Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15865 and A4249_RS15870 are separated by 57 nucleotides A4249_RS15870 and A4249_RS15875 are separated by 5 nucleotides A4249_RS15875 and A4249_RS15880 overlap by 4 nucleotides
A4249_RS15865: A4249_RS15865 - Holliday junction branch migration DNA helicase RuvB, at 3,203,639 to 3,204,670
_RS15865
A4249_RS15870: A4249_RS15870 - alpha/beta fold hydrolase, at 3,204,728 to 3,206,194
_RS15870
A4249_RS15875: A4249_RS15875 - hypothetical protein, at 3,206,200 to 3,206,568
_RS15875
A4249_RS15880: A4249_RS15880 - hypothetical protein, at 3,206,565 to 3,207,428
_RS15880
Position (kb)
3204
3205
3206
3207 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3204.130 kb on + strand, within A4249_RS15865 at 3204.177 kb on - strand, within A4249_RS15865 at 3204.177 kb on - strand, within A4249_RS15865 at 3204.452 kb on + strand, within A4249_RS15865 at 3204.452 kb on + strand, within A4249_RS15865 at 3204.453 kb on - strand, within A4249_RS15865 at 3204.600 kb on - strand at 3204.600 kb on - strand at 3204.668 kb on + strand at 3204.668 kb on + strand at 3204.669 kb on - strand at 3204.669 kb on - strand at 3204.937 kb on + strand, within A4249_RS15870 at 3204.937 kb on + strand, within A4249_RS15870 at 3204.937 kb on + strand, within A4249_RS15870 at 3204.938 kb on - strand, within A4249_RS15870 at 3204.959 kb on + strand, within A4249_RS15870 at 3204.959 kb on + strand, within A4249_RS15870 at 3204.959 kb on + strand, within A4249_RS15870 at 3204.960 kb on - strand, within A4249_RS15870 at 3205.226 kb on + strand, within A4249_RS15870 at 3205.226 kb on + strand, within A4249_RS15870 at 3205.256 kb on + strand, within A4249_RS15870 at 3205.256 kb on + strand, within A4249_RS15870 at 3205.340 kb on + strand, within A4249_RS15870 at 3205.341 kb on - strand, within A4249_RS15870 at 3205.643 kb on + strand, within A4249_RS15870 at 3205.643 kb on + strand, within A4249_RS15870 at 3205.643 kb on + strand, within A4249_RS15870 at 3205.644 kb on - strand, within A4249_RS15870 at 3205.644 kb on - strand, within A4249_RS15870 at 3205.644 kb on - strand, within A4249_RS15870 at 3205.644 kb on - strand, within A4249_RS15870 at 3205.644 kb on - strand, within A4249_RS15870 at 3205.644 kb on - strand, within A4249_RS15870 at 3205.645 kb on + strand, within A4249_RS15870 at 3205.646 kb on - strand, within A4249_RS15870 at 3205.739 kb on + strand, within A4249_RS15870 at 3205.739 kb on + strand, within A4249_RS15870 at 3205.739 kb on + strand, within A4249_RS15870 at 3205.740 kb on - strand, within A4249_RS15870 at 3205.740 kb on - strand, within A4249_RS15870 at 3205.742 kb on + strand, within A4249_RS15870 at 3205.742 kb on + strand, within A4249_RS15870 at 3206.015 kb on + strand, within A4249_RS15870 at 3206.015 kb on + strand, within A4249_RS15870 at 3206.034 kb on + strand, within A4249_RS15870 at 3206.035 kb on - strand, within A4249_RS15870 at 3206.527 kb on + strand, within A4249_RS15875 at 3206.527 kb on + strand, within A4249_RS15875 at 3206.527 kb on + strand, within A4249_RS15875 at 3206.527 kb on + strand, within A4249_RS15875 at 3206.528 kb on - strand, within A4249_RS15875 