Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08495

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08490 and A4249_RS08495 overlap by 4 nucleotidesA4249_RS08495 and A4249_RS08500 overlap by 4 nucleotidesA4249_RS08500 and A4249_RS08505 overlap by 4 nucleotidesA4249_RS08505 and A4249_RS08510 are separated by 115 nucleotides A4249_RS08490: A4249_RS08490 - monovalent cation/H+ antiporter subunit D, at 1,704,324 to 1,705,919 _RS08490 A4249_RS08495: A4249_RS08495 - Na+/H+ antiporter subunit E, at 1,705,916 to 1,706,404 _RS08495 A4249_RS08500: A4249_RS08500 - K+/H+ antiporter subunit F, at 1,706,401 to 1,706,682 _RS08500 A4249_RS08505: A4249_RS08505 - monovalent cation/H(+) antiporter subunit G, at 1,706,679 to 1,707,020 _RS08505 A4249_RS08510: A4249_RS08510 - hypothetical protein, at 1,707,136 to 1,707,858 _RS08510 Position (kb) 1705 1706 1707Strain fitness (log2 ratio) -1 0 1 2at 1704.952 kb on + strand, within A4249_RS08490at 1704.953 kb on - strand, within A4249_RS08490at 1704.961 kb on + strand, within A4249_RS08490at 1704.961 kb on + strand, within A4249_RS08490at 1704.961 kb on + strand, within A4249_RS08490at 1704.961 kb on + strand, within A4249_RS08490at 1704.961 kb on + strand, within A4249_RS08490at 1704.961 kb on + strand, within A4249_RS08490at 1704.962 kb on - strand, within A4249_RS08490at 1704.962 kb on - strand, within A4249_RS08490at 1704.962 kb on - strand, within A4249_RS08490at 1704.962 kb on - strand, within A4249_RS08490at 1705.053 kb on + strand, within A4249_RS08490at 1705.053 kb on + strand, within A4249_RS08490at 1705.053 kb on + strand, within A4249_RS08490at 1705.054 kb on - strand, within A4249_RS08490at 1705.113 kb on + strand, within A4249_RS08490at 1705.113 kb on + strand, within A4249_RS08490at 1705.113 kb on + strand, within A4249_RS08490at 1705.113 kb on + strand, within A4249_RS08490at 1705.113 kb on + strand, within A4249_RS08490at 1705.113 kb on + strand, within A4249_RS08490at 1705.113 kb on + strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.114 kb on - strand, within A4249_RS08490at 1705.213 kb on + strand, within A4249_RS08490at 1705.213 kb on + strand, within A4249_RS08490at 1705.213 kb on + strand, within A4249_RS08490at 1705.214 kb on - strand, within A4249_RS08490at 1705.350 kb on + strand, within A4249_RS08490at 1705.350 kb on + strand, within A4249_RS08490at 1705.350 kb on + strand, within A4249_RS08490at 1705.350 kb on + strand, within A4249_RS08490at 1705.350 kb on + strand, within A4249_RS08490at 1705.351 kb on - strand, within A4249_RS08490at 1705.462 kb on - strand, within A4249_RS08490at 1705.462 kb on - strand, within A4249_RS08490at 1705.842 kb on + strandat 1705.842 kb on + strandat 1705.842 kb on + strandat 1705.842 kb on + strandat 1705.842 kb on + strandat 1705.843 kb on - strandat 1705.843 kb on - strandat 1705.843 kb on - strandat 1705.884 kb on + strandat 1705.884 kb on + strandat 1705.884 kb on + strandat 1705.884 kb on + strandat 1705.885 kb on - strandat 1705.885 kb on - strandat 1705.885 kb on - strandat 1705.885 kb on - strandat 1705.885 kb on - strandat 1705.934 kb on + strandat 1705.951 kb on - strandat 1706.288 kb on + strand, within A4249_RS08495at 1706.340 kb on + strand, within A4249_RS08495at 1706.372 kb on + strandat 1706.372 