Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13575

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13565 and A4249_RS13570 are separated by 6 nucleotidesA4249_RS13570 and A4249_RS13575 overlap by 1 nucleotidesA4249_RS13575 and A4249_RS13580 overlap by 4 nucleotidesA4249_RS13580 and A4249_RS13585 are separated by 232 nucleotides A4249_RS13565: A4249_RS13565 - carbon-nitrogen hydrolase family protein, at 2,741,243 to 2,742,082 _RS13565 A4249_RS13570: A4249_RS13570 - DUF1178 family protein, at 2,742,089 to 2,742,523 _RS13570 A4249_RS13575: A4249_RS13575 - GNAT family N-acetyltransferase, at 2,742,523 to 2,743,020 _RS13575 A4249_RS13580: A4249_RS13580 - UrcA family protein, at 2,743,017 to 2,743,322 _RS13580 A4249_RS13585: A4249_RS13585 - translational GTPase TypA, at 2,743,555 to 2,745,387 _RS13585 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -2 -1 0 1 2at 2741.639 kb on + strand, within A4249_RS13565at 2741.639 kb on + strand, within A4249_RS13565at 2741.639 kb on + strand, within A4249_RS13565at 2741.639 kb on + strand, within A4249_RS13565at 2741.640 kb on - strand, within A4249_RS13565at 2741.640 kb on - strand, within A4249_RS13565at 2741.723 kb on + strand, within A4249_RS13565at 2742.158 kb on + strand, within A4249_RS13570at 2742.159 kb on - strand, within A4249_RS13570at 2742.353 kb on + strand, within A4249_RS13570at 2742.353 kb on + strand, within A4249_RS13570at 2742.354 kb on - strand, within A4249_RS13570at 2742.354 kb on - strand, within A4249_RS13570at 2742.354 kb on - strand, within A4249_RS13570at 2742.422 kb on + strand, within A4249_RS13570at 2742.423 kb on - strand, within A4249_RS13570at 2742.423 kb on - strand, within A4249_RS13570at 2742.423 kb on - strand, within A4249_RS13570at 2742.423 kb on - strand, within A4249_RS13570at 2742.644 kb on - strand, within A4249_RS13575at 2742.644 kb on - strand, within A4249_RS13575at 2742.694 kb on + strand, within A4249_RS13575at 2742.694 kb on + strand, within A4249_RS13575at 2742.695 kb on - strand, within A4249_RS13575at 2742.707 kb on - strand, within A4249_RS13575at 2742.781 kb on + strand, within A4249_RS13575at 2742.781 kb on + strand, within A4249_RS13575at 2742.781 kb on + strand, within A4249_RS13575at 2742.781 kb on + strand, within A4249_RS13575at 2742.781 kb on + strand, within A4249_RS13575at 2742.781 kb on + strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.782 kb on - strand, within A4249_RS13575at 2742.978 kb on + strandat 2742.979 kb on - strandat 2742.982 kb on + strandat 2742.982 kb on + strandat 2742.983 kb on - strandat 2742.983 kb on - strandat 2742.983 kb on - strandat 2742.983 kb on - strandat 2742.983 kb on - strandat 2743.000 kb on + strandat 2743.000 kb on + strandat 2743.000 kb on + strandat 2743.001 kb on - strandat 2743.001 kb on - strandat 2743.001 kb on - strandat 2743.001 kb on - strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.002 kb on + strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.003 kb on - strandat 2743.018 kb on + strandat 2743.018 kb on + strandat 2743.090 kb on + strand, within A4249_RS13580at 2743.090 kb on + strand, within A4249_RS13580at 2743.091 kb on - strand, within A4249_RS13580at 2743.091 