Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00465

Experiment: Bas39

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00455 and yjdB are separated by 7 nucleotidesyjdB and HEPCGN_00465 are separated by 15 nucleotidesHEPCGN_00465 and HEPCGN_00470 overlap by 19 nucleotidesHEPCGN_00470 and HEPCGN_00475 overlap by 32 nucleotides HEPCGN_00455: HEPCGN_00455 - phage tail protein, at 13,553 to 13,948 _00455 HEPCGN_00460: yjdB - phage tail protein, at 13,956 to 14,696 yjdB HEPCGN_00465: HEPCGN_00465 - phage minor tail protein G, at 14,712 to 15,134 _00465 HEPCGN_00470: HEPCGN_00470 - phage tail assembly protein T, at 15,116 to 15,574 _00470 HEPCGN_00475: HEPCGN_00475 - Phage-related minor tail protein, at 15,543 to 18,089 _00475 Position (kb) 14 15 16Strain fitness (log2 ratio) -1 0 1at 14.034 kb on + strand, within yjdBat 15.752 kb on + strandat 16.040 kb on + strand, within HEPCGN_00475at 16.040 kb on + strand, within HEPCGN_00475at 16.040 kb on + strand, within HEPCGN_00475

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas39
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14,034 + yjdB HEPCGN_00460 0.11 -0.3
15,752 + -0.1
16,040 + HEPCGN_00475 0.20 +0.0
16,040 + HEPCGN_00475 0.20 +0.0
16,040 + HEPCGN_00475 0.20 +0.7

Or see this region's nucleotide sequence