Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00415 and LRK53_RS00420 overlap by 4 nucleotides LRK53_RS00420 and LRK53_RS00425 are separated by 280 nucleotides LRK53_RS00425 and LRK53_RS00430 are separated by 262 nucleotides LRK53_RS00430 and LRK53_RS00435 are separated by 117 nucleotides
LRK53_RS00415: LRK53_RS00415 - DsbA family protein, at 93,927 to 94,478
_RS00415
LRK53_RS00420: LRK53_RS00420 - redoxin domain-containing protein, at 94,475 to 94,987
_RS00420
LRK53_RS00425: LRK53_RS00425 - mercuric reductase, at 95,268 to 96,680
_RS00425
LRK53_RS00430: LRK53_RS00430 - conjugal transfer protein TraR, at 96,943 to 97,338
_RS00430
LRK53_RS00435: LRK53_RS00435 - S8 family serine peptidase, at 97,456 to 98,742
_RS00435
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 94.424 kb on + strand at 94.424 kb on + strand at 94.424 kb on + strand at 94.425 kb on - strand at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.665 kb on + strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420 at 94.830 kb on + strand, within LRK53_RS00420 at 94.830 kb on + strand, within LRK53_RS00420 at 94.830 kb on + strand, within LRK53_RS00420 at 94.830 kb on + strand, within LRK53_RS00420 at 94.831 kb on - strand, within LRK53_RS00420 at 94.831 kb on - strand, within LRK53_RS00420 at 94.831 kb on - strand, within LRK53_RS00420 at 94.875 kb on + strand, within LRK53_RS00420 at 94.875 kb on + strand, within LRK53_RS00420 at 94.876 kb on - strand, within LRK53_RS00420 at 94.997 kb on + strand at 94.998 kb on - strand at 94.998 kb on - strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.313 kb on + strand at 95.313 kb on + strand at 95.314 kb on - strand at 95.371 kb on + strand at 95.371 kb on + strand at 95.371 kb on + strand at 95.372 kb on - strand at 95.629 kb on + strand, within LRK53_RS00425 at 95.629 kb on + strand, within LRK53_RS00425 at 95.794 kb on + strand, within LRK53_RS00425 at 95.794 kb on + strand, within LRK53_RS00425 at 95.794 kb on + strand, within LRK53_RS00425 at 95.794 kb on + strand, within LRK53_RS00425 at 95.795 kb on - strand, within LRK53_RS00425 at 95.795 kb on - strand, within LRK53_RS00425 at 95.795 kb on - strand, within LRK53_RS00425 at 95.795 kb on - strand, within LRK53_RS00425 at 95.846 kb on + strand, within LRK53_RS00425 at 95.846 kb on + strand, within LRK53_RS00425 at 95.847 kb on - strand, within LRK53_RS00425 at 95.847 kb on - strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.216 kb on + strand, within LRK53_RS00425 at 96.253 kb on + strand, within LRK53_RS00425 at 96.254 kb on - strand, within LRK53_RS00425 at 96.254 kb on - strand, within LRK53_RS00425 at 96.367 kb on + strand, within LRK53_RS00425 at 96.367 kb on + strand, within LRK53_RS00425 at 96.368 kb on - strand, within LRK53_RS00425 at 96.368 kb on - strand, within LRK53_RS00425 at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.658 kb on + strand at 96.658 kb on + strand at 96.659 kb on - strand at 96.659 kb on - strand at 96.659 kb on - strand at 96.659 kb on - strand at 96.700 kb on - strand at 96.732 kb on + strand at 96.732 kb on + strand at 96.746 kb on + strand at 96.747 kb on - strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.891 kb on - strand at 96.945 kb on - strand at 97.058 kb on + strand, within LRK53_RS00430 at 97.058 kb on + strand, within LRK53_RS00430 at 97.058 kb on + strand, within LRK53_RS00430 at 97.059 kb on - strand, within LRK53_RS00430 at 97.380 kb on + strand at 97.380 kb on + strand at 97.380 kb on + strand at 97.380 kb on + strand at 97.380 kb on + strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.413 kb on - strand at 97.546 kb on + strand at 97.