Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rdgC and ykiD are separated by 77 nucleotides ykiD and HEPCGN_07220 are separated by 199 nucleotides HEPCGN_07220 and ppnP are separated by 103 nucleotides ppnP and aroM are separated by 71 nucleotides aroM and yaiA are separated by 257 nucleotides yaiA and aroL are separated by 49 nucleotides
HEPCGN_07210: rdgC - recombination-associated protein RdgC, at 179,061 to 180,038
rdgC
HEPCGN_07215: ykiD - Protein YkiD, at 180,116 to 180,199
ykiD
HEPCGN_07220: HEPCGN_07220 - hypothetical protein, at 180,399 to 180,578
_07220
HEPCGN_07225: ppnP - pyrimidine/purine nucleoside phosphorylase, at 180,682 to 180,966
ppnP
HEPCGN_07230: aroM - Protein AroM, at 181,038 to 181,715
aroM
HEPCGN_07235: yaiA - Uncharacterized protein YaiA, at 181,973 to 182,164
yaiA
HEPCGN_07240: aroL - shikimate kinase AroL, at 182,214 to 182,738
aroL
Position (kb) 181
182 Strain fitness (log2 ratio) -1
0
1
2 at 180.048 kb on + strand at 180.113 kb on + strand at 180.114 kb on - strand at 180.114 kb on - strand at 180.114 kb on - strand at 180.155 kb on - strand, within ykiD at 180.158 kb on - strand, within ykiD at 180.167 kb on - strand, within ykiD at 180.167 kb on - strand, within ykiD at 180.167 kb on - strand, within ykiD at 180.173 kb on + strand, within ykiD at 180.420 kb on + strand, within HEPCGN_07220 at 180.420 kb on + strand, within HEPCGN_07220 at 180.421 kb on - strand, within HEPCGN_07220 at 180.421 kb on - strand, within HEPCGN_07220 at 180.580 kb on + strand at 180.580 kb on + strand at 180.581 kb on - strand at 180.615 kb on + strand at 180.619 kb on - strand at 180.684 kb on - strand at 180.701 kb on + strand at 180.863 kb on + strand, within ppnP at 180.879 kb on + strand, within ppnP at 180.880 kb on - strand, within ppnP at 180.926 kb on + strand, within ppnP at 180.947 kb on + strand at 180.997 kb on - strand at 181.048 kb on - strand at 181.048 kb on - strand at 181.075 kb on - strand at 181.245 kb on + strand, within aroM at 181.246 kb on - strand, within aroM at 181.341 kb on - strand, within aroM at 181.388 kb on + strand, within aroM at 181.389 kb on - strand, within aroM at 181.391 kb on + strand, within aroM at 181.406 kb on + strand, within aroM at 181.407 kb on - strand, within aroM at 181.409 kb on + strand, within aroM at 181.410 kb on - strand, within aroM at 181.422 kb on - strand, within aroM at 181.429 kb on - strand, within aroM at 181.432 kb on - strand, within aroM at 181.432 kb on - strand, within aroM at 181.434 kb on - strand, within aroM at 181.496 kb on + strand, within aroM at 181.530 kb on + strand, within aroM at 181.531 kb on - strand, within aroM at 181.597 kb on - strand, within aroM at 181.628 kb on + strand, within aroM at 181.642 kb on + strand, within aroM at 181.674 kb on - strand at 181.677 kb on + strand at 181.729 kb on + strand at 181.784 kb on + strand at 181.784 kb on + strand at 181.794 kb on - strand at 181.812 kb on - strand at 181.812 kb on - strand at 182.126 kb on + strand, within yaiA at 182.127 kb on - strand, within yaiA at 182.127 kb on - strand, within yaiA at 182.128 kb on + strand, within yaiA at 182.128 kb on + strand, within yaiA at 182.128 kb on + strand, within yaiA at 182.129 kb on - strand, within yaiA at 182.129 kb on - strand, within yaiA at 182.129 kb on - strand, within yaiA at 182.130 kb on + strand, within yaiA at 182.130 kb on + strand, within yaiA at 182.130 kb on + strand, within yaiA at 182.130 kb on + strand, within yaiA at 182.130 kb on + strand, within yaiA at 182.130 kb on + strand, within yaiA at 182.131 