Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tesA and ybbO are separated by 28 nucleotides ybbO and cnoX are separated by 60 nucleotides cnoX and fetB are separated by 179 nucleotides fetB and fetA overlap by 14 nucleotides
HEPCGN_06605: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 38,054 to 38,590
tesA
HEPCGN_06610: ybbO - NADP(+)-dependent aldehyde reductase, at 38,619 to 39,389
ybbO
HEPCGN_06615: cnoX - chaperedoxin, at 39,450 to 40,304
cnoX
HEPCGN_06625: fetB - iron export ABC transporter permease subunit FetB, at 40,484 to 41,263
fetB
HEPCGN_06630: fetA - iron ABC transporter ATP-binding protein FetA, at 41,250 to 41,927
fetA
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 38.475 kb on - strand, within tesA at 38.536 kb on + strand, within tesA at 38.575 kb on - strand at 38.612 kb on + strand at 38.635 kb on + strand at 38.635 kb on + strand at 38.636 kb on - strand at 38.856 kb on - strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.878 kb on - strand, within ybbO at 38.878 kb on - strand, within ybbO at 38.878 kb on - strand, within ybbO at 38.878 kb on - strand, within ybbO at 39.000 kb on - strand, within ybbO at 39.066 kb on - strand, within ybbO at 39.109 kb on + strand, within ybbO at 39.110 kb on - strand, within ybbO at 39.110 kb on - strand, within ybbO at 39.125 kb on + strand, within ybbO at 39.158 kb on + strand, within ybbO at 39.197 kb on + strand, within ybbO at 39.198 kb on - strand, within ybbO at 39.278 kb on + strand, within ybbO at 39.341 kb on + strand at 39.572 kb on - strand, within cnoX at 39.694 kb on - strand, within cnoX at 39.694 kb on - strand, within cnoX at 39.837 kb on + strand, within cnoX at 39.837 kb on + strand, within cnoX at 39.837 kb on + strand, within cnoX at 40.215 kb on - strand, within cnoX at 40.215 kb on - strand, within cnoX at 40.300 kb on - strand at 40.336 kb on - strand at 40.454 kb on + strand at 40.455 kb on - strand at 40.485 kb on + strand at 40.537 kb on + strand at 40.538 kb on - strand at 40.548 kb on - strand at 40.552 kb on - strand at 40.561 kb on + strand at 40.595 kb on - strand, within fetB at 40.595 kb on - strand, within fetB at 40.618 kb on + strand, within fetB at 40.618 kb on + strand, within fetB at 40.619 kb on - strand, within fetB at 40.649 kb on + strand, within fetB at 40.839 kb on + strand, within fetB at 40.948 kb on + strand, within fetB at 40.966 kb on + strand, within fetB at 40.967 kb on - strand, within fetB at 41.047 kb on + strand, within fetB at 41.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 38,475 - tesA HEPCGN_06605 0.78 +0.6 38,536 + tesA HEPCGN_06605 0.90 +0.4 38,575 - +0.5 38,612 + +0.2 38,635 + +0.1 38,635 + +1.1 38,636 - -0.7 38,856 - ybbO HEPCGN_06610 0.31 +0.6 38,877 + ybbO HEPCGN_06610 0.33 +0.4 38,877 + ybbO HEPCGN_06610 0.33 +0.1 38,877 + ybbO HEPCGN_06610 0.33 +0.1 38,877 + ybbO HEPCGN_06610 0.33 +0.4 38,877 + ybbO HEPCGN_06610 0.33 +0.3 38,878 - ybbO HEPCGN_06610 0.34 +0.8 38,878 - ybbO HEPCGN_06610 0.34 +1.2 38,878 - ybbO HEPCGN_06610 0.34 +0.5 38,878 - ybbO HEPCGN_06610 0.34 -0.7 39,000 - ybbO HEPCGN_06610 0.49 +0.4 39,066 - ybbO HEPCGN_06610 0.58 -0.4 39,109 + ybbO HEPCGN_06610 0.64 +0.5 39,110 - ybbO HEPCGN_06610 0.64 +0.3 39,110 - ybbO HEPCGN_06610 0.64 +0.4 39,125 + ybbO HEPCGN_06610 0.66 +0.2 39,158 + ybbO HEPCGN_06610 0.70 -0.2 39,197 + ybbO HEPCGN_06610 0.75 -0.3 39,198 - ybbO HEPCGN_06610 0.75 +0.7 39,278 + ybbO HEPCGN_06610 0.85 +0.1 39,341 + +1.2 39,572 - cnoX HEPCGN_06615 0.14 -0.1 39,694 - cnoX HEPCGN_06615 0.29 -0.4 39,694 - cnoX HEPCGN_06615 0.29 +0.6 39,837 + cnoX HEPCGN_06615 0.45 +0.4 39,837 + cnoX HEPCGN_06615 0.45 +1.2 39,837 + cnoX HEPCGN_06615 0.45 -0.6 40,215 - cnoX HEPCGN_06615 0.89 +0.1 40,215 - cnoX HEPCGN_06615 0.89 -0.2 40,300 - +0.8 40,336 - -1.9 40,454 + -1.3 40,455 - +0.1 40,485 + +0.1 40,537 + -0.3 40,538 - +0.6 40,548 - +0.7 40,552 - +0.3 40,561 + -0.1 40,595 - fetB HEPCGN_06625 0.14 +0.5 40,595 - fetB HEPCGN_06625 0.14 -0.2 40,618 + fetB HEPCGN_06625 0.17 +0.5 40,618 + fetB HEPCGN_06625 0.17 +0.1 40,619 - fetB HEPCGN_06625 0.17 -0.3 40,649 + fetB HEPCGN_06625 0.21 -1.2 40,839 + fetB HEPCGN_06625 0.46 +0.6 40,948 + fetB HEPCGN_06625 0.59 -0.5 40,966 + fetB HEPCGN_06625 0.62 -0.5 40,967 - fetB HEPCGN_06625 0.62 +0.3 41,047 + fetB HEPCGN_06625 0.72 +1.1 41,249 - -1.4
Or see this region's nucleotide sequence