Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04560 and cheR are separated by 125 nucleotides cheR and cheB are separated by 2 nucleotides cheB and cheY are separated by 14 nucleotides cheY and cheZ are separated by 10 nucleotides
HEPCGN_04560: HEPCGN_04560 - Dipeptide chemoreceptor protein, at 794,180 to 794,299
_04560
HEPCGN_04565: cheR - protein-glutamate O-methyltransferase CheR, at 794,425 to 795,285
cheR
HEPCGN_04570: cheB - protein-glutamate methylesterase/protein glutamine deamidase, at 795,288 to 796,337
cheB
HEPCGN_04575: cheY - chemotaxis regulatory protein CheY, at 796,352 to 796,741
cheY
HEPCGN_04580: cheZ - protein phosphatase CheZ, at 796,752 to 797,396
cheZ
Position (kb) 795
796
797 Strain fitness (log2 ratio) -1
0
1 at 794.334 kb on - strand at 794.382 kb on - strand at 794.459 kb on + strand at 794.559 kb on + strand, within cheR at 794.575 kb on + strand, within cheR at 794.629 kb on + strand, within cheR at 794.822 kb on + strand, within cheR at 794.841 kb on + strand, within cheR at 794.841 kb on + strand, within cheR at 794.842 kb on - strand, within cheR at 794.922 kb on + strand, within cheR at 795.038 kb on - strand, within cheR at 795.127 kb on + strand, within cheR at 795.181 kb on - strand, within cheR at 795.307 kb on + strand at 795.701 kb on + strand, within cheB at 795.701 kb on + strand, within cheB at 795.808 kb on + strand, within cheB at 795.844 kb on + strand, within cheB at 795.857 kb on + strand, within cheB at 795.858 kb on - strand, within cheB at 795.900 kb on - strand, within cheB at 795.964 kb on - strand, within cheB at 795.964 kb on - strand, within cheB at 795.964 kb on - strand, within cheB at 795.964 kb on - strand, within cheB at 795.964 kb on - strand, within cheB at 796.002 kb on - strand, within cheB at 796.015 kb on - strand, within cheB at 796.483 kb on + strand, within cheY at 796.602 kb on + strand, within cheY at 796.603 kb on - strand, within cheY at 796.603 kb on - strand, within cheY at 796.667 kb on + strand, within cheY at 796.917 kb on + strand, within cheZ at 796.918 kb on - strand, within cheZ at 796.918 kb on - strand, within cheZ at 796.918 kb on - strand, within cheZ at 796.918 kb on - strand, within cheZ at 796.920 kb on + strand, within cheZ at 796.920 kb on + strand, within cheZ at 796.921 kb on - strand, within cheZ at 797.132 kb on + strand, within cheZ at 797.133 kb on - strand, within cheZ at 797.133 kb on - strand, within cheZ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 794,334 - +0.8 794,382 - -1.0 794,459 + -0.2 794,559 + cheR HEPCGN_04565 0.16 +0.2 794,575 + cheR HEPCGN_04565 0.17 -1.1 794,629 + cheR HEPCGN_04565 0.24 +0.5 794,822 + cheR HEPCGN_04565 0.46 -0.2 794,841 + cheR HEPCGN_04565 0.48 +0.1 794,841 + cheR HEPCGN_04565 0.48 -0.5 794,842 - cheR HEPCGN_04565 0.48 -1.7 794,922 + cheR HEPCGN_04565 0.58 +0.4 795,038 - cheR HEPCGN_04565 0.71 +1.2 795,127 + cheR HEPCGN_04565 0.82 -0.3 795,181 - cheR HEPCGN_04565 0.88 +0.4 795,307 + -0.0 795,701 + cheB HEPCGN_04570 0.39 +0.2 795,701 + cheB HEPCGN_04570 0.39 -0.5 795,808 + cheB HEPCGN_04570 0.50 -0.4 795,844 + cheB HEPCGN_04570 0.53 -0.2 795,857 + cheB HEPCGN_04570 0.54 +0.6 795,858 - cheB HEPCGN_04570 0.54 +0.5 795,900 - cheB HEPCGN_04570 0.58 -0.9 795,964 - cheB HEPCGN_04570 0.64 -1.0 795,964 - cheB HEPCGN_04570 0.64 -0.2 795,964 - cheB HEPCGN_04570 0.64 -0.3 795,964 - cheB HEPCGN_04570 0.64 +0.6 795,964 - cheB HEPCGN_04570 0.64 -0.7 796,002 - cheB HEPCGN_04570 0.68 +0.5 796,015 - cheB HEPCGN_04570 0.69 -0.2 796,483 + cheY HEPCGN_04575 0.34 -0.4 796,602 + cheY HEPCGN_04575 0.64 -0.2 796,603 - cheY HEPCGN_04575 0.64 +0.1 796,603 - cheY HEPCGN_04575 0.64 +0.3 796,667 + cheY HEPCGN_04575 0.81 -0.1 796,917 + cheZ HEPCGN_04580 0.26 -0.7 796,918 - cheZ HEPCGN_04580 0.26 -0.2 796,918 - cheZ HEPCGN_04580 0.26 -0.1 796,918 - cheZ HEPCGN_04580 0.26 -1.2 796,918 - cheZ HEPCGN_04580 0.26 -0.6 796,920 + cheZ HEPCGN_04580 0.26 -0.6 796,920 + cheZ HEPCGN_04580 0.26 -0.5 796,921 - cheZ HEPCGN_04580 0.26 +0.3 797,132 + cheZ HEPCGN_04580 0.59 -0.3 797,133 - cheZ HEPCGN_04580 0.59 -0.1 797,133 - cheZ HEPCGN_04580 0.59 -0.2
Or see this region's nucleotide sequence