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 94,424 + -1.4 94,424 + -1.2 94,424 + -0.1 94,425 - -0.9 94,593 + LRK53_RS00420 0.23 -1.6 94,593 + LRK53_RS00420 0.23 +0.3 94,593 + LRK53_RS00420 0.23 -0.5 94,593 + LRK53_RS00420 0.23 +0.4 94,593 + LRK53_RS00420 0.23 -0.1 94,593 + LRK53_RS00420 0.23 -0.8 94,593 + LRK53_RS00420 0.23 -0.7 94,593 + LRK53_RS00420 0.23 +0.9 94,593 + LRK53_RS00420 0.23 -1.0 94,593 + LRK53_RS00420 0.23 +0.5 94,593 + LRK53_RS00420 0.23 -1.2 94,593 + LRK53_RS00420 0.23 -0.1 94,593 + LRK53_RS00420 0.23 +0.9 94,593 + LRK53_RS00420 0.23 -0.1 94,593 + LRK53_RS00420 0.23 -1.4 94,594 - LRK53_RS00420 0.23 -1.8 94,594 - LRK53_RS00420 0.23 -0.7 94,594 - LRK53_RS00420 0.23 -0.7 94,594 - LRK53_RS00420 0.23 -0.2 94,594 - LRK53_RS00420 0.23 +0.8 94,594 - LRK53_RS00420 0.23 -1.0 94,594 - LRK53_RS00420 0.23 +0.9 94,594 - LRK53_RS00420 0.23 +1.6 94,594 - LRK53_RS00420 0.23 -1.9 94,594 - LRK53_RS00420 0.23 -0.5 94,665 + LRK53_RS00420 0.37 -1.3 94,666 - LRK53_RS00420 0.37 -0.4 94,666 - LRK53_RS00420 0.37 -1.3 94,830 + LRK53_RS00420 0.69 +0.8 94,830 + LRK53_RS00420 0.69 -0.4 94,830 + LRK53_RS00420 0.69 -0.6 94,830 + LRK53_RS00420 0.69 -1.2 94,831 - LRK53_RS00420 0.69 +0.1 94,831 - LRK53_RS00420 0.69 -1.4 94,831 - LRK53_RS00420 0.69 +0.5 94,875 + LRK53_RS00420 0.78 +1.6 94,875 + LRK53_RS00420 0.78 +0.6 94,876 - LRK53_RS00420 0.78 -1.5 94,997 + -1.5 94,998 - +0.6 94,998 - -1.0 95,171 + +0.3 95,171 + +0.3 95,171 + +0.0 95,171 + +0.6 95,171 + -1.0 95,171 + -0.8 95,171 + -0.6 95,171 + -0.3 95,171 + -1.5 95,171 + -0.1 95,172 - +1.2 95,172 - +1.9 95,172 - -0.8 95,172 - +1.2 95,172 - -0.5 95,172 - -0.5 95,172 - +0.9 95,172 - -1.9 95,172 - -1.0 95,172 - -2.5 95,172 - -0.5 95,172 - -1.1 95,172 - +0.0 95,313 + -0.5 95,313 + +1.2 95,314 - +0.9 95,371 + +0.0 95,371 + -2.3 95,371 + +0.0 95,372 - -0.7 95,629 + LRK53_RS00425 0.26 +0.1 95,629 + LRK53_RS00425 0.26 -0.9 95,794 + LRK53_RS00425 0.37 +1.5 95,794 + LRK53_RS00425 0.37 -1.1 95,794 + LRK53_RS00425 0.37 -2.9 95,794 + LRK53_RS00425 0.37 -1.4 95,795 - LRK53_RS00425 0.37 -0.7 95,795 - LRK53_RS00425 0.37 -1.0 95,795 - LRK53_RS00425 0.37 +0.3 95,795 - LRK53_RS00425 0.37 -2.2 95,846 + LRK53_RS00425 0.41 +0.2 95,846 + LRK53_RS00425 0.41 -1.5 95,847 - LRK53_RS00425 0.41 -0.7 95,847 - LRK53_RS00425 0.41 -0.3 96,124 + LRK53_RS00425 0.61 +0.5 96,124 + LRK53_RS00425 0.61 -0.5 96,124 + LRK53_RS00425 0.61 -0.9 96,124 + LRK53_RS00425 0.61 -0.5 96,124 + LRK53_RS00425 0.61 -2.5 96,124 + LRK53_RS00425 0.61 -0.5 96,124 + LRK53_RS00425 0.61 +0.2 96,125 - LRK53_RS00425 0.61 +1.6 96,125 - LRK53_RS00425 0.61 +0.3 96,125 - LRK53_RS00425 0.61 +0.4 96,125 - LRK53_RS00425 0.61 -0.5 96,125 - LRK53_RS00425 0.61 -2.0 96,125 - LRK53_RS00425 0.61 +0.8 96,125 - LRK53_RS00425 0.61 -1.1 96,125 - LRK53_RS00425 0.61 -1.8 96,216 + LRK53_RS00425 0.67 +1.4 96,253 + LRK53_RS00425 0.70 -1.5 96,254 - LRK53_RS00425 0.70 -0.0 96,254 - LRK53_RS00425 0.70 -0.4 96,367 + LRK53_RS00425 0.78 -1.6 96,367 + LRK53_RS00425 0.78 -0.9 96,368 - LRK53_RS00425 0.78 +1.0 96,368 - LRK53_RS00425 0.78 -0.5 96,619 + -0.5 96,619 + -1.4 96,619 + -1.3 96,619 + -2.0 96,619 + +1.9 96,619 + +0.2 96,619 + -2.1 96,619 + -0.2 96,619 + -1.7 96,620 - -0.8 96,620 - -0.6 96,620 - -0.5 96,620 - -0.1 96,620 - +0.9 96,620 - +1.5 96,620 - -0.2 96,658 + +0.6 96,658 + +0.0 96,659 - -0.8 96,659 - -0.7 96,659 - -1.0 96,659 - -0.2 96,700 - -1.2 96,732 + +0.1 96,732 + -0.9 96,746 + +0.1 96,747 - -1.3 96,751 + -1.1 96,751 + +0.3 96,751 + -1.1 96,751 + +0.5 96,752 - -0.7 96,752 - -1.5 96,752 - -0.3 96,752 - -0.7 96,752 - +0.2 96,891 - -0.1 96,945 - -0.7 97,058 + LRK53_RS00430 0.29 -0.5 97,058 + LRK53_RS00430 0.29 -0.9 97,058 + LRK53_RS00430 0.29 +0.3 97,059 - LRK53_RS00430 0.29 -2.0 97,380 + -1.3 97,380 + -1.6 97,380 + -1.2 97,380 + +0.7 97,380 + -2.2 97,381 - +1.4 97,381 - -0.9 97,381 - -0.7 97,381 - -0.9 97,381 - +0.3 97,381 - -0.1 97,381 - +0.3 97,413 - -3.0 97,546 + -0.8 97,547 - +0.8
Or see this region's nucleotide sequence