Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12870

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12865 and A4249_RS12870 are separated by 81 nucleotidesA4249_RS12870 and A4249_RS12875 are separated by 173 nucleotides A4249_RS12865: A4249_RS12865 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,582,315 to 2,583,475 _RS12865 A4249_RS12870: A4249_RS12870 - DUF6356 family protein, at 2,583,557 to 2,583,856 _RS12870 A4249_RS12875: A4249_RS12875 - trypsin-like peptidase domain-containing protein, at 2,584,030 to 2,585,361 _RS12875 Position (kb) 2583 2584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.655 kb on + strand, within A4249_RS12865at 2582.656 kb on - strand, within A4249_RS12865at 2582.691 kb on + strand, within A4249_RS12865at 2582.691 kb on + strand, within A4249_RS12865at 2582.692 kb on - strand, within A4249_RS12865at 2582.898 kb on + strand, within A4249_RS12865at 2582.898 kb on + strand, within A4249_RS12865at 2582.898 kb on + strand, within A4249_RS12865at 2582.899 kb on - strand, within A4249_RS12865at 2582.899 kb on - strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.128 kb on - strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.300 kb on + strand, within A4249_RS12865at 2583.507 kb on + strandat 2583.507 kb on + strandat 2583.507 kb on + strandat 2583.507 kb on + strandat 2583.507 kb on + strandat 2583.508 kb on - strandat 2583.508 kb on - strandat 2583.509 kb on + strandat 2583.509 kb on + strandat 2583.509 kb on + strandat 2583.509 kb on + strandat 2583.509 kb on + strandat 2583.509 kb on + strandat 2583.509 kb on + strandat 2583.509 kb on + strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.510 kb on - strandat 2583.511 kb on + strandat 2583.511 kb on + strandat 2583.511 kb on + strandat 2583.511 kb on + strandat 2583.511 kb on + strandat 2583.511 kb on + strandat 2583.511 kb on + strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.512 kb on - strandat 2583.558 kb on + strandat 2583.559 kb on - strandat 2583.559 kb on - strandat 2583.559 kb on - strandat 2583.765 kb on + strand, within A4249_RS12870at 2583.765 kb on + strand, within A4249_RS12870at 2583.765 kb on + strand, within A4249_RS12870at 2583.765 kb on + strand, within A4249_RS12870at 2583.765 kb on + strand, within A4249_RS12870at 2583.765 kb on + strand, within A4249_RS12870at 2583.766 kb on - strand, within A4249_RS12870at 2583.766 kb on - strand, within A4249_RS12870at 2583.766 kb on - strand, within A4249_RS12870at 2584.000 kb on + strandat 2584.000 kb on + strandat 2584.000 kb on + strandat 2584.000 kb on + strandat 2584.000 kb on + strandat 2584.000 kb on + strandat 2584.001 kb on - strandat 2584.001 kb on - strandat 2584.132 kb on + strandat 2584.132 kb on + strandat 2584.133 kb on - strandat 2584.133 kb on - strandat 2584.133 kb on - strandat 2584.258 kb on + strand, within A4249_RS12875at 2584.338 kb on + strand, within A4249_RS12875at 2584.338 kb on + strand, within A4249_RS12875at 2584.338 kb on + strand, within A4249_RS12875at 2584.339 kb on - strand, within A4249_RS12875at 2584.339 kb on - strand, within A4249_RS12875at 2584.339 kb on - strand, within A4249_RS12875at 2584.339 kb on - strand, within A4249_RS12875at 2584.584 kb on - strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.603 kb on + strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.604 kb on - strand, within A4249_RS12875at 2584.605 kb on + strand, within A4249_RS12875at 2584.605 kb on + strand, within A4249_RS12875at 2584.606 kb on - strand, within A4249_RS12875at 2584.606 kb on - strand, within A4249_RS12875at 2584.762 kb on + strand, within A4249_RS12875at 2584.762 kb on + strand, within A4249_RS12875at 2584.762 kb on + strand, within A4249_RS12875at 2584.762 kb on + strand, within A4249_RS12875at 2584.762 kb on + strand, within A4249_RS12875at 2584.763 kb on - strand, within A4249_RS12875at 2584.763 kb on - strand, within A4249_RS12875at 2584.763 kb on - strand, within A4249_RS12875at 2584.763 kb on - strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875at 2584.856 kb on + strand, within A4249_RS12875

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,582,616 + A4249_RS12865 0.26 +0.4
2,582,616 + A4249_RS12865 0.26 +0.3
2,582,616 + A4249_RS12865 0.26 -0.1
2,582,616 + A4249_RS12865 0.26 -0.3
2,582,616 + A4249_RS12865 0.26 +0.4
2,582,616 + A4249_RS12865 0.26 -0.1
2,582,616 + A4249_RS12865 0.26 +0.4
2,582,616 + A4249_RS12865 0.26 +1.3
2,582,616 + A4249_RS12865 0.26 -0.8
2,582,617 - A4249_RS12865 0.26 +1.4
2,582,617 - A4249_RS12865 0.26 +0.9
2,582,617 - A4249_RS12865 0.26 -1.5
2,582,655 + A4249_RS12865 0.29 +2.6
2,582,656 - A4249_RS12865 0.29 -1.1
2,582,691 + A4249_RS12865 0.32 -0.6
2,582,691 + A4249_RS12865 0.32 -1.1
2,582,692 - A4249_RS12865 0.32 -0.4
2,582,898 + A4249_RS12865 0.50 +0.9
2,582,898 + A4249_RS12865 0.50 +0.0
2,582,898 + A4249_RS12865 0.50 -0.8
2,582,899 - A4249_RS12865 0.50 -0.1
2,582,899 - A4249_RS12865 0.50 -0.4
2,583,127 + A4249_RS12865 0.70 -0.6
2,583,127 + A4249_RS12865 0.70 -0.6
2,583,127 + A4249_RS12865 0.70 +0.9
2,583,127 + A4249_RS12865 0.70 -0.8
2,583,127 + A4249_RS12865 0.70 -0.6
2,583,128 - A4249_RS12865 0.70 -0.1
2,583,129 + A4249_RS12865 0.70 -2.8
2,583,129 + A4249_RS12865 0.70 -0.0
2,583,129 + A4249_RS12865 0.70 -0.6
2,583,129 + A4249_RS12865 0.70 -0.6
2,583,129 + A4249_RS12865 0.70 -0.1
2,583,129 + A4249_RS12865 0.70 +0.8
2,583,129 + A4249_RS12865 0.70 -0.2
2,583,129 + A4249_RS12865 0.70 +0.7
2,583,129 + A4249_RS12865 0.70 -2.0
2,583,129 + A4249_RS12865 0.70 -0.4
2,583,129 + A4249_RS12865 0.70 -0.7
2,583,129 + A4249_RS12865 0.70 -1.3
2,583,130 - A4249_RS12865 0.70 +0.9
2,583,130 - A4249_RS12865 0.70 +0.9
2,583,130 - A4249_RS12865 0.70 +0.9
2,583,130 - A4249_RS12865 0.70 +0.0
2,583,130 - A4249_RS12865 0.70 +0.5
2,583,130 - A4249_RS12865 0.70 -1.8
2,583,130 - A4249_RS12865 0.70 -0.3
2,583,130 - A4249_RS12865 0.70 -0.4
2,583,130 - A4249_RS12865 0.70 -0.2
2,583,130 - A4249_RS12865 0.70 +0.0
2,583,130 - A4249_RS12865 0.70 -0.1
2,583,130 - A4249_RS12865 0.70 +0.4
2,583,130 - A4249_RS12865 0.70 +0.9
2,583,300 + A4249_RS12865 0.85 +1.3
2,583,507 + -0.3
2,583,507 + +1.8
2,583,507 + +0.1
2,583,507 + +0.3
