Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimD and fimD are separated by 108 nucleotides fimD and HEPCGN_09005 are separated by 12 nucleotides HEPCGN_09005 and nhaR are separated by 37 nucleotides
HEPCGN_08995: fimD - fimbrial assembly protein, at 545,643 to 547,610
fimD
HEPCGN_09000: fimD - fimbrial assembly protein, at 547,719 to 548,093
fimD
HEPCGN_09005: HEPCGN_09005 - fimbrial family protein, at 548,106 to 549,065
_09005
HEPCGN_09010: nhaR - transcriptional activator NhaR, at 549,103 to 550,002
nhaR
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1 at 547.124 kb on - strand, within fimD at 547.434 kb on + strand at 547.510 kb on + strand at 547.592 kb on + strand at 547.757 kb on - strand, within fimD at 547.857 kb on - strand, within fimD at 547.867 kb on - strand, within fimD at 547.869 kb on - strand, within fimD at 547.869 kb on - strand, within fimD at 547.871 kb on - strand, within fimD at 547.900 kb on + strand, within fimD at 547.940 kb on + strand, within fimD at 548.082 kb on - strand at 548.435 kb on - strand, within HEPCGN_09005 at 548.793 kb on + strand, within HEPCGN_09005 at 548.878 kb on + strand, within HEPCGN_09005 at 548.935 kb on - strand, within HEPCGN_09005 at 548.935 kb on - strand, within HEPCGN_09005 at 548.937 kb on + strand, within HEPCGN_09005 at 548.980 kb on + strand at 549.057 kb on + strand at 549.057 kb on + strand at 549.058 kb on - strand at 549.063 kb on + strand at 549.064 kb on - strand at 549.082 kb on + strand at 549.083 kb on - strand at 549.134 kb on + strand at 549.135 kb on - strand at 549.141 kb on + strand at 549.201 kb on - strand, within nhaR at 549.201 kb on - strand, within nhaR at 549.264 kb on - strand, within nhaR at 549.269 kb on + strand, within nhaR at 549.270 kb on - strand, within nhaR at 549.356 kb on - strand, within nhaR at 549.541 kb on - strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.590 kb on - strand, within nhaR at 549.652 kb on + strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.670 kb on + strand, within nhaR at 549.671 kb on - strand, within nhaR at 549.691 kb on - strand, within nhaR at 549.743 kb on + strand, within nhaR at 549.744 kb on - strand, within nhaR at 549.795 kb on - strand, within nhaR at 549.917 kb on + strand at 549.957 kb on - strand at 549.972 kb on - strand at 549.987 kb on - strand at 549.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 547,124 - fimD HEPCGN_08995 0.75 -1.5 547,434 + -0.0 547,510 + -0.4 547,592 + +0.3 547,757 - fimD HEPCGN_09000 0.10 -0.6 547,857 - fimD HEPCGN_09000 0.37 -1.0 547,867 - fimD HEPCGN_09000 0.39 +0.2 547,869 - fimD HEPCGN_09000 0.40 +0.3 547,869 - fimD HEPCGN_09000 0.40 -0.2 547,871 - fimD HEPCGN_09000 0.41 +0.1 547,900 + fimD HEPCGN_09000 0.48 +0.0 547,940 + fimD HEPCGN_09000 0.59 +0.2 548,082 - -0.3 548,435 - HEPCGN_09005 0.34 -0.2 548,793 + HEPCGN_09005 0.72 +0.5 548,878 + HEPCGN_09005 0.80 +1.5 548,935 - HEPCGN_09005 0.86 +1.5 548,935 - HEPCGN_09005 0.86 +0.0 548,937 + HEPCGN_09005 0.87 +0.5 548,980 + -0.1 549,057 + +0.2 549,057 + +0.0 549,058 - -0.8 549,063 + -0.3 549,064 - -0.5 549,082 + +0.6 549,083 - -0.5 549,134 + -0.2 549,135 - -0.4 549,141 + -0.6 549,201 - nhaR HEPCGN_09010 0.11 -0.0 549,201 - nhaR HEPCGN_09010 0.11 -1.0 549,264 - nhaR HEPCGN_09010 0.18 -0.1 549,269 + nhaR HEPCGN_09010 0.18 -0.6 549,270 - nhaR HEPCGN_09010 0.19 -0.5 549,356 - nhaR HEPCGN_09010 0.28 +0.4 549,541 - nhaR HEPCGN_09010 0.49 +0.0 549,589 + nhaR HEPCGN_09010 0.54 +0.2 549,589 + nhaR HEPCGN_09010 0.54 -0.1 549,589 + nhaR HEPCGN_09010 0.54 +0.5 549,590 - nhaR HEPCGN_09010 0.54 +0.0 549,652 + nhaR HEPCGN_09010 0.61 -0.3 549,667 - nhaR HEPCGN_09010 0.63 -0.3 549,667 - nhaR HEPCGN_09010 0.63 +0.3 549,670 + nhaR HEPCGN_09010 0.63 +0.0 549,671 - nhaR HEPCGN_09010 0.63 -1.3 549,691 - nhaR HEPCGN_09010 0.65 -0.4 549,743 + nhaR HEPCGN_09010 0.71 +0.1 549,744 - nhaR HEPCGN_09010 0.71 +0.0 549,795 - nhaR HEPCGN_09010 0.77 -1.9 549,917 + -0.7 549,957 - -0.1 549,972 - -0.1 549,987 - +0.6 549,987 - +0.2
Or see this region's nucleotide sequence