Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01450

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01445 and LRK53_RS01450 are separated by 119 nucleotidesLRK53_RS01450 and LRK53_RS01455 are separated by 2 nucleotidesLRK53_RS01455 and LRK53_RS01460 are separated by 69 nucleotides LRK53_RS01445: LRK53_RS01445 - ABC transporter permease subunit, at 347,636 to 348,841 _RS01445 LRK53_RS01450: LRK53_RS01450 - EF-hand domain-containing protein, at 348,961 to 349,284 _RS01450 LRK53_RS01455: LRK53_RS01455 - GTP cyclohydrolase I FolE, at 349,287 to 349,892 _RS01455 LRK53_RS01460: LRK53_RS01460 - DNA recombination protein RmuC, at 349,962 to 351,491 _RS01460 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 348.029 kb on + strand, within LRK53_RS01445at 348.092 kb on + strand, within LRK53_RS01445at 348.228 kb on - strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.491 kb on + strand, within LRK53_RS01445at 348.491 kb on + strand, within LRK53_RS01445at 348.492 kb on - strand, within LRK53_RS01445at 348.492 kb on - strand, within LRK53_RS01445at 348.570 kb on - strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.668 kb on + strand, within LRK53_RS01445at 348.668 kb on + strand, within LRK53_RS01445at 348.668 kb on + strand, within LRK53_RS01445at 348.668 kb on + strand, within LRK53_RS01445at 348.669 kb on - strand, within LRK53_RS01445at 348.669 kb on - strand, within LRK53_RS01445at 348.809 kb on + strandat 348.810 kb on - strandat 348.810 kb on - strandat 348.857 kb on - strandat 348.998 kb on + strand, within LRK53_RS01450at 348.998 kb on + strand, within LRK53_RS01450at 348.999 kb on - strand, within LRK53_RS01450at 348.999 kb on - strand, within LRK53_RS01450at 349.052 kb on + strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.163 kb on + strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.215 kb on - strand, within LRK53_RS01450at 349.892 kb on + strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.919 kb on + strandat 349.920 kb on - strandat 349.991 kb on + strandat 349.992 kb on - strandat 349.992 kb on - strandat 349.992 kb on - strandat 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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348,029 + LRK53_RS01445 0.33 -1.2
348,092 + LRK53_RS01445 0.38 -0.6
348,228 - LRK53_RS01445 0.49 -1.2
348,263 + LRK53_RS01445 0.52 +0.5
348,263 + LRK53_RS01445 0.52 +0.2
348,263 + LRK53_RS01445 0.52 +0.2
348,263 + LRK53_RS01445 0.52 -0.8
348,263 + LRK53_RS01445 0.52 -1.6
348,264 - LRK53_RS01445 0.52 -0.3
348,264 - LRK53_RS01445 0.52 -1.4
348,264 - LRK53_RS01445 0.52 -0.6
348,264 - LRK53_RS01445 0.52 -2.4
348,264 - LRK53_RS01445 0.52 -1.5
348,491 + LRK53_RS01445 0.71 +1.1
348,491 + LRK53_RS01445 0.71 -0.9
348,492 - LRK53_RS01445 0.71 -0.3
348,492 - LRK53_RS01445 0.71 -1.2
348,570 - LRK53_RS01445 0.77 -1.3
348,587 + LRK53_RS01445 0.79 -0.5
348,587 + LRK53_RS01445 0.79 -0.2
348,587 + LRK53_RS01445 0.79 -1.3
348,587 + LRK53_RS01445 0.79 -0.2
348,588 - LRK53_RS01445 0.79 +0.6
348,588 - LRK53_RS01445 0.79 +0.2
348,588 - LRK53_RS01445 0.79 -0.0
348,588 - LRK53_RS01445 0.79 -0.0