at 3206.597 kb on - strand at 3206.597 kb on - strand at 3206.597 kb on - strand at 3206.597 kb on - strand at 3206.864 kb on + strand, within A4249_RS15880 at 3206.864 kb on + strand, within A4249_RS15880 at 3206.865 kb on - strand, within A4249_RS15880 at 3206.865 kb on - strand, within A4249_RS15880 at 3206.865 kb on - strand, within A4249_RS15880 at 3206.865 kb on - strand, within A4249_RS15880 at 3206.865 kb on - strand, within A4249_RS15880 at 3207.135 kb on + strand, within A4249_RS15880 at 3207.135 kb on + strand, within A4249_RS15880 at 3207.136 kb on - strand, within A4249_RS15880 at 3207.136 kb on - strand, within A4249_RS15880 at 3207.136 kb on - strand, within A4249_RS15880 at 3207.136 kb on - strand, within A4249_RS15880
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 3,204,130 + A4249_RS15865 0.48 +0.3 3,204,177 - A4249_RS15865 0.52 -0.8 3,204,177 - A4249_RS15865 0.52 +0.0 3,204,452 + A4249_RS15865 0.79 +0.0 3,204,452 + A4249_RS15865 0.79 +1.6 3,204,453 - A4249_RS15865 0.79 +0.2 3,204,600 - +1.2 3,204,600 - -0.8 3,204,668 + +0.7 3,204,668 + -0.5 3,204,669 - -0.7 3,204,669 - -0.0 3,204,937 + A4249_RS15870 0.14 +0.4 3,204,937 + A4249_RS15870 0.14 -1.4 3,204,937 + A4249_RS15870 0.14 -1.1 3,204,938 - A4249_RS15870 0.14 +0.0 3,204,959 + A4249_RS15870 0.16 -0.4 3,204,959 + A4249_RS15870 0.16 -0.8 3,204,959 + A4249_RS15870 0.16 +0.1 3,204,960 - A4249_RS15870 0.16 +0.5 3,205,226 + A4249_RS15870 0.34 -0.4 3,205,226 + A4249_RS15870 0.34 +0.5 3,205,256 + A4249_RS15870 0.36 +0.0 3,205,256 + A4249_RS15870 0.36 +0.4 3,205,340 + A4249_RS15870 0.42 -0.5 3,205,341 - A4249_RS15870 0.42 +0.4 3,205,643 + A4249_RS15870 0.62 +1.1 3,205,643 + A4249_RS15870 0.62 +0.7 3,205,643 + A4249_RS15870 0.62 +0.4 3,205,644 - A4249_RS15870 0.62 -0.1 3,205,644 - A4249_RS15870 0.62 -0.6 3,205,644 - A4249_RS15870 0.62 -0.5 3,205,644 - A4249_RS15870 0.62 -1.6 3,205,644 - A4249_RS15870 0.62 +2.4 3,205,644 - A4249_RS15870 0.62 -0.3 3,205,645 + A4249_RS15870 0.63 +1.2 3,205,646 - A4249_RS15870 0.63 +0.4 3,205,739 + A4249_RS15870 0.69 +0.0 3,205,739 + A4249_RS15870 0.69 +0.1 3,205,739 + A4249_RS15870 0.69 -0.9 3,205,740 - A4249_RS15870 0.69 +0.6 3,205,740 - A4249_RS15870 0.69 -0.2 3,205,742 + A4249_RS15870 0.69 -1.0 3,205,742 + A4249_RS15870 0.69 +2.6 3,206,015 + A4249_RS15870 0.88 -0.3 3,206,015 + A4249_RS15870 0.88 +0.5 3,206,034 + A4249_RS15870 0.89 +0.3 3,206,035 - A4249_RS15870 0.89 -1.4 3,206,527 + A4249_RS15875 0.89 +1.2 3,206,527 + A4249_RS15875 0.89 -0.2 3,206,527 + A4249_RS15875 0.89 -2.1 3,206,527 + A4249_RS15875 0.89 -0.8 3,206,528 - A4249_RS15875 0.89 -0.4 3,206,597 - -0.8 3,206,597 - -0.4 3,206,597 - -0.7 3,206,597 - +0.2 3,206,864 + A4249_RS15880 0.35 -1.4 3,206,864 + A4249_RS15880 0.35 +0.1 3,206,865 - A4249_RS15880 0.35 -0.4 3,206,865 - A4249_RS15880 0.35 -0.4 3,206,865 - A4249_RS15880 0.35 -0.3 3,206,865 - A4249_RS15880 0.35 +0.2 3,206,865 - A4249_RS15880 0.35 -0.4 3,207,135 + A4249_RS15880 0.66 -0.6 3,207,135 + A4249_RS15880 0.66 -0.3 3,207,136 - A4249_RS15880 0.66 -0.3 3,207,136 - A4249_RS15880 0.66 -1.3 3,207,136 - A4249_RS15880 0.66 -1.2 3,207,136 - A4249_RS15880 0.66 +0.3
Or see this region's nucleotide sequence