kb on - strand, within yaiA at 182.131 kb on - strand, within yaiA at 182.131 kb on - strand, within yaiA at 182.131 kb on - strand, within yaiA at 182.194 kb on + strand at 182.195 kb on - strand at 182.198 kb on + strand at 182.198 kb on + strand at 182.198 kb on + strand at 182.198 kb on + strand at 182.198 kb on + strand at 182.198 kb on + strand at 182.199 kb on - strand at 182.200 kb on + strand at 182.201 kb on - strand at 182.291 kb on + strand, within aroL at 182.292 kb on - strand, within aroL at 182.294 kb on + strand, within aroL at 182.295 kb on - strand, within aroL at 182.427 kb on + strand, within aroL at 182.468 kb on + strand, within aroL at 182.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 180,048 + -0.9 180,113 + +0.1 180,114 - -0.5 180,114 - -0.0 180,114 - +1.0 180,155 - ykiD HEPCGN_07215 0.46 -0.7 180,158 - ykiD HEPCGN_07215 0.50 +0.3 180,167 - ykiD HEPCGN_07215 0.61 -1.2 180,167 - ykiD HEPCGN_07215 0.61 -0.5 180,167 - ykiD HEPCGN_07215 0.61 -0.3 180,173 + ykiD HEPCGN_07215 0.68 -0.3 180,420 + HEPCGN_07220 0.12 +0.5 180,420 + HEPCGN_07220 0.12 -0.5 180,421 - HEPCGN_07220 0.12 -0.1 180,421 - HEPCGN_07220 0.12 +0.4 180,580 + +0.4 180,580 + -0.1 180,581 - -0.4 180,615 + -0.4 180,619 - -0.3 180,684 - -0.5 180,701 + +1.9 180,863 + ppnP HEPCGN_07225 0.64 -1.0 180,879 + ppnP HEPCGN_07225 0.69 -0.6 180,880 - ppnP HEPCGN_07225 0.69 -0.1 180,926 + ppnP HEPCGN_07225 0.86 +0.4 180,947 + +0.0 180,997 - +0.4 181,048 - -1.0 181,048 - -0.1 181,075 - -0.7 181,245 + aroM HEPCGN_07230 0.31 -0.7 181,246 - aroM HEPCGN_07230 0.31 -0.3 181,341 - aroM HEPCGN_07230 0.45 -0.1 181,388 + aroM HEPCGN_07230 0.52 +0.2 181,389 - aroM HEPCGN_07230 0.52 +0.1 181,391 + aroM HEPCGN_07230 0.52 +0.6 181,406 + aroM HEPCGN_07230 0.54 +0.8 181,407 - aroM HEPCGN_07230 0.54 -0.9 181,409 + aroM HEPCGN_07230 0.55 +0.4 181,410 - aroM HEPCGN_07230 0.55 -1.5 181,422 - aroM HEPCGN_07230 0.57 +0.0 181,429 - aroM HEPCGN_07230 0.58 +0.0 181,432 - aroM HEPCGN_07230 0.58 +1.0 181,432 - aroM HEPCGN_07230 0.58 -0.6 181,434 - aroM HEPCGN_07230 0.58 +0.6 181,496 + aroM HEPCGN_07230 0.68 -0.1 181,530 + aroM HEPCGN_07230 0.73 +0.5 181,531 - aroM HEPCGN_07230 0.73 +1.5 181,597 - aroM HEPCGN_07230 0.82 -0.6 181,628 + aroM HEPCGN_07230 0.87 -1.0 181,642 + aroM HEPCGN_07230 0.89 -0.1 181,674 - +0.4 181,677 + +0.2 181,729 + +0.0 181,784 + -0.2 181,784 + +0.1 181,794 - +0.5 181,812 - +0.4 181,812 - +0.3 182,126 + yaiA HEPCGN_07235 0.80 +0.2 182,127 - yaiA HEPCGN_07235 0.80 +0.4 182,127 - yaiA HEPCGN_07235 0.80 +0.1 182,128 + yaiA HEPCGN_07235 0.81 -0.2 182,128 + yaiA HEPCGN_07235 0.81 +0.5 182,128 + yaiA HEPCGN_07235 0.81 +0.5 182,129 - yaiA HEPCGN_07235 0.81 +1.8 182,129 - yaiA HEPCGN_07235 0.81 +0.2 182,129 - yaiA HEPCGN_07235 0.81 -0.4 182,130 + yaiA HEPCGN_07235 0.82 +0.5 182,130 + yaiA HEPCGN_07235 0.82 +0.0 182,130 + yaiA HEPCGN_07235 0.82 +2.2 182,130 + yaiA HEPCGN_07235 0.82 +0.3 182,130 + yaiA HEPCGN_07235 0.82 +0.1 182,130 + yaiA HEPCGN_07235 0.82 +0.4 182,131 - yaiA HEPCGN_07235 0.82 +0.3 182,131 - yaiA HEPCGN_07235 0.82 -0.3 182,131 - yaiA HEPCGN_07235 0.82 +0.1 182,131 - yaiA HEPCGN_07235 0.82 +0.9 182,194 + -1.0 182,195 - +0.3 182,198 + +0.3 182,198 + +0.2 182,198 + -0.2 182,198 + -0.7 182,198 + -0.6 182,198 + -0.2 182,199 - +0.2 182,200 + +0.2 182,201 - -0.1 182,291 + aroL HEPCGN_07240 0.15 +0.2 182,292 - aroL HEPCGN_07240 0.15 -1.2 182,294 + aroL HEPCGN_07240 0.15 +1.7 182,295 - aroL HEPCGN_07240 0.15 +0.5 182,427 + aroL HEPCGN_07240 0.41 +0.3 182,468 + aroL HEPCGN_07240 0.48 +0.3 182,697 - +0.8
Or see this region's nucleotide sequence