Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00890 and LRK53_RS00895 are separated by 271 nucleotides LRK53_RS00895 and LRK53_RS00900 are separated by 200 nucleotides
LRK53_RS00890: LRK53_RS00890 - efflux RND transporter permease subunit, at 223,337 to 226,384
_RS00890
LRK53_RS00895: LRK53_RS00895 - hypothetical protein, at 226,656 to 227,690
_RS00895
LRK53_RS00900: LRK53_RS00900 - ATP-binding protein, at 227,891 to 229,312
_RS00900
Position (kb) 226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.842 kb on + strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.843 kb on - strand, within LRK53_RS00890 at 225.845 kb on + strand, within LRK53_RS00890 at 225.845 kb on + strand, within LRK53_RS00890 at 225.846 kb on - strand, within LRK53_RS00890 at 225.846 kb on - strand, within LRK53_RS00890 at 225.846 kb on - strand, within LRK53_RS00890 at 225.846 kb on - strand, within LRK53_RS00890 at 225.864 kb on - strand, within LRK53_RS00890 at 225.864 kb on - strand, within LRK53_RS00890 at 225.864 kb on - strand, within LRK53_RS00890 at 225.864 kb on - strand, within LRK53_RS00890 at 225.950 kb on + strand, within LRK53_RS00890 at 225.951 kb on - strand, within LRK53_RS00890 at 225.951 kb on - strand, within LRK53_RS00890 at 226.109 kb on + strand at 226.109 kb on + strand at 226.109 kb on + strand at 226.109 kb on + strand at 226.109 kb on + strand at 226.109 kb on + strand at 226.109 kb on + strand at 226.110 kb on - strand at 226.346 kb on + strand at 226.347 kb on - strand at 226.347 kb on - strand at 226.347 kb on - strand at 226.394 kb on - strand at 226.639 kb on + strand at 226.640 kb on - strand at 226.640 kb on - strand at 226.797 kb on + strand, within LRK53_RS00895 at 226.797 kb on + strand, within LRK53_RS00895 at 226.797 kb on + strand, within LRK53_RS00895 at 226.797 kb on + strand, within LRK53_RS00895 at 226.798 kb on - strand, within LRK53_RS00895 at 226.798 kb on - strand, within LRK53_RS00895 at 226.798 kb on - strand, within LRK53_RS00895 at 226.798 kb on - strand, within LRK53_RS00895 at 226.798 kb on - strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.055 kb on + strand, within LRK53_RS00895 at 227.056 kb on - strand, within LRK53_RS00895 at 227.056 kb on - strand, within LRK53_RS00895 at 227.056 kb on - strand, within LRK53_RS00895 at 227.056 kb on - strand, within LRK53_RS00895 at 227.056 kb on - strand, within LRK53_RS00895 at 227.202 kb on + strand, within LRK53_RS00895 at 227.203 kb on - strand, within LRK53_RS00895 at 227.341 kb on + strand, within LRK53_RS00895 at 227.342 kb on - strand, within LRK53_RS00895 at 227.457 kb on + strand, within LRK53_RS00895 