Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15870

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15865 and A4249_RS15870 are separated by 57 nucleotidesA4249_RS15870 and A4249_RS15875 are separated by 5 nucleotidesA4249_RS15875 and A4249_RS15880 overlap by 4 nucleotides A4249_RS15865: A4249_RS15865 - Holliday junction branch migration DNA helicase RuvB, at 3,203,639 to 3,204,670 _RS15865 A4249_RS15870: A4249_RS15870 - alpha/beta fold hydrolase, at 3,204,728 to 3,206,194 _RS15870 A4249_RS15875: A4249_RS15875 - hypothetical protein, at 3,206,200 to 3,206,568 _RS15875 A4249_RS15880: A4249_RS15880 - hypothetical protein, at 3,206,565 to 3,207,428 _RS15880 Position (kb) 3204 3205 3206 3207Strain fitness (log2 ratio) -2 -1 0 1 2at 3204.130 kb on + strand, within A4249_RS15865at 3204.177 kb on - strand, within A4249_RS15865at 3204.177 kb on - strand, within A4249_RS15865at 3204.452 kb on + strand, within A4249_RS15865at 3204.452 kb on + strand, within A4249_RS15865at 3204.453 kb on - strand, within A4249_RS15865at 3204.600 kb on - strandat 3204.600 kb on - strandat 3204.668 kb on + strandat 3204.668 kb on + strandat 3204.669 kb on - strandat 3204.669 kb on - strandat 3204.937 kb on + strand, within A4249_RS15870at 3204.937 kb on + strand, within A4249_RS15870at 3204.937 kb on + strand, within A4249_RS15870at 3204.938 kb on - strand, within A4249_RS15870at 3204.959 kb on + strand, within A4249_RS15870at 3204.959 kb on + strand, within A4249_RS15870at 3204.959 kb on + strand, within A4249_RS15870at 3204.960 kb on - strand, within A4249_RS15870at 3205.226 kb on + strand, within A4249_RS15870at 3205.226 kb on + strand, within A4249_RS15870at 3205.256 kb on + strand, within A4249_RS15870at 3205.256 kb on + strand, within A4249_RS15870at 3205.340 kb on + strand, within A4249_RS15870at 3205.341 kb on - strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.645 kb on + strand, within A4249_RS15870at 3205.646 kb on - strand, within A4249_RS15870at 3205.739 kb on + strand, within A4249_RS15870at 3205.739 kb on + strand, within A4249_RS15870at 3205.739 kb on + strand, within A4249_RS15870at 3205.740 kb on - strand, within A4249_RS15870at 3205.740 kb on - strand, within A4249_RS15870at 3205.742 kb on + strand, within A4249_RS15870at 3205.742 kb on + strand, within A4249_RS15870at 3206.015 kb on + strand, within A4249_RS15870at 3206.015 kb on + strand, within A4249_RS15870at 3206.034 kb on + strand, within A4249_RS15870at 3206.035 kb on - strand, within A4249_RS15870at 3206.527 kb on + strand, within A4249_RS15875at 3206.527 kb on + strand, within A4249_RS15875at 3206.527 kb on + strand, within A4249_RS15875at 3206.527 kb on + strand, within A4249_RS15875at 3206.528 kb on - strand, within A4249_RS15875at 3206.597 kb on - strandat 3206.597 kb on - strandat 3206.597 kb on - strandat 3206.597 kb on - strandat 3206.864 kb on + strand, within A4249_RS15880at 3206.864 kb on + strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3207.135 kb on + strand, within A4249_RS15880at 3207.135 kb on + strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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3,204,130 + A4249_RS15865 0.48 +0.3
3,204,177 - A4249_RS15865 0.52 -0.8
3,204,177 - A4249_RS15865 0.52 +0.0
3,204,452 + A4249_RS15865 0.79 +0.0
3,204,452 + A4249_RS15865 0.79 +1.6
3,204,453 - A4249_RS15865 0.79 +0.2
3,204,600 - +1.2
3,204,600 - -0.8
3,204,668 + +0.7
3,204,668 + -0.5
3,204,669 - -0.7
3,204,669 - -0.0
3,204,937 + A4249_RS15870 0.14 +0.4
3,204,937 + A4249_RS15870 0.14 -1.4
3,204,937 + A4249_RS15870 0.14 -1.1
3,204,938 - A4249_RS15870 0.14 +0.0
3,204,959 + A4249_RS15870 0.16 -0.4
3,204,959 + A4249_RS15870 0.16 -0.8
3,204,959 + A4249_RS15870 0.16 +0.1
3,204,960 - A4249_RS15870 0.16 +0.5
3,205,226 + A4249_RS15870 0.34 -0.4
3,205,226 + A4249_RS15870 0.34 +0.5
3,205,256 + A4249_RS15870 0.36 +0.0
3,205,256 + A4249_RS15870 0.36 +0.4
3,205,340 + A4249_RS15870 0.42 -0.5
3,205,341 - A4249_RS15870 0.42 +0.4
3,205,643 + A4249_RS15870 0.62 +1.1
3,205,643 + A4249_RS15870 0.62 +0.7
3,205,643 + A4249_RS15870 0.62 +0.4
3,205,644 - A4249_RS15870 0.62 -0.1
3,205,644 - A4249_RS15870 0.62 -0.6
3,205,644 - A4249_RS15870 0.62 -0.5
3,205,644 - A4249_RS15870 0.62 -1.6
3,205,644 - A4249_RS15870 0.62 +2.4
3,205,644 - A4249_RS15870 0.62 -0.3
3,205,645 + A4249_RS15870 0.63 +1.2
3,205,646 - A4249_RS15870 0.63 +0.4
3,205,739 + A4249_RS15870 0.69 +0.0
3,205,739 + A4249_RS15870 0.69 +0.1
3,205,739 + A4249_RS15870 0.69 -0.9
3,205,740 - A4249_RS15870 0.69 +0.6
3,205,740 - A4249_RS15870 0.69 -0.2
3,205,742 + A4249_RS15870 0.69 -1.0
3,205,742 + A4249_RS15870 0.69 +2.6
3,206,015 + A4249_RS15870 0.88 -0.3
3,206,015 + A4249_RS15870 0.88 +0.5
3,206,034 + A4249_RS15870 0.89 +0.3
3,206,035 - A4249_RS15870 0.89 -1.4
3,206,527 + A4249_RS15875 0.89 +1.2
3,206,527 + A4249_RS15875 0.89 -0.2
3,206,527 + A4249_RS15875 0.89 -2.1
3,206,527 + A4249_RS15875 0.89 -0.8
3,206,528 - A4249_RS15875 0.89 -0.4
3,206,597 - -0.8
3,206,597 - -0.4
3,206,597 - -0.7
3,206,597 - +0.2
3,206,864 + A4249_RS15880 0.35 -1.4
3,206,864 + A4249_RS15880 0.35 +0.1
3,206,865 - A4249_RS15880 0.35 -0.4
3,206,865 - A4249_RS15880 0.35 -0.4
3,206,865 - A4249_RS15880 0.35 -0.3
3,206,865 - A4249_RS15880 0.35 +0.2
3,206,865 - A4249_RS15880 0.35 -0.4
3,207,135 + A4249_RS15880 0.66 -0.6
3,207,135 + A4249_RS15880 0.66 -0.3
3,207,136 - A4249_RS15880 0.66 -0.3
3,207,136 - A4249_RS15880 0.66 -1.3
3,207,136 - A4249_RS15880 0.66 -1.2
3,207,136 - A4249_RS15880 0.66 +0.3

Or see this region's nucleotide sequence