Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12470

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12460 and A4249_RS12465 are separated by 188 nucleotidesA4249_RS12465 and A4249_RS12470 are separated by 71 nucleotidesA4249_RS12470 and A4249_RS12475 are separated by 75 nucleotidesA4249_RS12475 and A4249_RS12480 are separated by 4 nucleotides A4249_RS12460: A4249_RS12460 - GlsB/YeaQ/YmgE family stress response membrane protein, at 2,499,342 to 2,499,596 _RS12460 A4249_RS12465: A4249_RS12465 - helix-turn-helix transcriptional regulator, at 2,499,785 to 2,500,165 _RS12465 A4249_RS12470: A4249_RS12470 - histidinol-phosphatase, at 2,500,237 to 2,501,022 _RS12470 A4249_RS12475: A4249_RS12475 - hypothetical protein, at 2,501,098 to 2,501,667 _RS12475 A4249_RS12480: A4249_RS12480 - alpha/beta hydrolase, at 2,501,672 to 2,502,706 _RS12480 Position (kb) 2500 2501 2502Strain fitness (log2 ratio) -2 -1 0 1 2at 2499.305 kb on + strandat 2499.305 kb on + strandat 2499.305 kb on + strandat 2499.306 kb on - strandat 2499.324 kb on + strandat 2499.325 kb on - strandat 2499.393 kb on + strand, within A4249_RS12460at 2499.394 kb on - strand, within A4249_RS12460at 2499.652 kb on + strandat 2499.685 kb on + strandat 2499.686 kb on - strandat 2499.686 kb on - strandat 2499.686 kb on - strandat 2499.906 kb on - strand, within A4249_RS12465at 2499.906 kb on - strand, within A4249_RS12465at 2499.906 kb on - strand, within A4249_RS12465at 2499.980 kb on + strand, within A4249_RS12465at 2499.981 kb on - strand, within A4249_RS12465at 2499.981 kb on - strand, within A4249_RS12465at 2499.986 kb on + strand, within A4249_RS12465at 2499.986 kb on + strand, within A4249_RS12465at 2499.986 kb on + strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2499.987 kb on - strand, within A4249_RS12465at 2500.082 kb on + strand, within A4249_RS12465at 2500.082 kb on + strand, within A4249_RS12465at 2500.082 kb on + strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.083 kb on - strand, within A4249_RS12465at 2500.085 kb on + strand, within A4249_RS12465at 2500.085 kb on + strand, within A4249_RS12465at 2500.085 kb on + strand, within A4249_RS12465at 2500.085 kb on + strand, within A4249_RS12465at 2500.085 kb on + strand, within A4249_RS12465at 2500.085 kb on + strand, within A4249_RS12465at 2500.086 kb on - strand, within A4249_RS12465at 2500.086 kb on - strand, within A4249_RS12465at 2500.086 kb on - strand, within A4249_RS12465at 2500.316 kb on + strand, within A4249_RS12470at 2500.316 kb on + strand, within A4249_RS12470at 2500.316 kb on + strand, within A4249_RS12470at 2500.317 kb on - strand, within A4249_RS12470at 2500.802 kb on - strand, within A4249_RS12470at 2501.040 kb on + strandat 2501.040 kb on + strandat 2501.040 kb on + strandat 2501.040 kb on + strandat 2501.041 kb on - strandat 2501.251 kb on + strand, within A4249_RS12475at 2501.252 kb on - strand, within A4249_RS12475at 2501.488 kb on + strand, within A4249_RS12475at 2501.488 kb on + strand, within A4249_RS12475at 2501.489 kb on - strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.519 kb on + strand, within A4249_RS12475at 2501.520 kb on - strand, within A4249_RS12475at 2501.520 kb on - strand, within A4249_RS12475at 2501.520 kb on - strand, within A4249_RS12475at 2501.520 kb on - strand, within A4249_RS12475at 2501.520 kb on - strand, within A4249_RS12475at 2501.520 kb on - strand, within A4249_RS12475at 2501.612 kb on + strandat 2501.612 kb on + strandat 2501.612 kb on + strandat 2501.612 kb on + strandat 2501.613 kb on - strandat 2501.613 kb on - strandat 2501.613 kb on - strandat 2501.613 kb on - strandat 2501.613 kb on - strandat 2501.750 kb on - strandat 2501.832 kb on + strand, within A4249_RS12480at 2501.833 kb on - strand, within A4249_RS12480at 2501.833 kb on - strand, within A4249_RS12480at 2501.833 kb on - strand, within A4249_RS12480at 2501.833 kb on - strand, within A4249_RS12480at 2501.833 kb on - strand, within A4249_RS12480at 2501.833 kb on - strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.994 kb on + strand, within A4249_RS12480at 2501.995 kb on - strand, within A4249_RS12480at 2501.995 kb on - strand, within A4249_RS12480at 2501.995 kb on - strand, within A4249_RS12480at 2501.995 kb on - strand, within A4249_RS12480at 2501.995 kb on - strand, within A4249_RS12480

