Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeG and ymgF are separated by 131 nucleotides ymgF and aidA are separated by 399 nucleotides aidA and ymgD are separated by 57 nucleotides ymgD and ymgG are separated by 9 nucleotides
HEPCGN_24630: pdeG - putative cyclic di-GMP phosphodiesterase PdeG, at 3,681,392 to 3,682,915
pdeG
HEPCGN_24635: ymgF - Inner membrane protein YmgF, at 3,683,047 to 3,683,265
ymgF
HEPCGN_24640: aidA - Autotransporter adhesin AidA, at 3,683,665 to 3,686,313
aidA
HEPCGN_24645: ymgD - Uncharacterized protein YmgD, at 3,686,371 to 3,686,700
ymgD
HEPCGN_24650: ymgG - UPF0757 protein YmgG, at 3,686,710 to 3,686,994
ymgG
Position (kb) 3683
3684
3685
3686
3687 Strain fitness (log2 ratio) -1
0
1
2 at 3682.725 kb on + strand, within pdeG at 3682.841 kb on + strand at 3682.852 kb on + strand at 3682.856 kb on + strand at 3682.927 kb on + strand at 3682.949 kb on + strand at 3682.959 kb on + strand at 3683.041 kb on - strand at 3683.072 kb on - strand, within ymgF at 3683.084 kb on - strand, within ymgF at 3683.086 kb on - strand, within ymgF at 3683.133 kb on + strand, within ymgF at 3683.134 kb on - strand, within ymgF at 3683.264 kb on - strand at 3683.356 kb on - strand at 3683.393 kb on + strand at 3683.521 kb on - strand at 3683.525 kb on - strand at 3683.761 kb on - strand at 3683.949 kb on + strand, within aidA at 3684.003 kb on + strand, within aidA at 3684.081 kb on - strand, within aidA at 3684.252 kb on + strand, within aidA at 3684.299 kb on + strand, within aidA at 3684.300 kb on - strand, within aidA at 3684.332 kb on - strand, within aidA at 3684.625 kb on - strand, within aidA at 3684.699 kb on + strand, within aidA at 3684.714 kb on - strand, within aidA at 3684.982 kb on - strand, within aidA at 3685.355 kb on - strand, within aidA at 3685.427 kb on - strand, within aidA at 3685.693 kb on - strand, within aidA at 3685.706 kb on - strand, within aidA at 3685.769 kb on - strand, within aidA at 3685.805 kb on + strand, within aidA at 3685.903 kb on + strand, within aidA at 3685.905 kb on + strand, within aidA at 3685.956 kb on + strand, within aidA at 3685.957 kb on - strand, within aidA at 3686.046 kb on + strand, within aidA at 3686.115 kb on + strand at 3686.270 kb on - strand at 3686.302 kb on + strand at 3686.327 kb on + strand at 3686.599 kb on - strand, within ymgD at 3686.601 kb on + strand, within ymgD at 3686.603 kb on + strand, within ymgD at 3686.628 kb on + strand, within ymgD at 3686.722 kb on - strand at 3686.763 kb on + strand, within ymgG at 3686.938 kb on + strand, within ymgG at 3687.024 kb on + strand at 3687.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 3,682,725 + pdeG HEPCGN_24630 0.87 -0.6 3,682,841 + +0.8 3,682,852 + -0.0 3,682,856 + -0.1 3,682,927 + +0.1 3,682,949 + -0.1 3,682,959 + +0.9 3,683,041 - -0.0 3,683,072 - ymgF HEPCGN_24635 0.11 +0.5 3,683,084 - ymgF HEPCGN_24635 0.17 -0.4 3,683,086 - ymgF HEPCGN_24635 0.18 -0.1 3,683,133 + ymgF HEPCGN_24635 0.39 -0.6 3,683,134 - ymgF HEPCGN_24635 0.40 -0.3 3,683,264 - -0.3 3,683,356 - -0.9 3,683,393 + -0.4 3,683,521 - +1.0 3,683,525 - +0.8 3,683,761 - -0.5 3,683,949 + aidA HEPCGN_24640 0.11 -0.3 3,684,003 + aidA HEPCGN_24640 0.13 -0.2 3,684,081 - aidA HEPCGN_24640 0.16 +0.6 3,684,252 + aidA HEPCGN_24640 0.22 -0.1 3,684,299 + aidA HEPCGN_24640 0.24 -0.1 3,684,300 - aidA HEPCGN_24640 0.24 -0.4 3,684,332 - aidA HEPCGN_24640 0.25 +0.6 3,684,625 - aidA HEPCGN_24640 0.36 +0.1 3,684,699 + aidA HEPCGN_24640 0.39 +0.4 3,684,714 - aidA HEPCGN_24640 0.40 -0.1 3,684,982 - aidA HEPCGN_24640 0.50 -0.3 3,685,355 - aidA HEPCGN_24640 0.64 +2.3 3,685,427 - aidA HEPCGN_24640 0.67 -0.4 3,685,693 - aidA HEPCGN_24640 0.77 +0.2 3,685,706 - aidA HEPCGN_24640 0.77 +0.1 3,685,769 - aidA HEPCGN_24640 0.79 -0.3 3,685,805 + aidA HEPCGN_24640 0.81 +0.1 3,685,903 + aidA HEPCGN_24640 0.84 +0.9 3,685,905 + aidA HEPCGN_24640 0.85 +0.2 3,685,956 + aidA HEPCGN_24640 0.86 +0.4 3,685,957 - aidA HEPCGN_24640 0.87 -1.6 3,686,046 + aidA HEPCGN_24640 0.90 -0.7 3,686,115 + +1.1 3,686,270 - -0.1 3,686,302 + -0.3 3,686,327 + +0.7 3,686,599 - ymgD HEPCGN_24645 0.69 -0.4 3,686,601 + ymgD HEPCGN_24645 0.70 +0.6 3,686,603 + ymgD HEPCGN_24645 0.70 -0.9 3,686,628 + ymgD HEPCGN_24645 0.78 -0.0 3,686,722 - +2.3 3,686,763 + ymgG HEPCGN_24650 0.19 -1.7 3,686,938 + ymgG HEPCGN_24650 0.80 +1.1 3,687,024 + +1.5 3,687,058 - +0.2
Or see this region's nucleotide sequence