Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13185

Experiment: Guanosine 0.35306 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13175 and A4249_RS13180 are separated by 7 nucleotidesA4249_RS13180 and A4249_RS13185 are separated by 0 nucleotidesA4249_RS13185 and A4249_RS13190 are separated by 462 nucleotides A4249_RS13175: A4249_RS13175 - Rrf2 family transcriptional regulator, at 2,654,073 to 2,654,543 _RS13175 A4249_RS13180: A4249_RS13180 - SDR family oxidoreductase, at 2,654,551 to 2,655,348 _RS13180 A4249_RS13185: A4249_RS13185 - dihydrolipoyl dehydrogenase, at 2,655,349 to 2,656,746 _RS13185 A4249_RS13190: A4249_RS13190 - 2-oxo acid dehydrogenase subunit E2, at 2,657,209 to 2,658,864 _RS13190 Position (kb) 2655 2656 2657Strain fitness (log2 ratio) -2 -1 0 1at 2654.393 kb on + strand, within A4249_RS13175at 2654.610 kb on + strandat 2654.610 kb on + strandat 2654.610 kb on + strandat 2654.610 kb on + strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2655.008 kb on - strand, within A4249_RS13180at 2655.208 kb on + strand, within A4249_RS13180at 2655.209 kb on - strand, within A4249_RS13180at 2655.209 kb on - strand, within A4249_RS13180at 2655.786 kb on + strand, within A4249_RS13185at 2655.786 kb on + strand, within A4249_RS13185at 2655.787 kb on - strand, within A4249_RS13185at 2656.005 kb on + strand, within A4249_RS13185at 2656.005 kb on + strand, within A4249_RS13185at 2656.100 kb on + strand, within A4249_RS13185at 2656.113 kb on + strand, within A4249_RS13185at 2656.113 kb on + strand, within A4249_RS13185at 2656.114 kb on - strand, within A4249_RS13185at 2656.188 kb on - strand, within A4249_RS13185at 2656.188 kb on - strand, within A4249_RS13185at 2656.453 kb on - strand, within A4249_RS13185at 2656.691 kb on + strandat 2656.691 kb on + strandat 2656.857 kb on + strandat 2656.857 kb on + strandat 2656.857 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.932 kb on + strandat 2656.932 kb on + strandat 2656.932 kb on + strandat 2656.932 kb on + strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.969 kb on - strandat 2657.041 kb on - strandat 2657.119 kb on + strandat 2657.119 kb on + strandat 2657.119 kb on + strandat 2657.119 kb on + strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.205 kb on - strandat 2657.205 kb on - strandat 2657.205 kb on - strandat 2657.205 kb on - strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.547 kb on - strand, within A4249_RS13190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
remove
2,654,393 + A4249_RS13175 0.68 +1.1
2,654,610 + +1.3
2,654,610 + -0.1
2,654,610 + -0.3
2,654,610 + -0.1
2,654,611 - -1.7
2,654,611 - +0.0
2,654,611 - +0.3
2,654,611 - +0.0
2,654,611 - -1.0
2,654,611 - -1.0
2,654,611 - +0.1
2,654,611 - -0.3
2,654,611 - +0.6
2,654,614 + -0.1
2,654,614 + -0.8
2,654,614 + +0.5
2,654,614 + -0.4
2,654,614 + +0.6
2,654,615 - -0.6
2,654,615 - -1.1
2,654,615 - +1.0
2,654,615 - -0.4
2,654,615 - -0.6
2,654,615 - -1.7
2,654,615 - -0.7
2,655,008 - A4249_RS13180 0.57 +0.0
2,655,208 + A4249_RS13180 0.82 -0.1
2,655,209 - A4249_RS13180 0.82 +0.6
2,655,209 - A4249_RS13180 0.82 -2.0
2,655,786 + A4249_RS13185 0.31 -0.2
2,655,786 + A4249_RS13185 0.31 -0.6
2,655,787 - A4249_RS13185 0.31 +1.2
2,656,005 + A4249_RS13185 0.47 +0.4
2,656,005 + A4249_RS13185 0.47 +1.1
2,656,100 + A4249_RS13185 0.54 +0.2
2,656,113 + A4249_RS13185 0.55 -0.2
2,656,113 + A4249_RS13185 0.55 -0.6
2,656,114 - A4249_RS13185 0.55 +1.2
2,656,188 - A4249_RS13185 0.60 +0.6
2,656,188 - A4249_RS13185 0.60 +0.2
2,656,453 - A4249_RS13185 0.79 +0.7
2,656,691 + -0.1
2,656,691 + -0.4
2,656,857 + +0.4
2,656,857 + -1.4
2,656,857 + -0.1
2,656,922 + -0.1
2,656,922 + -0.4
2,656,922 + -0.3
2,656,922 + +0.5
2,656,922 + -1.0
2,656,923 - +0.6
2,656,923 - -0.1
2,656,923 - -1.3
2,656,923 - +0.6
2,656,923 - -0.8
2,656,923 - -0.1
2,656,923 - -0.7
2,656,923 - -0.1
2,656,923 - +0.4
2,656,923 - +0.2
2,656,923 - -0.6
2,656,923 - -0.5
2,656,932 + -0.1
2,656,932 + -1.4
2,656,932 + +0.3
2,656,932 + +0.4
2,656,933 - +0.4
2,656,933 - +0.3
2,656,933 - -1.4
2,656,933 - -0.6
2,656,933 - -1.2
2,656,933 - -0.3
2,656,933 - -0.1
2,656,969 - -1.1
2,657,041 - -0.2
2,657,119 + -0.5
2,657,119 + -1.0
2,657,119 + +0.1
2,657,119 + +0.2
2,657,120 - +0.2
2,657,120 - +1.1
2,657,120 - +0.6
2,657,120 - +0.1
2,657,120 - -0.2
2,657,120 - -0.7
2,657,120 - -0.1
2,657,204 + -0.3
2,657,204 + +0.3
2,657,204 + -0.9
2,657,204 + +0.8
2,657,204 + -0.3
2,657,204 + +1.3
2,657,205 - +1.6
2,657,205 - +0.5
2,657,205 - +0.0
2,657,205 - -1.8
2,657,206 + +0.4
2,657,206 + +0.9
2,657,206 + -1.6
2,657,206 + -0.5
2,657,206 + -0.2
2,657,206 + +0.4
2,657,206 + -0.2
2,657,207 - +0.0
2,657,207 - +1.6
2,657,207 - -0.2
2,657,207 - -0.5
2,657,207 - -0.3
2,657,207 - +0.4
2,657,207 - -0.6
2,657,207 - -0.4
2,657,207 - +0.1
2,657,207 - +0.3
2,657,207 - +0.1
2,657,207 - -0.4
2,657,207 - +0.4
2,657,207 - +0.4
2,657,207 - +0.4
2,657,207 - +0.1
2,657,207 - -0.0
2,657,547 - A4249_RS13190 0.20 -1.0

Or see this region's nucleotide sequence