at 227.457 kb on + strand, within LRK53_RS00895 at 227.457 kb on + strand, within LRK53_RS00895 at 227.457 kb on + strand, within LRK53_RS00895 at 227.457 kb on + strand, within LRK53_RS00895 at 227.458 kb on - strand, within LRK53_RS00895 at 227.458 kb on - strand, within LRK53_RS00895 at 227.458 kb on - strand, within LRK53_RS00895 at 227.458 kb on - strand, within LRK53_RS00895 at 227.458 kb on - strand, within LRK53_RS00895 at 227.517 kb on + strand, within LRK53_RS00895 at 227.517 kb on + strand, within LRK53_RS00895 at 227.517 kb on + strand, within LRK53_RS00895 at 227.518 kb on - strand, within LRK53_RS00895 at 227.590 kb on + strand at 227.590 kb on + strand at 227.590 kb on + strand at 227.590 kb on + strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.591 kb on - strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.592 kb on + strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.593 kb on - strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.696 kb on + strand at 227.697 kb on - strand at 227.713 kb on + strand at 227.714 kb on - strand at 227.714 kb on - strand at 227.714 kb on - strand at 227.714 kb on - strand at 227.714 kb on - strand at 227.714 kb on - strand at 227.714 kb on - strand at 227.714 kb on - strand at 227.759 kb on - strand at 227.759 kb on - strand at 227.869 kb on + strand at 227.869 kb on + strand at 227.869 kb on + strand at 227.869 kb on + strand at 227.869 kb on + strand at 227.869 kb on + strand at 227.869 kb on + strand at 227.892 kb on + strand at 227.893 kb on - strand at 227.927 kb on + strand at 227.927 kb on + strand at 228.173 kb on + strand, within LRK53_RS00900 at 228.173 kb on + strand, within LRK53_RS00900 at 228.174 kb on - strand, within LRK53_RS00900 at 228.232 kb on - strand, within LRK53_RS00900 at 228.232 kb on - strand, within LRK53_RS00900
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 225,842 + LRK53_RS00890 0.82 -0.8 225,842 + LRK53_RS00890 0.82 -1.3 225,842 + LRK53_RS00890 0.82 -0.8 225,842 + LRK53_RS00890 0.82 -3.0 225,842 + LRK53_RS00890 0.82 -0.8 225,842 + LRK53_RS00890 0.82 -1.7 225,842 + LRK53_RS00890 0.82 +1.8 225,842 + LRK53_RS00890 0.82 -0.6 225,842 + LRK53_RS00890 0.82 +0.0 225,842 + LRK53_RS00890 0.82 -1.5 225,842 + LRK53_RS00890 0.82 -0.7 225,842 + LRK53_RS00890 0.82 +1.6 225,842 + LRK53_RS00890 0.82 -0.1 225,842 + LRK53_RS00890 0.82 -0.8 225,842 + LRK53_RS00890 0.82 +2.2 225,842 + LRK53_RS00890 0.82 -1.4 225,842 + LRK53_RS00890 0.82 -0.4 225,842 + LRK53_RS00890 0.82 -1.3 225,842 + LRK53_RS00890 0.82 -1.3 225,842 + LRK53_RS00890 0.82 -0.8 225,842 + LRK53_RS00890 0.82 -0.2 225,842 + LRK53_RS00890 