Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02700 and metG are separated by 140 nucleotides metG and apbC are separated by 131 nucleotides
HEPCGN_02700: HEPCGN_02700 - molybdate metabolism regulator, at 446,453 to 450,259
_02700
HEPCGN_02705: metG - methionine--tRNA ligase, at 450,400 to 452,433
metG
HEPCGN_02710: apbC - iron-sulfur cluster carrier protein ApbC, at 452,565 to 453,674
apbC
Position (kb) 450
451
452
453 Strain fitness (log2 ratio) -2
-1
0
1 at 449.468 kb on - strand, within HEPCGN_02700 at 449.471 kb on + strand, within HEPCGN_02700 at 449.472 kb on - strand, within HEPCGN_02700 at 449.520 kb on - strand, within HEPCGN_02700 at 449.520 kb on - strand, within HEPCGN_02700 at 449.599 kb on + strand, within HEPCGN_02700 at 449.599 kb on + strand, within HEPCGN_02700 at 449.601 kb on + strand, within HEPCGN_02700 at 449.601 kb on + strand, within HEPCGN_02700 at 449.602 kb on - strand, within HEPCGN_02700 at 449.663 kb on + strand, within HEPCGN_02700 at 449.664 kb on - strand, within HEPCGN_02700 at 449.686 kb on + strand, within HEPCGN_02700 at 449.703 kb on - strand, within HEPCGN_02700 at 449.771 kb on + strand, within HEPCGN_02700 at 449.846 kb on - strand, within HEPCGN_02700 at 449.864 kb on + strand, within HEPCGN_02700 at 449.865 kb on - strand, within HEPCGN_02700 at 449.995 kb on + strand at 450.041 kb on - strand at 450.069 kb on + strand at 450.070 kb on - strand at 450.070 kb on - strand at 450.100 kb on + strand at 450.184 kb on + strand at 450.184 kb on + strand at 450.185 kb on - strand at 450.185 kb on - strand at 450.309 kb on + strand at 450.360 kb on + strand at 450.760 kb on - strand, within metG at 452.468 kb on - strand at 452.497 kb on - strand at 452.500 kb on + strand at 452.509 kb on - strand at 452.521 kb on + strand at 452.527 kb on - strand at 452.542 kb on - strand at 452.727 kb on - strand, within apbC at 452.774 kb on + strand, within apbC at 453.284 kb on - strand, within apbC at 453.284 kb on - strand, within apbC at 453.408 kb on - strand, within apbC at 453.416 kb on + strand, within apbC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 449,468 - HEPCGN_02700 0.79 +0.2 449,471 + HEPCGN_02700 0.79 -0.2 449,472 - HEPCGN_02700 0.79 -1.0 449,520 - HEPCGN_02700 0.81 +0.3 449,520 - HEPCGN_02700 0.81 +0.5 449,599 + HEPCGN_02700 0.83 +0.8 449,599 + HEPCGN_02700 0.83 -0.3 449,601 + HEPCGN_02700 0.83 +0.8 449,601 + HEPCGN_02700 0.83 -0.3 449,602 - HEPCGN_02700 0.83 -0.3 449,663 + HEPCGN_02700 0.84 +0.3 449,664 - HEPCGN_02700 0.84 +0.0 449,686 + HEPCGN_02700 0.85 +0.0 449,703 - HEPCGN_02700 0.85 +0.6 449,771 + HEPCGN_02700 0.87 -0.7 449,846 - HEPCGN_02700 0.89 +0.1 449,864 + HEPCGN_02700 0.90 +0.2 449,865 - HEPCGN_02700 0.90 +0.4 449,995 + -0.3 450,041 - +0.8 450,069 + +0.0 450,070 - -0.3 450,070 - -0.3 450,100 + +0.8 450,184 + -2.0 450,184 + -1.1 450,185 - +0.4 450,185 - -0.2 450,309 + -0.2 450,360 + -0.3 450,760 - metG HEPCGN_02705 0.18 +0.3 452,468 - -2.6 452,497 - -0.2 452,500 + -0.3 452,509 - +0.1 452,521 + +0.2 452,527 - +1.2 452,542 - +0.5 452,727 - apbC HEPCGN_02710 0.15 +0.2 452,774 + apbC HEPCGN_02710 0.19 +0.5 453,284 - apbC HEPCGN_02710 0.65 -0.1 453,284 - apbC HEPCGN_02710 0.65 -0.6 453,408 - apbC HEPCGN_02710 0.76 -0.6 453,416 + apbC HEPCGN_02710 0.77 -0.1
Or see this region's nucleotide sequence