Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fetB and fetA overlap by 14 nucleotides fetA and qmcA are separated by 145 nucleotides qmcA and ybbJ overlap by 4 nucleotides ybbJ and HEPCGN_06645 are separated by 102 nucleotides
HEPCGN_06625: fetB - iron export ABC transporter permease subunit FetB, at 40,484 to 41,263
fetB
HEPCGN_06630: fetA - iron ABC transporter ATP-binding protein FetA, at 41,250 to 41,927
fetA
HEPCGN_06635: qmcA - Protein QmcA, at 42,073 to 42,990
qmcA
HEPCGN_06640: ybbJ - Inner membrane protein YbbJ, at 42,987 to 43,445
ybbJ
HEPCGN_06645: HEPCGN_06645 - hypothetical protein, at 43,548 to 43,910
_06645
Position (kb) 42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 41.249 kb on - strand at 41.325 kb on - strand, within fetA at 41.381 kb on - strand, within fetA at 41.415 kb on - strand, within fetA at 41.636 kb on - strand, within fetA at 41.675 kb on - strand, within fetA at 41.692 kb on + strand, within fetA at 41.817 kb on + strand, within fetA at 41.817 kb on + strand, within fetA at 41.855 kb on + strand, within fetA at 42.090 kb on + strand at 42.206 kb on + strand, within qmcA at 42.415 kb on - strand, within qmcA at 42.496 kb on - strand, within qmcA at 42.577 kb on - strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.626 kb on - strand, within qmcA at 42.731 kb on + strand, within qmcA at 42.732 kb on - strand, within qmcA at 42.814 kb on - strand, within qmcA at 42.814 kb on - strand, within qmcA at 42.814 kb on - strand, within qmcA at 42.847 kb on + strand, within qmcA at 42.848 kb on - strand, within qmcA at 42.848 kb on - strand, within qmcA at 42.860 kb on + strand, within qmcA at 42.861 kb on - strand, within qmcA at 43.017 kb on - strand at 43.078 kb on - strand, within ybbJ at 43.383 kb on - strand, within ybbJ at 43.464 kb on + strand at 43.464 kb on + strand at 43.473 kb on + strand at 43.480 kb on + strand at 43.550 kb on - strand at 43.645 kb on + strand, within HEPCGN_06645 at 43.646 kb on - strand, within HEPCGN_06645 at 43.681 kb on + strand, within HEPCGN_06645 at 43.799 kb on + strand, within HEPCGN_06645 at 43.812 kb on + strand, within HEPCGN_06645 at 43.812 kb on + strand, within HEPCGN_06645 at 43.858 kb on - strand, within HEPCGN_06645 at 43.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 41,249 - -1.4 41,325 - fetA HEPCGN_06630 0.11 -0.2 41,381 - fetA HEPCGN_06630 0.19 -0.5 41,415 - fetA HEPCGN_06630 0.24 +0.2 41,636 - fetA HEPCGN_06630 0.57 -0.2 41,675 - fetA HEPCGN_06630 0.63 -1.0 41,692 + fetA HEPCGN_06630 0.65 -0.2 41,817 + fetA HEPCGN_06630 0.84 -1.7 41,817 + fetA HEPCGN_06630 0.84 -0.3 41,855 + fetA HEPCGN_06630 0.89 -2.7 42,090 + -0.1 42,206 + qmcA HEPCGN_06635 0.14 -0.1 42,415 - qmcA HEPCGN_06635 0.37 +0.2 42,496 - qmcA HEPCGN_06635 0.46 -0.1 42,577 - qmcA HEPCGN_06635 0.55 +0.1 42,625 + qmcA HEPCGN_06635 0.60 +0.0 42,625 + qmcA HEPCGN_06635 0.60 +0.7 42,625 + qmcA HEPCGN_06635 0.60 +0.4 42,625 + qmcA HEPCGN_06635 0.60 +0.9 42,626 - qmcA HEPCGN_06635 0.60 +0.4 42,731 + qmcA HEPCGN_06635 0.72 +0.5 42,732 - qmcA HEPCGN_06635 0.72 -0.2 42,814 - qmcA HEPCGN_06635 0.81 -0.2 42,814 - qmcA HEPCGN_06635 0.81 -0.9 42,814 - qmcA HEPCGN_06635 0.81 -2.0 42,847 + qmcA HEPCGN_06635 0.84 +0.1 42,848 - qmcA HEPCGN_06635 0.84 +0.3 42,848 - qmcA HEPCGN_06635 0.84 +0.0 42,860 + qmcA HEPCGN_06635 0.86 +0.2 42,861 - qmcA HEPCGN_06635 0.86 +0.6 43,017 - -1.0 43,078 - ybbJ HEPCGN_06640 0.20 +0.6 43,383 - ybbJ HEPCGN_06640 0.86 -1.9 43,464 + +0.0 43,464 + +0.2 43,473 + +0.3 43,480 + -0.3 43,550 - -0.1 43,645 + HEPCGN_06645 0.27 -0.1 43,646 - HEPCGN_06645 0.27 +0.2 43,681 + HEPCGN_06645 0.37 +0.8 43,799 + HEPCGN_06645 0.69 +1.2 43,812 + HEPCGN_06645 0.73 -1.1 43,812 + HEPCGN_06645 0.73 +0.1 43,858 - HEPCGN_06645 0.85 +0.5 43,940 - -1.5
Or see this region's nucleotide sequence