2,583,507 + -0.3
2,583,508 - -0.1
2,583,508 - -0.6
2,583,509 + -0.7
2,583,509 + -1.3
2,583,509 + -0.2
2,583,509 + +0.2
2,583,509 + +0.7
2,583,509 + -0.8
2,583,509 + -0.3
2,583,509 + +0.2
2,583,510 - -0.6
2,583,510 - +0.5
2,583,510 - -1.0
2,583,510 - +1.0
2,583,510 - -0.4
2,583,510 - +1.0
2,583,510 - -0.2
2,583,510 - +1.0
2,583,510 - +0.2
2,583,510 - -0.6
2,583,511 + +0.9
2,583,511 + -1.2
2,583,511 + -0.2
2,583,511 + -1.3
2,583,511 + -0.3
2,583,511 + +1.0
2,583,511 + +0.9
2,583,512 - +0.2
2,583,512 - -0.2
2,583,512 - +1.0
2,583,512 - +0.6
2,583,512 - +0.6
2,583,512 - +0.8
2,583,512 - -0.3
2,583,512 - -0.8
2,583,512 - +0.0
2,583,512 - -1.3
2,583,512 - -1.1
2,583,512 - -0.6
2,583,512 - +1.1
2,583,558 + +1.0
2,583,559 - +0.7
2,583,559 - -1.4
2,583,559 - -0.2
2,583,765 + A4249_RS12870 0.69 +0.2
2,583,765 + A4249_RS12870 0.69 -0.8
2,583,765 + A4249_RS12870 0.69 -1.7
2,583,765 + A4249_RS12870 0.69 +0.4
2,583,765 + A4249_RS12870 0.69 -1.0
2,583,765 + A4249_RS12870 0.69 +0.5
2,583,766 - A4249_RS12870 0.70 -0.3
2,583,766 - A4249_RS12870 0.70 +0.3
2,583,766 - A4249_RS12870 0.70 -0.1
2,584,000 + +1.3
2,584,000 + +0.5
2,584,000 + -0.3
2,584,000 + +0.1
2,584,000 + -0.7
2,584,000 + +0.3
2,584,001 - -0.4
2,584,001 - -0.3
2,584,132 + -0.1
2,584,132 + +0.4
2,584,133 - +0.6
2,584,133 - -0.0
2,584,133 - -0.1
2,584,258 + A4249_RS12875 0.17 +0.6
2,584,338 + A4249_RS12875 0.23 +1.0
2,584,338 + A4249_RS12875 0.23 -0.3
2,584,338 + A4249_RS12875 0.23 -0.3
2,584,339 - A4249_RS12875 0.23 -1.0
2,584,339 - A4249_RS12875 0.23 -0.4
2,584,339 - A4249_RS12875 0.23 -0.4
2,584,339 - A4249_RS12875 0.23 +0.9
2,584,584 - A4249_RS12875 0.42 -0.5
2,584,603 + A4249_RS12875 0.43 -1.0
2,584,603 + A4249_RS12875 0.43 -0.9
2,584,603 + A4249_RS12875 0.43 +0.0
2,584,603 + A4249_RS12875 0.43 -0.4
2,584,603 + A4249_RS12875 0.43 -0.7
2,584,603 + A4249_RS12875 0.43 -1.0
2,584,603 + A4249_RS12875 0.43 -0.1
2,584,603 + A4249_RS12875 0.43 -0.7
2,584,603 + A4249_RS12875 0.43 +0.3
2,584,604 - A4249_RS12875 0.43 +1.9
2,584,604 - A4249_RS12875 0.43 +0.9
2,584,604 - A4249_RS12875 0.43 +0.3
2,584,604 - A4249_RS12875 0.43 -0.4
2,584,604 - A4249_RS12875 0.43 -0.8
2,584,604 - A4249_RS12875 0.43 +0.2
2,584,604 - A4249_RS12875 0.43 -0.2
2,584,604 - A4249_RS12875 0.43 -1.1
2,584,605 + A4249_RS12875 0.43 -0.1
2,584,605 + A4249_RS12875 0.43 -0.2
2,584,606 - A4249_RS12875 0.43 +0.2
2,584,606 - A4249_RS12875 0.43 +0.2
2,584,762 + A4249_RS12875 0.55 +1.1
2,584,762 + A4249_RS12875 0.55 +0.5
2,584,762 + A4249_RS12875 0.55 -0.3
2,584,762 + A4249_RS12875 0.55 -1.3
2,584,762 + A4249_RS12875 0.55 -0.5
2,584,763 - A4249_RS12875 0.55 -0.2
2,584,763 - A4249_RS12875 0.55 -0.4
2,584,763 - A4249_RS12875 0.55 +0.8
2,584,763 - A4249_RS12875 0.55 -1.4
2,584,856 + A4249_RS12875 0.62 +1.0
2,584,856 + A4249_RS12875 0.62 -1.0
2,584,856 + A4249_RS12875 0.62 -0.1
2,584,856 + A4249_RS12875 0.62 -1.3
2,584,856 + A4249_RS12875 0.62 -0.3
2,584,856 + A4249_RS12875 0.62 +0.5
2,584,856 + A4249_RS12875 0.62 -0.6
2,584,856 + A4249_RS12875 0.62 +1.6
2,584,856 + A4249_RS12875 0.62 +0.5

Or see this region's nucleotide sequence