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,499,305 + +1.9
2,499,305 + -1.7
2,499,305 + -0.4
2,499,306 - +2.0
2,499,324 + -0.1
2,499,325 - +0.2
2,499,393 + A4249_RS12460 0.20 +0.0
2,499,394 - A4249_RS12460 0.20 +2.1
2,499,652 + +0.4
2,499,685 + -0.8
2,499,686 - -0.2
2,499,686 - +0.4
2,499,686 - +0.1
2,499,906 - A4249_RS12465 0.32 +0.2
2,499,906 - A4249_RS12465 0.32 +0.8
2,499,906 - A4249_RS12465 0.32 -0.6
2,499,980 + A4249_RS12465 0.51 +1.2
2,499,981 - A4249_RS12465 0.51 -0.3
2,499,981 - A4249_RS12465 0.51 -0.3
2,499,986 + A4249_RS12465 0.53 -2.1
2,499,986 + A4249_RS12465 0.53 +0.2
2,499,986 + A4249_RS12465 0.53 -0.8
2,499,987 - A4249_RS12465 0.53 -1.2
2,499,987 - A4249_RS12465 0.53 +0.4
2,499,987 - A4249_RS12465 0.53 -0.4
2,499,987 - A4249_RS12465 0.53 +0.2
2,499,987 - A4249_RS12465 0.53 -0.1
2,499,987 - A4249_RS12465 0.53 -0.9
2,499,987 - A4249_RS12465 0.53 -0.6
2,499,987 - A4249_RS12465 0.53 +0.3
2,499,987 - A4249_RS12465 0.53 +0.3
2,500,082 + A4249_RS12465 0.78 +0.5
2,500,082 + A4249_RS12465 0.78 +0.4
2,500,082 + A4249_RS12465 0.78 -0.0
2,500,083 - A4249_RS12465 0.78 +0.0
2,500,083 - A4249_RS12465 0.78 +0.6
2,500,083 - A4249_RS12465 0.78 +0.0
2,500,083 - A4249_RS12465 0.78 +0.0
2,500,083 - A4249_RS12465 0.78 -0.6
2,500,083 - A4249_RS12465 0.78 +1.2
2,500,083 - A4249_RS12465 0.78 -0.7
2,500,083 - A4249_RS12465 0.78 -0.1
2,500,085 + A4249_RS12465 0.79 +0.3
2,500,085 + A4249_RS12465 0.79 +0.2
2,500,085 + A4249_RS12465 0.79 +1.3
2,500,085 + A4249_RS12465 0.79 -1.3
2,500,085 + A4249_RS12465 0.79 +0.9
2,500,085 + A4249_RS12465 0.79 -0.5
2,500,086 - A4249_RS12465 0.79 +1.0
2,500,086 - A4249_RS12465 0.79 +0.1
2,500,086 - A4249_RS12465 0.79 -1.3
2,500,316 + A4249_RS12470 0.10 -0.6
2,500,316 + A4249_RS12470 0.10 -0.3
2,500,316 + A4249_RS12470 0.10 +0.0
2,500,317 - A4249_RS12470 0.10 +0.5
2,500,802 - A4249_RS12470 0.72 +0.5
2,501,040 + +2.1
2,501,040 + -0.5
2,501,040 + -1.0
2,501,040 + -1.8
2,501,041 - +0.6
2,501,251 + A4249_RS12475 0.27 +0.6
2,501,252 - A4249_RS12475 0.27 +1.3
2,501,488 + A4249_RS12475 0.68 +0.5
2,501,488 + A4249_RS12475 0.68 +1.4
2,501,489 - A4249_RS12475 0.69 -1.1
2,501,519 + A4249_RS12475 0.74 -0.0
2,501,519 + A4249_RS12475 0.74 +0.4
2,501,519 + A4249_RS12475 0.74 +0.8
2,501,519 + A4249_RS12475 0.74 -0.1
2,501,519 + A4249_RS12475 0.74 -1.3
2,501,519 + A4249_RS12475 0.74 +0.3
2,501,519 + A4249_RS12475 0.74 -0.4
2,501,519 + A4249_RS12475 0.74 +0.1
2,501,519 + A4249_RS12475 0.74 +0.4
2,501,519 + A4249_RS12475 0.74 -0.4
2,501,519 + A4249_RS12475 0.74 -0.0
2,501,520 - A4249_RS12475 0.74 -0.5
2,501,520 - A4249_RS12475 0.74 +1.0
2,501,520 - A4249_RS12475 0.74 -1.7
2,501,520 - A4249_RS12475 0.74 +0.1
2,501,520 - A4249_RS12475 0.74 +0.5
2,501,520 - A4249_RS12475 0.74 -0.3
2,501,612 + +0.6
2,501,612 + -0.2
2,501,612 + +0.0
2,501,612 + -0.4
2,501,613 - +0.5
2,501,613 - -0.1
2,501,613 - +1.4
2,501,613 - -0.4
2,501,613 - +0.4
2,501,750 - +0.0
2,501,832 + A4249_RS12480 0.15 -0.9
2,501,833 - A4249_RS12480 0.16 +0.7
2,501,833 - A4249_RS12480 0.16 +0.4
2,501,833 - A4249_RS12480 0.16 +0.8
2,501,833 - A4249_RS12480 0.16 +0.2
2,501,833 - A4249_RS12480 0.16 +0.4
2,501,833 - A4249_RS12480 0.16 +1.1
2,501,994 + A4249_RS12480 0.31 +0.3
2,501,994 + A4249_RS12480 0.31 +0.6
2,501,994 + A4249_RS12480 0.31 +0.5
2,501,994 + A4249_RS12480 0.31 -0.0
2,501,994 + A4249_RS12480 0.31 +0.6
2,501,994 + A4249_RS12480 0.31 +0.8
2,501,994 + A4249_RS12480 0.31 +1.5
2,501,994 + A4249_RS12480 0.31 +1.1
2,501,994 + A4249_RS12480 0.31 +1.8
2,501,995 - A4249_RS12480 0.31 +0.3
2,501,995 - A4249_RS12480 0.31 +0.9
2,501,995 - A4249_RS12480 0.31 +0.3
2,501,995 - A4249_RS12480 0.31 +0.1
2,501,995 - A4249_RS12480 0.31 +1.0

Or see this region's nucleotide sequence