Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09565

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09555 and A4249_RS09560 overlap by 11 nucleotidesA4249_RS09560 and A4249_RS09565 are separated by 23 nucleotidesA4249_RS09565 and A4249_RS09570 are separated by 11 nucleotidesA4249_RS09570 and A4249_RS09575 are separated by 2 nucleotides A4249_RS09555: A4249_RS09555 - iron-containing redox enzyme family protein, at 1,908,539 to 1,909,216 _RS09555 A4249_RS09560: A4249_RS09560 - SDR family NAD(P)-dependent oxidoreductase, at 1,909,206 to 1,909,958 _RS09560 A4249_RS09565: A4249_RS09565 - hypothetical protein, at 1,909,982 to 1,910,629 _RS09565 A4249_RS09570: A4249_RS09570 - isoprenylcysteine carboxylmethyltransferase family protein, at 1,910,641 to 1,911,270 _RS09570 A4249_RS09575: A4249_RS09575 - hypothetical protein, at 1,911,273 to 1,912,091 _RS09575 Position (kb) 1909 1910 1911Strain fitness (log2 ratio) -2 -1 0 1 2at 1909.028 kb on + strand, within A4249_RS09555at 1909.028 kb on + strand, within A4249_RS09555at 1909.028 kb on + strand, within A4249_RS09555at 1909.028 kb on + strand, within A4249_RS09555at 1909.028 kb on + strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.029 kb on - strand, within A4249_RS09555at 1909.346 kb on - strand, within A4249_RS09560at 1909.354 kb on + strand, within A4249_RS09560at 1909.354 kb on + strand, within A4249_RS09560at 1909.354 kb on + strand, within A4249_RS09560at 1909.354 kb on + strand, within A4249_RS09560at 1909.354 kb on + strand, within A4249_RS09560at 1909.355 kb on - strand, within A4249_RS09560at 1909.355 kb on - strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.488 kb on + strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.489 kb on - strand, within A4249_RS09560at 1909.490 kb on + strand, within A4249_RS09560at 1909.490 kb on + strand, within A4249_RS09560at 1909.490 kb on + strand, within A4249_RS09560at 1909.490 kb on + strand, within A4249_RS09560at 1909.490 kb on + strand, within A4249_RS09560at 1909.490 kb on + strand, within A4249_RS09560at 1909.491 kb on - strand, within A4249_RS09560at 1909.620 kb on + strand, within A4249_RS09560at 1909.620 kb on + strand, within A4249_RS09560at 1909.620 kb on + strand, within A4249_RS09560at 1909.620 kb on + strand, within A4249_RS09560at 1909.620 kb on + strand, within A4249_RS09560at 1909.621 kb on - strand, within A4249_RS09560at 1909.621 kb on - strand, within A4249_RS09560at 1909.621 kb on - strand, within A4249_RS09560at 1909.621 kb on - strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.701 kb on + strand, within A4249_RS09560at 1909.702 kb on - strand, within A4249_RS09560at 1909.702 kb on - strand, within A4249_RS09560at 1909.702 kb on - strand, within A4249_RS09560at 1909.702 kb on - strand, within A4249_RS09560at 1909.702 kb on - strand, within A4249_RS09560at 1909.702 kb on - strand, within A4249_RS09560at 1909.702 kb on - strand, within A4249_RS09560at 1909.720 kb on + strand, within A4249_RS09560at 1909.724 kb on + strand, within A4249_RS09560at 1909.724 kb on + strand, within A4249_RS09560at 1909.724 kb on + strand, within A4249_RS09560at 1909.725 kb on - strand, within A4249_RS09560at 1909.725 kb on - strand, within A4249_RS09560at 1909.755 kb on + strand, within A4249_RS09560at 1909.755 kb on + strand, within A4249_RS09560at 1909.755 kb on + strand, within A4249_RS09560at 1909.756 kb on - strand, within A4249_RS09560at 1909.756 kb on - strand, within A4249_RS09560at 1909.756 kb on - strand, within A4249_RS09560at 1909.756 kb on - strand, within A4249_RS09560at 1909.756 kb on - strand, within A4249_RS09560at 1909.780 kb on + strand, within A4249_RS09560at 1909.781 kb on - strand, within A4249_RS09560at 1909.845 kb on + strand, within A4249_RS09560at 1909.845 kb on + strand, within A4249_RS09560at 1909.845 kb on + strand, within A4249_RS09560at 1909.845 kb on + strand, within A4249_RS09560at 1909.846 kb on - strand, within A4249_RS09560at 1909.846 kb on - strand, within A4249_RS09560at 1909.846 kb on - strand, within A4249_RS09560at 1909.846 kb on - strand, within A4249_RS09560at 1909.961 kb on + strandat 1909.962 kb on - strandat 1909.962 kb on - strandat 1910.339 kb on + strand, within A4249_RS09565at 1910.339 kb on + strand, within A4249_RS09565at 1910.339 kb on + strand, within A4249_RS09565at 1910.339 kb on + strand, within A4249_RS09565at 1910.339 kb on + strand, within A4249_RS09565at 1910.339 kb on + strand, within A4249_RS09565at 1910.339 kb on + strand, within A4249_RS09565at 1910.340 kb on - strand, within A4249_RS09565at 1910.340 kb on - strand, within A4249_RS09565at 1910.340 kb on - strand, within A4249_RS09565at 1910.340 kb on - strand, within A4249_RS09565at 1910.360 kb on + strand, within A4249_RS09565at 1910.361 kb on - strand, within A4249_RS09565at 1910.418 kb on - strand, within A4249_RS09565at 1910.418 kb on - strand, within A4249_RS09565at 1910.519 kb on + strand, within A4249_RS09565at 1910.519 kb on + strand, within A4249_RS09565at 1910.848 kb on + strand, within A4249_RS09570at 1910.848 kb on + strand, within A4249_RS09570at 1910.848 kb on + strand, within A4249_RS09570at 1910.848 kb on + strand, within A4249_RS09570at 1910.848 kb on + strand, within A4249_RS09570at 1910.849 kb on - strand, within A4249_RS09570at 1910.849 kb on - strand, within A4249_RS09570at 1910.849 kb on - strand, within A4249_RS09570at 1910.849 kb on - strand, within A4249_RS09570at 1910.849 kb on - strand, within A4249_RS09570at 1910.849 kb on - strand, within A4249_RS09570at 1910.849 kb on - strand, within A4249_RS09570at 1910.851 kb on - strand, within A4249_RS09570at 1910.894 kb on - strand, within A4249_RS09570at 1910.894 kb on - strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.917 kb on + strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1910.918 kb on - strand, within A4249_RS09570at 1911.067 kb on + strand, within A4249_RS09570at 1911.068 kb on - strand, within A4249_RS09570at 1911.068 kb on - strand, within A4249_RS09570at 1911.077 kb on - strand, within A4249_RS09570at 1911.077 kb on - strand, within A4249_RS09570at 1911.077 kb on - strand, within A4249_RS09570at 1911.077 kb on - strand, within A4249_RS09570at 1911.268 kb on + strandat 1911.268 kb on + strandat 1911.268 kb on + strandat 1911.381 kb on - strand, within A4249_RS09575at 1911.381 kb on - strand, within A4249_RS09575at 1911.499 kb on + strand, within A4249_RS09575at 1911.499 kb on + strand, within A4249_RS09575at 1911.499 kb on + strand, within A4249_RS09575at 1911.500 kb on - strand, within A4249_RS09575at 1911.500 kb on - strand, within A4249_RS09575at 1911.500 kb on - strand, within A4249_RS09575at 1911.500 kb on - strand, within A4249_RS09575at 1911.500 kb on - strand, within A4249_RS09575

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,909,028 + A4249_RS09555 0.72 -0.6
1,909,028 + A4249_RS09555 0.72 +0.1
1,909,028 + A4249_RS09555 0.72 +1.3
1,909,028 + A4249_RS09555 0.72 -0.1
1,909,028 + A4249_RS09555 0.72 -0.1
1,909,029 - A4249_RS09555 0.72 -0.2
1,909,029 - A4249_RS09555 0.72 -0.2
1,909,029 - A4249_RS09555 0.72 +0.2
1,909,029 - A4249_RS09555 0.72 -0.2
1,909,029 - A4249_RS09555 0.72 -0.8
1,909,029 - A4249_RS09555 0.72 -0.2
1,909,029 - A4249_RS09555 0.72 -0.6
1,909,029 - A4249_RS09555 0.72 -0.3
1,909,029 - A4249_RS09555 0.72 +0.3
1,909,346 - A4249_RS09560 0.19 +0.8
1,909,354 + A4249_RS09560 0.20 +0.7
1,909,354 + A4249_RS09560 0.20 +0.8
1,909,354 + A4249_RS09560 0.20 -0.3
1,909,354 + A4249_RS09560 0.20 +1.8
1,909,354 + A4249_RS09560 0.20 +0.3
1,909,355 - A4249_RS09560 0.20 +0.8
1,909,355 - A4249_RS09560 0.20 -0.2
1,909,488 + A4249_RS09560 0.37 -0.6
1,909,488 + A4249_RS09560 0.37 -0.7
1,909,488 + A4249_RS09560 0.37 +0.0
1,909,488 + A4249_RS09560 0.37 -0.4
1,909,488 + A4249_RS09560 0.37 +0.1
1,909,488 + A4249_RS09560 0.37 -0.0
1,909,488 + A4249_RS09560 0.37 +1.0
1,909,488 + A4249_RS09560 0.37 +0.5
1,909,488 + A4249_RS09560 0.37 +0.0
1,909,488 + A4249_RS09560 0.37 -1.2
1,909,488 + A4249_RS09560 0.37 -0.3
1,909,488 + A4249_RS09560 0.37 +0.6
1,909,489 - A4249_RS09560 0.38 +0.4
1,909,489 - A4249_RS09560 0.38 +0.3
1,909,489 - A4249_RS09560 0.38 -1.2
1,909,489 - A4249_RS09560 0.38 +0.0
1,909,489 - A4249_RS09560 0.38 +1.0
1,909,489 - A4249_RS09560 0.38 -1.2
1,909,489 - A4249_RS09560 0.38 -1.5
1,909,489 - A4249_RS09560 0.38 +1.0