kb on - strand, within A4249_RS13580at 2743.091 kb on - strand, within A4249_RS13580at 2743.091 kb on - strand, within A4249_RS13580at 2743.091 kb on - strand, within A4249_RS13580at 2743.091 kb on - strand, within A4249_RS13580at 2743.235 kb on + strand, within A4249_RS13580at 2743.235 kb on + strand, within A4249_RS13580at 2743.414 kb on - strandat 2743.475 kb on + strandat 2743.475 kb on + strandat 2743.475 kb on + strandat 2743.475 kb on + strandat 2743.475 kb on + strandat 2743.475 kb on + strandat 2743.476 kb on - strandat 2743.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,741,639 + A4249_RS13565 0.47 +0.4
2,741,639 + A4249_RS13565 0.47 +0.2
2,741,639 + A4249_RS13565 0.47 -0.2
2,741,639 + A4249_RS13565 0.47 -2.3
2,741,640 - A4249_RS13565 0.47 -0.5
2,741,640 - A4249_RS13565 0.47 -0.4
2,741,723 + A4249_RS13565 0.57 +0.7
2,742,158 + A4249_RS13570 0.16 +0.1
2,742,159 - A4249_RS13570 0.16 +0.1
2,742,353 + A4249_RS13570 0.61 -0.4
2,742,353 + A4249_RS13570 0.61 -0.2
2,742,354 - A4249_RS13570 0.61 +0.8
2,742,354 - A4249_RS13570 0.61 +0.2
2,742,354 - A4249_RS13570 0.61 +0.2
2,742,422 + A4249_RS13570 0.77 +1.2
2,742,423 - A4249_RS13570 0.77 -0.1
2,742,423 - A4249_RS13570 0.77 +0.2
2,742,423 - A4249_RS13570 0.77 +0.7
2,742,423 - A4249_RS13570 0.77 +1.6
2,742,644 - A4249_RS13575 0.24 -0.9
2,742,644 - A4249_RS13575 0.24 +0.1
2,742,694 + A4249_RS13575 0.34 +0.6
2,742,694 + A4249_RS13575 0.34 -0.3
2,742,695 - A4249_RS13575 0.35 -1.1
2,742,707 - A4249_RS13575 0.37 -0.4
2,742,781 + A4249_RS13575 0.52 -0.3
2,742,781 + A4249_RS13575 0.52 +2.0
2,742,781 + A4249_RS13575 0.52 -1.9
2,742,781 + A4249_RS13575 0.52 +0.0
2,742,781 + A4249_RS13575 0.52 -0.2
2,742,781 + A4249_RS13575 0.52 -0.6
2,742,782 - A4249_RS13575 0.52 -1.3
2,742,782 - A4249_RS13575 0.52 -0.3
2,742,782 - A4249_RS13575 0.52 -0.7
2,742,782 - A4249_RS13575 0.52 +0.7
2,742,782 - A4249_RS13575 0.52 -0.9
2,742,782 - A4249_RS13575 0.52 -0.8
2,742,782 - A4249_RS13575 0.52 -1.0
2,742,782 - A4249_RS13575 0.52 +0.3
2,742,978 + -0.3
2,742,979 - -0.1
2,742,982 + -0.2
2,742,982 + -1.0
2,742,983 - -0.6
2,742,983 - -0.5
2,742,983 - +0.2
2,742,983 - -0.1
2,742,983 - -0.6
2,743,000 + -0.1
2,743,000 + -0.4
2,743,000 + -0.4
2,743,001 - +0.6
2,743,001 - -0.5
2,743,001 - +0.5
2,743,001 - -0.7
2,743,002 + -1.2
2,743,002 + +0.7
2,743,002 + -0.3
2,743,002 + -0.0
2,743,002 + +1.0
2,743,002 + -0.9
2,743,002 + -0.9
2,743,002 + +1.0
2,743,002 + +0.0
2,743,002 + -1.9
2,743,003 - -0.1
2,743,003 - +0.2
2,743,003 - +0.4
2,743,003 - +0.1
2,743,003 - -0.2
2,743,003 - +1.0
2,743,003 - -0.6
2,743,003 - -0.2
2,743,003 - -1.1
2,743,003 - -0.5
2,743,018 + -1.1
2,743,018 + -1.2
2,743,090 + A4249_RS13580 0.24 -0.6
2,743,090 + A4249_RS13580 0.24 -0.3
2,743,091 - A4249_RS13580 0.24 +0.2
2,743,091 - A4249_RS13580 0.24 -0.3
2,743,091 - A4249_RS13580 0.24 -0.4
2,743,091 - A4249_RS13580 0.24 -0.6
2,743,091 - A4249_RS13580 0.24 +0.1
2,743,091 - A4249_RS13580 0.24 -1.1
2,743,235 + A4249_RS13580 0.71 -1.1
2,743,235 + A4249_RS13580 0.71 +0.5
2,743,414 - +0.4
2,743,475 + -0.1
2,743,475 + -0.1
2,743,475 + +0.1
2,743,475 + -0.3
2,743,475 + -0.8
2,743,475 + +0.3
2,743,476 - -0.6
2,743,476 - +0.9

Or see this region's nucleotide sequence