348,588 - LRK53_RS01445 0.79 -0.6
348,588 - LRK53_RS01445 0.79 -0.9
348,588 - LRK53_RS01445 0.79 +1.7
348,588 - LRK53_RS01445 0.79 +1.1
348,668 + LRK53_RS01445 0.86 +1.5
348,668 + LRK53_RS01445 0.86 -2.3
348,668 + LRK53_RS01445 0.86 -1.5
348,668 + LRK53_RS01445 0.86 -0.6
348,669 - LRK53_RS01445 0.86 -0.6
348,669 - LRK53_RS01445 0.86 +1.0
348,809 + +0.5
348,810 - +1.2
348,810 - -0.9
348,857 - -0.5
348,998 + LRK53_RS01450 0.11 -0.7
348,998 + LRK53_RS01450 0.11 +0.7
348,999 - LRK53_RS01450 0.12 +1.5
348,999 - LRK53_RS01450 0.12 -1.8
349,052 + LRK53_RS01450 0.28 -1.2
349,053 - LRK53_RS01450 0.28 +0.1
349,053 - LRK53_RS01450 0.28 -2.8
349,053 - LRK53_RS01450 0.28 -0.3
349,053 - LRK53_RS01450 0.28 +0.2
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 +1.4
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 +1.0
349,154 + LRK53_RS01450 0.60 -0.1
349,154 + LRK53_RS01450 0.60 -0.3
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -0.3
349,154 + LRK53_RS01450 0.60 +0.2
349,154 + LRK53_RS01450 0.60 -1.2
349,154 + LRK53_RS01450 0.60 -0.3
349,154 + LRK53_RS01450 0.60 -1.3
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 +0.1
349,154 + LRK53_RS01450 0.60 +1.2
349,154 + LRK53_RS01450 0.60 +1.2
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 -0.6
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -2.0
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -2.3
349,154 + LRK53_RS01450 0.60 -0.0
349,155 - LRK53_RS01450 0.60 -0.8
349,155 - LRK53_RS01450 0.60 -0.8
349,155 - LRK53_RS01450 0.60 -0.5
349,155 - LRK53_RS01450 0.60 -0.6
349,155 - LRK53_RS01450 0.60 -1.0
349,155 - LRK53_RS01450 0.60 +2.1
349,155 - LRK53_RS01450 0.60 -0.9
349,155 - LRK53_RS01450 0.60 -2.3
349,155 - LRK53_RS01450 0.60 -2.6
349,155 - LRK53_RS01450 0.60 -1.7
349,155 - LRK53_RS01450 0.60 -0.6
349,155 - LRK53_RS01450 0.60 -0.6
349,155 - LRK53_RS01450 0.60 -1.6
349,155 - LRK53_RS01450 0.60 -1.8
349,155 - LRK53_RS01450 0.60 -1.9
349,155 - LRK53_RS01450 0.60 +1.2
349,155 - LRK53_RS01450 0.60 -1.1
349,155 - LRK53_RS01450 0.60 -1.4
349,155 - LRK53_RS01450 0.60 -0.5
349,155 - LRK53_RS01450 0.60 -1.3
349,155 - LRK53_RS01450 0.60 -0.6
349,155 - LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 -0.4
349,163 + LRK53_RS01450 0.62 -0.0
349,164 - LRK53_RS01450 0.63 -0.4
349,164 - LRK53_RS01450 0.63 -0.0
349,215 - LRK53_RS01450 0.78 +0.1
349,892 + +0.5
349,893 - -2.5
349,893 - -2.0
349,893 - -2.4
349,893 - -1.5
349,893 - -0.7
349,893 - -0.4
349,893 - +0.7
349,893 - -0.8
349,893 - +0.4
349,919 + +0.4
349,920 - -0.3
349,991 + -1.4
349,992 - -0.7
349,992 - -0.7
349,992 - -0.7
350,233 + LRK53_RS01460 0.18 -1.8
350,233 + LRK53_RS01460 0.18 -0.3
350,233 + LRK53_RS01460 0.18 -0.6
350,233 + LRK53_RS01460 0.18 -0.6
350,233 + LRK53_RS01460 0.18 -0.9
350,233 + LRK53_RS01460 0.18 -0.1
350,233 + LRK53_RS01460 0.18 -0.6
350,233 + LRK53_RS01460 0.18 +0.9
350,234 - LRK53_RS01460 0.18 +0.6
350,234 - LRK53_RS01460 0.18 +0.9
350,234 - LRK53_RS01460 0.18 -0.1
350,234 - LRK53_RS01460 0.18 +0.4
350,234 - LRK53_RS01460 0.18 -1.5
350,234 - LRK53_RS01460 0.18 +0.0

Or see this region's nucleotide sequence