1,909,489 - A4249_RS09560 0.38 +1.5
1,909,489 - A4249_RS09560 0.38 +0.1
1,909,489 - A4249_RS09560 0.38 +1.2
1,909,489 - A4249_RS09560 0.38 -1.4
1,909,489 - A4249_RS09560 0.38 +0.8
1,909,489 - A4249_RS09560 0.38 +0.2
1,909,489 - A4249_RS09560 0.38 -0.6
1,909,489 - A4249_RS09560 0.38 -0.3
1,909,489 - A4249_RS09560 0.38 +0.1
1,909,489 - A4249_RS09560 0.38 +0.5
1,909,489 - A4249_RS09560 0.38 -0.8
1,909,489 - A4249_RS09560 0.38 +0.9
1,909,489 - A4249_RS09560 0.38 -1.1
1,909,489 - A4249_RS09560 0.38 -0.5
1,909,489 - A4249_RS09560 0.38 +0.4
1,909,489 - A4249_RS09560 0.38 -0.3
1,909,489 - A4249_RS09560 0.38 +0.8
1,909,489 - A4249_RS09560 0.38 -1.4
1,909,489 - A4249_RS09560 0.38 +1.0
1,909,489 - A4249_RS09560 0.38 +0.4
1,909,489 - A4249_RS09560 0.38 +0.2
1,909,490 + A4249_RS09560 0.38 -0.6
1,909,490 + A4249_RS09560 0.38 -0.4
1,909,490 + A4249_RS09560 0.38 -1.7
1,909,490 + A4249_RS09560 0.38 +0.4
1,909,490 + A4249_RS09560 0.38 +0.7
1,909,490 + A4249_RS09560 0.38 +0.5
1,909,491 - A4249_RS09560 0.38 -0.7
1,909,620 + A4249_RS09560 0.55 -0.7
1,909,620 + A4249_RS09560 0.55 -0.9
1,909,620 + A4249_RS09560 0.55 +1.0
1,909,620 + A4249_RS09560 0.55 +0.4
1,909,620 + A4249_RS09560 0.55 -0.8
1,909,621 - A4249_RS09560 0.55 -0.9
1,909,621 - A4249_RS09560 0.55 +1.3
1,909,621 - A4249_RS09560 0.55 +1.6
1,909,621 - A4249_RS09560 0.55 -0.2
1,909,701 + A4249_RS09560 0.66 +0.2
1,909,701 + A4249_RS09560 0.66 -0.4
1,909,701 + A4249_RS09560 0.66 +0.4
1,909,701 + A4249_RS09560 0.66 +0.6
1,909,701 + A4249_RS09560 0.66 +0.6
1,909,701 + A4249_RS09560 0.66 -0.8
1,909,701 + A4249_RS09560 0.66 -0.2
1,909,701 + A4249_RS09560 0.66 +0.3
1,909,701 + A4249_RS09560 0.66 -0.5
1,909,701 + A4249_RS09560 0.66 +0.1
1,909,701 + A4249_RS09560 0.66 +0.1
1,909,701 + A4249_RS09560 0.66 +0.6
1,909,701 + A4249_RS09560 0.66 +0.1
1,909,701 + A4249_RS09560 0.66 +0.3
1,909,701 + A4249_RS09560 0.66 +0.9
1,909,701 + A4249_RS09560 0.66 -0.5
1,909,701 + A4249_RS09560 0.66 -0.5
1,909,702 - A4249_RS09560 0.66 -1.6
1,909,702 - A4249_RS09560 0.66 -0.3
1,909,702 - A4249_RS09560 0.66 +0.8
1,909,702 - A4249_RS09560 0.66 +0.3
1,909,702 - A4249_RS09560 0.66 -0.5
1,909,702 - A4249_RS09560 0.66 -1.4
1,909,702 - A4249_RS09560 0.66 -0.2
1,909,720 + A4249_RS09560 0.68 -0.2
1,909,724 + A4249_RS09560 0.69 +1.5
1,909,724 + A4249_RS09560 0.69 +1.2
1,909,724 + A4249_RS09560 0.69 -0.5
1,909,725 - A4249_RS09560 0.69 +1.5
1,909,725 - A4249_RS09560 0.69 -0.0
1,909,755 + A4249_RS09560 0.73 +0.8
1,909,755 + A4249_RS09560 0.73 -2.2
1,909,755 + A4249_RS09560 0.73 +0.0
1,909,756 - A4249_RS09560 0.73 +0.8
1,909,756 - A4249_RS09560 0.73 -0.7
1,909,756 - A4249_RS09560 0.73 +0.1
1,909,756 - A4249_RS09560 0.73 -0.5
1,909,756 - A4249_RS09560 0.73 +0.3
1,909,780 + A4249_RS09560 0.76 +0.3
1,909,781 - A4249_RS09560 0.76 +2.3
