Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt apbC and yehE are separated by 262 nucleotides yehE and yehD are separated by 295 nucleotides yehD and yehC are separated by 80 nucleotides yehC and yehB are separated by 15 nucleotides
HEPCGN_02710: apbC - iron-sulfur cluster carrier protein ApbC, at 452,565 to 453,674
apbC
HEPCGN_02715: yehE - Uncharacterized protein YehE, at 453,937 to 454,218
yehE
HEPCGN_02720: yehD - Uncharacterized fimbrial-like protein YehD, at 454,514 to 455,056
yehD
HEPCGN_02725: yehC - putative fimbrial chaperone YehC, at 455,137 to 455,811
yehC
HEPCGN_02730: yehB - Outer membrane usher protein YehB, at 455,827 to 458,307
yehB
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1 at 453.521 kb on - strand, within apbC at 453.585 kb on - strand at 453.588 kb on + strand at 453.589 kb on - strand at 453.679 kb on + strand at 453.680 kb on - strand at 453.680 kb on - strand at 453.682 kb on + strand at 453.720 kb on + strand at 453.720 kb on + strand at 453.720 kb on + strand at 453.721 kb on - strand at 453.721 kb on - strand at 453.736 kb on - strand at 453.808 kb on - strand at 453.872 kb on - strand at 453.872 kb on - strand at 453.877 kb on + strand at 453.878 kb on - strand at 453.878 kb on - strand at 453.879 kb on + strand at 453.880 kb on - strand at 453.901 kb on - strand at 453.918 kb on - strand at 453.918 kb on - strand at 453.942 kb on + strand at 453.943 kb on - strand at 453.943 kb on - strand at 454.056 kb on + strand, within yehE at 454.056 kb on + strand, within yehE at 454.057 kb on - strand, within yehE at 454.105 kb on + strand, within yehE at 454.176 kb on + strand, within yehE at 454.371 kb on + strand at 454.514 kb on - strand at 454.706 kb on - strand, within yehD at 454.724 kb on + strand, within yehD at 455.134 kb on - strand at 455.311 kb on - strand, within yehC at 455.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 453,521 - apbC HEPCGN_02710 0.86 -0.0 453,585 - -0.5 453,588 + -0.2 453,589 - -0.0 453,679 + +0.7 453,680 - -0.2 453,680 - -2.7 453,682 + +0.2 453,720 + -0.7 453,720 + +1.3 453,720 + -0.2 453,721 - +0.2 453,721 - +0.3 453,736 - +0.1 453,808 - +0.2 453,872 - -0.3 453,872 - +0.6 453,877 + -0.3 453,878 - -0.2 453,878 - +0.2 453,879 + -1.2 453,880 - +1.1 453,901 - +0.9 453,918 - +0.5 453,918 - -0.4 453,942 + -0.5 453,943 - -0.6 453,943 - +0.1 454,056 + yehE HEPCGN_02715 0.42 -0.4 454,056 + yehE HEPCGN_02715 0.42 -0.1 454,057 - yehE HEPCGN_02715 0.43 +0.2 454,105 + yehE HEPCGN_02715 0.60 +0.1 454,176 + yehE HEPCGN_02715 0.85 +1.4 454,371 + -0.0 454,514 - -1.0 454,706 - yehD HEPCGN_02720 0.35 +0.0 454,724 + yehD HEPCGN_02720 0.39 -1.4 455,134 - -0.0 455,311 - yehC HEPCGN_02725 0.26 +0.5 455,888 - +0.5
Or see this region's nucleotide sequence