Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00630 and LRK53_RS00635 are separated by 205 nucleotides LRK53_RS00635 and LRK53_RS00640 are separated by 66 nucleotides LRK53_RS00640 and LRK53_RS00645 are separated by 176 nucleotides
LRK53_RS00630: LRK53_RS00630 - prolyl oligopeptidase family serine peptidase, at 142,501 to 144,942
_RS00630
LRK53_RS00635: LRK53_RS00635 - HAD-IB family hydrolase, at 145,148 to 145,741
_RS00635
LRK53_RS00640: LRK53_RS00640 - hypothetical protein, at 145,808 to 146,443
_RS00640
LRK53_RS00645: LRK53_RS00645 - GTP cyclohydrolase I FolE, at 146,620 to 147,243
_RS00645
Position (kb) 145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 144.826 kb on + strand at 144.868 kb on + strand at 144.868 kb on + strand at 144.868 kb on + strand at 144.878 kb on - strand at 144.907 kb on + strand at 144.907 kb on + strand at 144.907 kb on + strand at 144.907 kb on + strand at 144.907 kb on + strand at 144.907 kb on + strand at 144.907 kb on + strand at 144.907 kb on + strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.908 kb on - strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.971 kb on + strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.972 kb on - strand at 144.975 kb on + strand at 144.975 kb on + strand at 144.975 kb on + strand at 144.975 kb on + strand at 144.976 kb on - strand at 144.976 kb on - strand at 144.976 kb on - strand at 144.976 kb on - strand at 144.976 kb on - strand at 144.976 kb on - strand at 144.976 kb on - strand at 144.976 kb on - strand at 145.042 kb on - strand at 145.042 kb on - strand at 145.042 kb on - strand at 145.051 kb on + strand at 145.051 kb on + strand at 145.051 kb on + strand at 145.051 kb on + strand at 145.052 kb on - strand at 145.052 kb on - strand at 145.052 kb on - strand at 145.080 kb on + strand at 145.080 kb on + strand at 145.081 kb on - strand at 145.139 kb on + strand at 145.139 kb on + strand at 145.140 kb on - strand at 145.140 kb on - strand at 145.140 kb on - strand at 145.280 kb on + strand, within LRK53_RS00635 at 145.280 kb on + strand, within LRK53_RS00635 at 145.281 kb on - strand, within LRK53_RS00635 at 145.281 kb on - strand, within LRK53_RS00635 at 145.395 kb on + strand, within LRK53_RS00635 at 145.395 kb on + strand, within LRK53_RS00635 at 145.395 kb on + strand, within LRK53_RS00635 at 145.396 kb on - strand, within LRK53_RS00635 at 145.396 kb on - strand, within LRK53_RS00635 at 145.493 kb on + strand, within LRK53_RS00635 at 145.493 kb on + strand, within LRK53_RS00635 at 145.494 kb on - strand, within LRK53_RS00635 at 145.494 kb on - strand, within LRK53_RS00635 at 145.565 kb on + strand, within LRK53_RS00635 at 145.566 kb on - strand, within LRK53_RS00635 at 145.566 kb on - strand, within LRK53_RS00635 at 145.631 kb on + strand, within LRK53_RS00635 at 145.631 kb on + strand, within LRK53_RS00635 at 145.631 kb on + strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.658 kb on + strand, within LRK53_RS00635 at 145.659 kb on - strand, within LRK53_RS00635 at 145.715 kb on + strand at 145.715 kb on + strand at 145.715 kb on + strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.856 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.980 kb on + strand, within LRK53_RS00640 at 145.980 kb on + strand, within LRK53_RS00640 at 145.980 kb on + strand, within LRK53_RS00640 at 145.980 kb on + strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 146.163 kb on + strand, within LRK53_RS00640 at 146.164 kb on - strand, within LRK53_RS00640 at 146.307 kb on + strand, within LRK53_RS00640 at 146.307 kb on + strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.490 kb on + strand at 146.490 kb on + strand at 146.491 kb on - strand at 146.491 kb on - strand at 146.491 kb on - strand at 146.491 kb on - strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.601 kb on + strand at 146.794 kb on + strand, within LRK53_RS00645 at 146.794 kb on + strand, within LRK53_RS00645 at 146.794 kb on + strand, within LRK53_RS00645 at 146.795 kb on - strand, within LRK53_RS00645 at 146.795 kb on - strand, within LRK53_RS00645 at 146.959 kb on + strand, within LRK53_RS00645 at 146.959 kb on + strand, within LRK53_RS00645 at 147.256 kb on - strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 144,826 + +2.2 144,868 + -0.2 144,868 + -0.1 144,868 + +0.3 144,878 - +0.4 144,907 + -1.3 144,907 + -1.0 144,907 + -0.5 144,907 + -1.2 144,907 + -1.4 144,907 + -0.9 144,907 + -0.2 144,907 + -1.2 144,908 - -1.1 144,908 - -1.3 144,908 - -1.1 144,908 - -0.7 144,908 - -0.0 144,908 - +0.5 144,908 - -0.0 144,908 - -0.4 144,908 - -0.8 144,908 - +0.5 144,908 - -0.7 144,908 - +0.0 144,971 + -0.6 144,971 + +0.9 144,971 + -0.7 144,971 + -0.3 144,971 + -1.2 144,971 + -0.1 144,971 + -0.6 144,971 + -0.5 144,971 + -0.6 144,971 + -1.1 144,971 + -0.7 144,971 + -1.4 144,971 + -0.0 144,972 - -0.6 144,972 - -1.2 144,972 - -0.8 144,972 - -1.7 144,972 - -0.8 144,972 - -1.5 144,972 - -0.5 144,972 - -0.2 144,972 - -0.0 144,972 - +1.0 144,972 - +0.5 144,972 - -0.5 144,972 - +0.0 144,972 - -0.2 144,972 - +0.5 144,975 + +0.4 144,975 + -0.2 144,975 + -0.9 144,975 + +1.5 144,976 - +1.4 144,976 - -1.1 144,976 - -0.7 144,976 - +0.4 144,976 - -2.2 144,976 - -0.1 144,976 - -3.2 144,976 - -2.1 145,042 - +0.3 145,042 - -0.6 145,042 - -1.1 145,051 + -0.4 145,051 + +0.8 145,051 + +1.3 145,051 + -1.5 145,052 - +0.9 145,052 - -0.4 145,052 - -2.5 145,080 + +1.0 145,080 + -0.4 145,081 - -1.9 145,139 + -0.7 145,139 + +1.0 145,140 - -1.0 145,140 - -0.4 145,140 - -1.2 145,280 + LRK53_RS00635 0.22 +0.0 145,280 + LRK53_RS00635 0.22 -1.5 145,281 - LRK53_RS00635 0.22 -0.8 145,281 - LRK53_RS00635 0.22 -2.5 145,395 + LRK53_RS00635 0.42 -1.1 145,395 + LRK53_RS00635 0.42 +0.7 145,395 + LRK53_RS00635 0.42 -2.2 145,396 - LRK53_RS00635 0.42 +0.4 145,396 - LRK53_RS00635 0.42 +1.4 145,493 + LRK53_RS00635 0.58 -0.7 145,493 + LRK53_RS00635 0.58 -2.2 145,494 - LRK53_RS00635 0.58 -1.3 145,494 - LRK53_RS00635 0.58 -1.0 145,565 + LRK53_RS00635 0.70 +0.2 145,566 - LRK53_RS00635 0.70 +0.6 145,566 - LRK53_RS00635 0.70 -1.8 145,631 + LRK53_RS00635 0.81 +0.8 145,631 + LRK53_RS00635 0.81 +0.0 145,631 + LRK53_RS00635 0.81 -0.0 145,632 - LRK53_RS00635 0.81 -1.1 145,632 - LRK53_RS00635 0.81 +0.8 145,632 - LRK53_RS00635 0.81 -0.8 145,632 - LRK53_RS00635 0.81 -0.2 145,632 - LRK53_RS00635 0.81 -0.9 145,658 + LRK53_RS00635 0.86 -1.1 145,659 - LRK53_RS00635 0.86 -0.4 145,715 + -1.8 145,715 + -0.6 145,715 + -1.3 145,716 - +2.2 145,716 - -0.0 145,716 - +0.0 145,716 - -0.1 145,716 - +1.3 145,716 - +0.9 145,856 + -0.1 145,863 + -2.6 145,863 + +0.8 145,863 + -0.9 145,863 + -0.8 145,863 + +0.6 145,863 + -1.0 145,863 + -1.2 145,863 + -0.2 145,863 + -0.3 145,863 + -1.8 145,863 + -0.6 145,863 + -0.7 145,864 - -0.8 145,864 - -2.5 145,864 - -0.8 145,864 - -0.0 145,864 - -0.7 145,864 - -0.6 145,864 - +0.0 145,864 - -0.9 145,864 - +0.3 145,864 - -0.7 145,864 - -1.4 145,864 - +0.7 145,864 - +0.7 145,864 - -1.8 145,864 - +0.5 145,864 - -2.5 145,864 - -0.3 145,864 - -1.0 145,864 - -1.8 145,864 - -1.4 145,864 - +0.6 145,864 - -1.1 145,864 - -0.4 145,980 + LRK53_RS00640 0.27 -0.7 145,980 + LRK53_RS00640 0.27 +0.6 145,980 + LRK53_RS00640 0.27 -3.1 145,980 + LRK53_RS00640 0.27 +0.5 145,981 - LRK53_RS00640 0.27 -0.1 145,981 - LRK53_RS00640 0.27 +0.2 145,981 - LRK53_RS00640 0.27 -1.6 145,981 - LRK53_RS00640 0.27 +0.6 145,981 - LRK53_RS00640 0.27 -0.0 146,163 + LRK53_RS00640 0.56 +0.0 146,164 - LRK53_RS00640 0.56 -2.0 146,307 + LRK53_RS00640 0.78 -1.4 146,307 + LRK53_RS00640 0.78 +0.2 146,308 - LRK53_RS00640 0.79 +0.5 146,308 - LRK53_RS00640 0.79 -1.0 146,308 - LRK53_RS00640 0.79 +0.7 146,308 - LRK53_RS00640 0.79 +0.3 146,308 - LRK53_RS00640 0.79 -1.0 146,308 - LRK53_RS00640 0.79 -0.1 146,343 + LRK53_RS00640 0.84 -1.2 146,343 + LRK53_RS00640 0.84 +1.3 146,343 + LRK53_RS00640 0.84 -1.7 146,343 + LRK53_RS00640 0.84 -0.1 146,343 + LRK53_RS00640 0.84 +0.8 146,343 + LRK53_RS00640 0.84 +0.6 146,343 + LRK53_RS00640 0.84 +0.7 146,343 + LRK53_RS00640 0.84 -1.0 146,343 + LRK53_RS00640 0.84 -1.6 146,343 + LRK53_RS00640 0.84 -0.8 146,343 + LRK53_RS00640 0.84 -1.5 146,343 + LRK53_RS00640 0.84 +0.6 146,343 + LRK53_RS00640 0.84 -0.3 146,343 + LRK53_RS00640 0.84 +0.2 146,343 + LRK53_RS00640 0.84 -0.2 146,343 + LRK53_RS00640 0.84 -2.1 146,343 + LRK53_RS00640 0.84 -0.7 146,343 + LRK53_RS00640 0.84 +0.0 146,343 + LRK53_RS00640 0.84 -0.7 146,344 - LRK53_RS00640 0.84 -2.3 146,344 - LRK53_RS00640 0.84 -1.3 146,344 - LRK53_RS00640 0.84 -0.7 146,344 - LRK53_RS00640 0.84 -4.6 146,344 - LRK53_RS00640 0.84 -0.7 146,344 - LRK53_RS00640 0.84 -1.3 146,344 - LRK53_RS00640 0.84 -0.0 146,344 - LRK53_RS00640 0.84 -0.9 146,344 - LRK53_RS00640 0.84 -0.5 146,344 - LRK53_RS00640 0.84 +0.5 146,344 - LRK53_RS00640 0.84 -2.0 146,344 - LRK53_RS00640 0.84 +1.0 146,344 - LRK53_RS00640 0.84 -0.8 146,344 - LRK53_RS00640 0.84 -0.5 146,344 - LRK53_RS00640 0.84 -1.3 146,344 - LRK53_RS00640 0.84 -0.7 146,344 - LRK53_RS00640 0.84 -1.0 146,344 - LRK53_RS00640 0.84 -1.4 146,344 - LRK53_RS00640 0.84 -0.8 146,344 - LRK53_RS00640 0.84 -0.7 146,344 - LRK53_RS00640 0.84 -0.7 146,344 - LRK53_RS00640 0.84 +1.0 146,344 - LRK53_RS00640 0.84 -1.0 146,344 - LRK53_RS00640 0.84 -0.5 146,344 - LRK53_RS00640 0.84 -0.9 146,344 - LRK53_RS00640 0.84 -0.4 146,344 - LRK53_RS00640 0.84 -0.6 146,344 - LRK53_RS00640 0.84 -1.2 146,490 + +1.8 146,490 + +0.0 146,491 - +2.2 146,491 - -0.2 146,491 - -1.1 146,491 - -1.3 146,492 + -0.4 146,492 + -0.1 146,492 + -0.4 146,492 + -2.3 146,492 + -0.5 146,492 + -0.6 146,492 + -0.1 146,492 + -2.6 146,493 - -1.3 146,493 - -0.4 146,493 - -0.8 146,493 - -0.1 146,493 - -1.1 146,493 - -1.0 146,493 - -0.9 146,498 + -0.4 146,498 + +2.2 146,498 + -0.7 146,498 + -0.7 146,498 + -0.8 146,498 + -1.8 146,498 + -0.5 146,499 - +0.1 146,499 - -0.8 146,499 - -2.0 146,499 - +0.2 146,499 - -1.1 146,499 - +1.2 146,499 - -0.7 146,499 - +0.1 146,601 + +0.4 146,794 + LRK53_RS00645 0.28 +1.6 146,794 + LRK53_RS00645 0.28 -0.4 146,794 + LRK53_RS00645 0.28 -1.2 146,795 - LRK53_RS00645 0.28 +2.5 146,795 - LRK53_RS00645 0.28 -0.8 146,959 + LRK53_RS00645 0.54 -0.5 146,959 + LRK53_RS00645 0.54 +0.3 147,256 - -1.7 147,435 + +0.5 147,435 + -0.1 147,435 + +1.6 147,435 + +0.5 147,435 + +0.1 147,435 + -1.8 147,435 + +0.6 147,436 - +0.5 147,436 - -1.3 147,436 - -1.2 147,436 - +1.2
Or see this region's nucleotide sequence