1,909,845 + A4249_RS09560 0.85 +0.2
1,909,845 + A4249_RS09560 0.85 -0.3
1,909,845 + A4249_RS09560 0.85 -0.3
1,909,845 + A4249_RS09560 0.85 +0.8
1,909,846 - A4249_RS09560 0.85 +0.5
1,909,846 - A4249_RS09560 0.85 +0.2
1,909,846 - A4249_RS09560 0.85 -0.2
1,909,846 - A4249_RS09560 0.85 +0.6
1,909,961 + +0.0
1,909,962 - -0.5
1,909,962 - -0.3
1,910,339 + A4249_RS09565 0.55 +0.3
1,910,339 + A4249_RS09565 0.55 +0.4
1,910,339 + A4249_RS09565 0.55 +0.1
1,910,339 + A4249_RS09565 0.55 +0.3
1,910,339 + A4249_RS09565 0.55 +0.4
1,910,339 + A4249_RS09565 0.55 +0.1
1,910,339 + A4249_RS09565 0.55 +0.3
1,910,340 - A4249_RS09565 0.55 -0.2
1,910,340 - A4249_RS09565 0.55 +0.7
1,910,340 - A4249_RS09565 0.55 -0.5
1,910,340 - A4249_RS09565 0.55 +1.1
1,910,360 + A4249_RS09565 0.58 -1.3
1,910,361 - A4249_RS09565 0.58 -0.1
1,910,418 - A4249_RS09565 0.67 -0.4
1,910,418 - A4249_RS09565 0.67 -0.2
1,910,519 + A4249_RS09565 0.83 -2.0
1,910,519 + A4249_RS09565 0.83 -0.7
1,910,848 + A4249_RS09570 0.33 +1.0
1,910,848 + A4249_RS09570 0.33 -0.2
1,910,848 + A4249_RS09570 0.33 -0.1
1,910,848 + A4249_RS09570 0.33 -1.1
1,910,848 + A4249_RS09570 0.33 +0.4
1,910,849 - A4249_RS09570 0.33 -0.3
1,910,849 - A4249_RS09570 0.33 -0.3
1,910,849 - A4249_RS09570 0.33 -0.1
1,910,849 - A4249_RS09570 0.33 -0.9
1,910,849 - A4249_RS09570 0.33 +0.2
1,910,849 - A4249_RS09570 0.33 -1.6
1,910,849 - A4249_RS09570 0.33 +0.7
1,910,851 - A4249_RS09570 0.33 +0.7
1,910,894 - A4249_RS09570 0.40 -0.4
1,910,894 - A4249_RS09570 0.40 -0.8
1,910,917 + A4249_RS09570 0.44 +0.4
1,910,917 + A4249_RS09570 0.44 +0.0
1,910,917 + A4249_RS09570 0.44 +1.1
1,910,917 + A4249_RS09570 0.44 +0.3
1,910,917 + A4249_RS09570 0.44 -0.6
1,910,917 + A4249_RS09570 0.44 -0.7
1,910,917 + A4249_RS09570 0.44 +0.8
1,910,917 + A4249_RS09570 0.44 -0.2
1,910,918 - A4249_RS09570 0.44 -1.3
1,910,918 - A4249_RS09570 0.44 -1.2
1,910,918 - A4249_RS09570 0.44 +1.0
1,910,918 - A4249_RS09570 0.44 +1.6
1,910,918 - A4249_RS09570 0.44 -0.9
1,910,918 - A4249_RS09570 0.44 +0.8
1,910,918 - A4249_RS09570 0.44 -0.6
1,910,918 - A4249_RS09570 0.44 +0.2
1,911,067 + A4249_RS09570 0.68 +0.7
1,911,068 - A4249_RS09570 0.68 +0.7
1,911,068 - A4249_RS09570 0.68 -0.6
1,911,077 - A4249_RS09570 0.69 +0.0
1,911,077 - A4249_RS09570 0.69 +0.9
1,911,077 - A4249_RS09570 0.69 +1.1
1,911,077 - A4249_RS09570 0.69 -0.6
1,911,268 + -0.0
1,911,268 + +0.4
1,911,268 + -0.3
1,911,381 - A4249_RS09575 0.13 +0.2
1,911,381 - A4249_RS09575 0.13 -0.2
1,911,499 + A4249_RS09575 0.28 -0.4
1,911,499 + A4249_RS09575 0.28 -0.0
1,911,499 + A4249_RS09575 0.28 -0.3
1,911,500 - A4249_RS09575 0.28 +0.3
1,911,500 - A4249_RS09575 0.28 -0.3
1,911,500 - A4249_RS09575 0.28 -0.7
1,911,500 - A4249_RS09575 0.28 +0.4
1,911,500 - A4249_RS09575 0.28 -0.4

Or see this region's nucleotide sequence