0.82 -1.2 225,842 + LRK53_RS00890 0.82 -1.4 225,842 + LRK53_RS00890 0.82 -0.8 225,842 + LRK53_RS00890 0.82 -0.5 225,842 + LRK53_RS00890 0.82 +1.5 225,842 + LRK53_RS00890 0.82 -0.4 225,842 + LRK53_RS00890 0.82 -0.4 225,842 + LRK53_RS00890 0.82 +0.9 225,842 + LRK53_RS00890 0.82 -0.5 225,842 + LRK53_RS00890 0.82 +0.9 225,842 + LRK53_RS00890 0.82 -2.1 225,842 + LRK53_RS00890 0.82 -0.4 225,842 + LRK53_RS00890 0.82 -0.5 225,842 + LRK53_RS00890 0.82 -0.6 225,842 + LRK53_RS00890 0.82 +0.0 225,842 + LRK53_RS00890 0.82 +1.8 225,842 + LRK53_RS00890 0.82 -2.1 225,842 + LRK53_RS00890 0.82 -0.6 225,842 + LRK53_RS00890 0.82 +0.9 225,842 + LRK53_RS00890 0.82 +0.9 225,842 + LRK53_RS00890 0.82 -1.0 225,842 + LRK53_RS00890 0.82 -1.6 225,843 - LRK53_RS00890 0.82 -0.2 225,843 - LRK53_RS00890 0.82 -0.6 225,843 - LRK53_RS00890 0.82 -1.5 225,843 - LRK53_RS00890 0.82 -0.1 225,843 - LRK53_RS00890 0.82 -1.0 225,843 - LRK53_RS00890 0.82 +2.4 225,843 - LRK53_RS00890 0.82 +0.0 225,843 - LRK53_RS00890 0.82 +0.6 225,843 - LRK53_RS00890 0.82 -0.2 225,843 - LRK53_RS00890 0.82 -0.7 225,843 - LRK53_RS00890 0.82 -1.1 225,843 - LRK53_RS00890 0.82 -0.4 225,843 - LRK53_RS00890 0.82 -1.0 225,843 - LRK53_RS00890 0.82 -0.9 225,843 - LRK53_RS00890 0.82 -1.5 225,843 - LRK53_RS00890 0.82 -2.2 225,843 - LRK53_RS00890 0.82 -1.8 225,843 - LRK53_RS00890 0.82 +0.2 225,843 - LRK53_RS00890 0.82 -1.7 225,843 - LRK53_RS00890 0.82 -0.1 225,843 - LRK53_RS00890 0.82 +0.9 225,843 - LRK53_RS00890 0.82 -0.6 225,843 - LRK53_RS00890 0.82 -0.5 225,843 - LRK53_RS00890 0.82 -0.2 225,843 - LRK53_RS00890 0.82 +1.0 225,843 - LRK53_RS00890 0.82 -0.2 225,843 - LRK53_RS00890 0.82 -0.8 225,843 - LRK53_RS00890 0.82 -0.3 225,843 - LRK53_RS00890 0.82 +2.9 225,845 + LRK53_RS00890 0.82 +0.5 225,845 + LRK53_RS00890 0.82 -1.0 225,846 - LRK53_RS00890 0.82 +2.1 225,846 - LRK53_RS00890 0.82 -0.3 225,846 - LRK53_RS00890 0.82 -1.4 225,846 - LRK53_RS00890 0.82 +0.9 225,864 - LRK53_RS00890 0.83 +0.1 225,864 - LRK53_RS00890 0.83 +0.4 225,864 - LRK53_RS00890 0.83 +0.3 225,864 - LRK53_RS00890 0.83 -0.5 225,950 + LRK53_RS00890 0.86 -0.7 225,951 - LRK53_RS00890 0.86 -0.8 225,951 - LRK53_RS00890 0.86 -1.3 226,109 + +0.0 226,109 + +1.5 226,109 + -1.5 226,109 + -0.6 226,109 + +0.0 226,109 + -1.3 226,109 + +0.0 226,110 - -0.5 226,346 + +1.6 226,347 - +0.4 226,347 - +0.2 226,347 - -0.2 226,394 - -2.3 226,639 + -1.1 226,640 - -0.5 226,640 - -0.2 226,797 + LRK53_RS00895 0.14 -1.1 226,797 + LRK53_RS00895 0.14 -0.4 226,797 + LRK53_RS00895 0.14 +0.2 226,797 + LRK53_RS00895 0.14 -0.4 226,798 - LRK53_RS00895 0.14 +0.2 226,798 - LRK53_RS00895 0.14 +0.5 226,798 - LRK53_RS00895 0.14 +0.5 226,798 - LRK53_RS00895 0.14 -1.1 226,798 - LRK53_RS00895 0.14 +0.7 227,055 + LRK53_RS00895 0.39 -0.6 227,055 + LRK53_RS00895 0.39 +1.0 227,055 + LRK53_RS00895 0.39 -1.5 227,055 + LRK53_RS00895 0.39 -2.3 227,055 + LRK53_RS00895 0.39 -0.7 227,055 + LRK53_RS00895 0.39 -0.4 227,055 + LRK53_RS00895 0.39 -0.8 227,055 + LRK53_RS00895 0.39 +0.6 227,056 - LRK53_RS00895 0.39 -0.5 227,056 - LRK53_RS00895 0.39 -2.2 227,056 - LRK53_RS00895 0.39 -3.0 227,056 - LRK53_RS00895 0.39 -0.8 227,056 - LRK53_RS00895 0.39 +0.7 227,202 + LRK53_RS00895 0.53 -2.3 227,203 - LRK53_RS00895 0.53 -1.0 227,341 + LRK53_RS00895 0.66 -1.5 227,342 - LRK53_RS00895 0.66 -1.4 227,457 + LRK53_RS00895 0.77 -1.6 227,457 + LRK53_RS00895 0.77 -0.7 227,457 + LRK53_RS00895 0.77 -1.0 227,457 + LRK53_RS00895 0.77 -0.0 227,457 + LRK53_RS00895 0.77 -0.8 227,458 - LRK53_RS00895 0.77 -0.2 227,458 - LRK53_RS00895 0.77 -0.8 227,458 - LRK53_RS00895 0.77 +0.2 227,458 - LRK53_RS00895 0.77 -0.5 227,458 - LRK53_RS00895 0.77 -1.5 227,517 + LRK53_RS00895 0.83 +0.0 227,517 + LRK53_RS00895 0.83 +0.0 227,517 + LRK53_RS00895 0.83 -3.3 227,518 - LRK53_RS00895 0.83 +0.3 227,590 + +0.2 227,590 + +1.9 227,590 + +0.8 227,590 + +2.6 227,591 - -1.4 227,591 - -2.0 227,591 - -0.1 227,591 - -1.7 227,591 - -0.2 227,591 - -0.4 227,591 - -1.9 227,591 - +0.5 227,591 - +1.0 227,591 - -1.4 227,591 - -1.2 227,591 - -1.2 227,591 - -0.4 227,591 - -0.4 227,592 + -0.6 227,592 + -1.5 227,592 + -0.7 227,592 + -1.8 227,592 + -1.1 227,592 + -1.3 227,592 + -0.8 227,592 + -2.1 227,592 + -1.1 227,592 + -0.3 227,592 + -0.6 227,592 + -0.2 227,592 + -0.7 227,592 + -0.3 227,592 + +0.5 227,592 + -2.0 227,592 + +0.5 227,592 + -0.4 227,592 + +0.3 227,593 - -1.5 227,593 - -0.9 227,593 - +0.5 227,593 - -1.2 227,593 - -1.1 227,593 - +2.1 227,593 - -0.2 227,593 - -0.8 227,593 - -0.6 227,593 - -2.7 227,593 - +1.0 227,593 - +0.5 227,593 - -1.5 227,593 - -0.8 227,593 - -1.8 227,593 - -1.0 227,593 - -1.3 227,593 - -0.4 227,593 - -2.0 227,696 + +0.2 227,696 + -0.6 227,696 + -0.1 227,696 + -0.7 227,696 + +0.0 227,696 + +1.6 227,696 + -1.1 227,696 + +0.6 227,696 + -0.3 227,697 - +1.5 227,713 + +1.0 227,714 - -0.7 227,714 - -0.1 227,714 - +0.8 227,714 - -0.6 227,714 - +0.1 227,714 - +0.3 227,714 - -0.1 227,714 - -0.7 227,759 - -1.1 227,759 - -0.7 227,869 + +0.6 227,869 + -0.8 227,869 + +0.5 227,869 + -1.1 227,869 + -0.6 227,869 + -0.7 227,869 + -0.3 227,892 + -1.8 227,893 - +0.8 227,927 + -1.6 227,927 + +0.2 228,173 + LRK53_RS00900 0.20 -1.0 228,173 + LRK53_RS00900 0.20 -0.1 228,174 - LRK53_RS00900 0.20 -0.4 228,232 - LRK53_RS00900 0.24 -2.2 228,232 - LRK53_RS00900 0.24 +0.4
Or see this region's nucleotide sequence