - +0.4 378,559 - -1.6 378,559 - +0.3 378,559 - -0.7 378,563 - -0.3 378,577 + -0.5 378,578 - -0.8 378,578 - -1.5 378,695 - LRK53_RS01595 0.14 -0.6 378,695 - LRK53_RS01595 0.14 -0.2 378,695 - LRK53_RS01595 0.14 -1.5 379,054 + LRK53_RS01595 0.58 -0.1 379,054 + LRK53_RS01595 0.58 -1.5 379,054 + LRK53_RS01595 0.58 +0.5 379,054 + LRK53_RS01595 0.58 -1.0 379,054 + LRK53_RS01595 0.58 -0.8 379,054 + LRK53_RS01595 0.58 -0.7 379,054 + LRK53_RS01595 0.58 -0.2 379,054 + LRK53_RS01595 0.58 -0.8 379,054 + LRK53_RS01595 0.58 -1.1 379,055 - LRK53_RS01595 0.58 -0.2 379,055 - LRK53_RS01595 0.58 -0.6 379,055 - LRK53_RS01595 0.58 +1.4 379,055 - LRK53_RS01595 0.58 -0.1 379,055 - LRK53_RS01595 0.58 -1.2 379,055 - LRK53_RS01595 0.58 -0.9 379,055 - LRK53_RS01595 0.58 -1.1 379,229 - LRK53_RS01595 0.79 -2.4 379,431 - -0.2 379,431 - +2.5 379,431 - -0.5 379,432 + -1.1 379,432 + +1.0 379,432 + -1.2 379,432 + +2.3 379,432 + -0.9 379,432 + -0.7 379,432 + -0.1 379,432 + +0.1 379,432 + -0.9 379,432 + -0.2 379,432 + +0.1 379,432 + +0.5 379,432 + -1.1 379,432 + -0.9 379,432 + -1.3 379,432 + -1.2 379,432 + +0.2 379,432 + -0.5 379,432 + -0.3 379,432 + -2.1 379,432 + +0.5 379,432 + -0.8 379,432 + -2.3 379,432 + -1.2 379,432 + +0.8 379,432 + +0.8 379,432 + -1.7 379,432 + -1.1 379,432 + -1.2 379,432 + -0.8 379,432 + -1.4 379,432 + -0.8 379,432 + -2.1 379,432 + +1.7 379,432 + -0.8 379,432 + -0.5 379,432 + -1.3 379,432 + -1.3 379,432 + -0.6 379,432 + -0.9 379,432 + +0.2 379,432 + -1.2 379,432 + -0.3 379,432 + +0.2 379,432 + -1.2 379,432 + -0.9 379,432 + -1.0 379,432 + -1.2 379,432 + -1.6 379,432 + -1.6 379,432 + -0.9 379,432 + -0.9 379,432 + -0.1 379,432 + +0.8 379,432 + -0.6 379,432 + +0.4 379,432 + -0.0 379,432 + -0.6 379,432 + -0.9 379,432 + -0.9 379,432 + -0.5 379,432 + -0.6 379,432 + -1.2 379,432 + +0.8 379,432 + -0.1 379,433 - -0.3 379,433 - -0.8 379,433 - -0.7 379,433 - -0.9 379,433 - -1.2 379,433 - -0.6 379,433 - +0.5 379,433 - -2.2 379,433 - +0.2 379,433 - -0.5 379,433 - -0.5 379,433 - -1.4 379,433 - -1.5 379,433 - -0.3 379,433 - -0.7 379,433 - -0.6 379,433 - +0.1 379,433 - +0.2 379,433 - -0.1 379,433 - -1.2 379,433 - -1.2 379,433 - +0.2 379,433 - -0.1 379,433 - +0.2 379,433 - -1.7 379,433 - -0.5 379,433 - -1.1 379,433 - -0.3 379,433 - -0.4 379,433 - -2.6 379,433 - +0.2 379,433 - +1.3 379,433 - +0.2 379,433 - -0.4 379,433 - -1.8 379,433 - +0.2 379,433 - +0.7 379,433 - -2.0 379,433 - +1.7 379,433 - -1.2 379,433 - -1.5 379,433 - +0.1 379,433 - +0.0 379,433 - -1.4 379,433 - -0.4 379,433 - -1.8 379,433 - -0.5 379,433 - -0.3 379,433 - -1.6 379,433 - +0.5 379,433 - -1.3 379,433 - +0.1 379,433 - -1.0 379,433 - -0.3 379,433 - +0.2 379,433 - -0.1 379,433 - -0.0 379,469 + +0.4 379,469 + -0.8 379,469 + -0.6 379,469 + -2.2 379,469 + -0.2 379,469 + -3.4 379,469 + -0.9 379,469 + -0.1 379,469 + -1.5 379,469 + -1.8 379,469 + -0.8 379,469 + -0.6 379,469 + -0.6 379,470 - -0.1 379,470 - -0.6 379,470 - -0.6 379,470 - +1.2 379,510 - -1.5 379,620 + -0.8 379,620 + -1.2 379,788 + LRK53_RS01600 0.27 -0.5 379,788 + LRK53_RS01600 0.27 -1.2 379,788 + LRK53_RS01600 0.27 -1.7 379,788 + LRK53_RS01600 0.27 -0.6 379,788 + LRK53_RS01600 0.27 -0.8 379,788 + LRK53_RS01600 0.27 +0.3 379,789 - LRK53_RS01600 0.27 -1.6 379,789 - LRK53_RS01600 0.27 -1.5 379,789 - LRK53_RS01600 0.27 -3.2 379,789 - LRK53_RS01600 0.27 -0.8 379,789 - LRK53_RS01600 0.27 -1.5 379,933 - LRK53_RS01600 0.42 +0.7 379,933 - LRK53_RS01600 0.42 +0.2 380,039 + LRK53_RS01600 0.54 -0.2 380,039 + LRK53_RS01600 0.54 -0.6 380,039 + LRK53_RS01600 0.54 +0.2 380,039 + LRK53_RS01600 0.54 +0.5 380,040 - LRK53_RS01600 0.54 +0.3 380,040 - LRK53_RS01600 0.54 -2.8 380,040 - LRK53_RS01600 0.54 +1.2 380,103 + LRK53_RS01600 0.61 -0.9 380,103 + LRK53_RS01600 0.61 -1.2 380,103 + LRK53_RS01600 0.61 -0.4 380,103 + LRK53_RS01600 0.61 -1.1 380,103 + LRK53_RS01600 0.61 +0.5 380,103 + LRK53_RS01600 0.61 -0.1 380,103 + LRK53_RS01600 0.61 -0.3 380,103 + LRK53_RS01600 0.61 -1.3 380,103 + LRK53_RS01600 0.61 +0.3 380,103 + LRK53_RS01600 0.61 -0.5 380,104 - LRK53_RS01600 0.61 +0.1 380,104 - LRK53_RS01600 0.61 -0.3 380,104 - LRK53_RS01600 0.61 -1.1 380,104 - LRK53_RS01600 0.61 -1.0 380,104 - LRK53_RS01600 0.61 -0.3 380,104 - LRK53_RS01600 0.61 -2.0 380,104 - LRK53_RS01600 0.61 -0.2 380,366 + LRK53_RS01600 0.90 +0.9 380,573 + -1.5 380,573 + -0.1 380,573 + -1.2 380,573 + -0.3 380,573 + -1.4 380,573 + +0.6 380,574 - -3.6 380,574 - -1.1 380,574 - -1.0 380,574 - -1.2 380,574 - -0.3 380,574 - +0.3 380,574 - -2.9 380,574 - -1.2 380,574 - -0.3 380,602 + -0.6 380,602 + -0.6 380,602 + +0.6
Or see this region's nucleotide sequence