kb on + strandat 1706.373 kb on - strandat 1706.533 kb on + strand, within A4249_RS08500at 1706.534 kb on - strand, within A4249_RS08500at 1706.534 kb on - strand, within A4249_RS08500at 1706.591 kb on - strand, within A4249_RS08500at 1706.591 kb on - strand, within A4249_RS08500at 1706.591 kb on - strand, within A4249_RS08500at 1706.793 kb on + strand, within A4249_RS08505at 1706.793 kb on + strand, within A4249_RS08505at 1706.793 kb on + strand, within A4249_RS08505at 1706.793 kb on + strand, within A4249_RS08505at 1706.793 kb on + strand, within A4249_RS08505at 1706.793 kb on + strand, within A4249_RS08505at 1706.793 kb on + strand, within A4249_RS08505at 1706.794 kb on - strand, within A4249_RS08505at 1706.794 kb on - strand, within A4249_RS08505at 1706.794 kb on - strand, within A4249_RS08505at 1706.794 kb on - strand, within A4249_RS08505at 1706.794 kb on - strand, within A4249_RS08505at 1706.794 kb on - strand, within A4249_RS08505at 1706.794 kb on - strand, within A4249_RS08505at 1707.127 kb on + strandat 1707.127 kb on + strandat 1707.128 kb on - strandat 1707.342 kb on + strand, within A4249_RS08510at 1707.357 kb on + strand, within A4249_RS08510at 1707.357 kb on + strand, within A4249_RS08510

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,704,952 + A4249_RS08490 0.39 -0.7
1,704,953 - A4249_RS08490 0.39 +0.0
1,704,961 + A4249_RS08490 0.40 -1.1
1,704,961 + A4249_RS08490 0.40 +0.5
1,704,961 + A4249_RS08490 0.40 -1.0
1,704,961 + A4249_RS08490 0.40 +2.0
1,704,961 + A4249_RS08490 0.40 +0.4
1,704,961 + A4249_RS08490 0.40 +0.7
1,704,962 - A4249_RS08490 0.40 +0.3
1,704,962 - A4249_RS08490 0.40 +0.3
1,704,962 - A4249_RS08490 0.40 -1.3
1,704,962 - A4249_RS08490 0.40 +1.5
1,705,053 + A4249_RS08490 0.46 -0.0
1,705,053 + A4249_RS08490 0.46 -0.2
1,705,053 + A4249_RS08490 0.46 -0.5
1,705,054 - A4249_RS08490 0.46 +0.0
1,705,113 + A4249_RS08490 0.49 -0.8
1,705,113 + A4249_RS08490 0.49 -0.6
1,705,113 + A4249_RS08490 0.49 -0.6
1,705,113 + A4249_RS08490 0.49 +1.6
1,705,113 + A4249_RS08490 0.49 -0.0
1,705,113 + A4249_RS08490 0.49 +2.1
1,705,113 + A4249_RS08490 0.49 -0.2
1,705,114 - A4249_RS08490 0.49 -0.5
1,705,114 - A4249_RS08490 0.49 +0.4
1,705,114 - A4249_RS08490 0.49 -0.5
1,705,114 - A4249_RS08490 0.49 +0.6
1,705,114 - A4249_RS08490 0.49 -0.6
1,705,114 - A4249_RS08490 0.49 +1.1
1,705,114 - A4249_RS08490 0.49 -0.2
1,705,114 - A4249_RS08490 0.49 -0.1
1,705,114 - A4249_RS08490 0.49 +0.7
1,705,114 - A4249_RS08490 0.49 -0.6
1,705,114 - A4249_RS08490 0.49 -0.6
1,705,114 - A4249_RS08490 0.49 +1.9
1,705,114 - A4249_RS08490 0.49 -0.2
1,705,114 - A4249_RS08490 0.49 -0.1
1,705,213 + A4249_RS08490 0.56 -0.5
1,705,213 + A4249_RS08490 0.56 +1.3
1,705,213 + A4249_RS08490 0.56 -1.1
1,705,214 - A4249_RS08490 0.56 -1.2
1,705,350 + A4249_RS08490 0.64 +0.4
1,705,350 + A4249_RS08490 0.64 -0.5
1,705,350 + A4249_RS08490 0.64 +0.0
1,705,350 + A4249_RS08490 0.64 -0.4
1,705,350 + A4249_RS08490 0.64 -0.1
1,705,351 - A4249_RS08490 0.64 +0.5
1,705,462 - A4249_RS08490 0.71 +0.5
1,705,462 - A4249_RS08490 0.71 -0.7
1,705,842 + -0.2
1,705,842 + +0.0
1,705,842 + -0.1
1,705,842 + -0.7
1,705,842 + -0.7
1,705,843 - +0.2
1,705,843 - -0.8
1,705,843 - -0.5
1,705,884 + -0.1
1,705,884 + -0.6
1,705,884 + -1.7
1,705,884 + -0.0
1,705,885 - -0.2
1,705,885 - +0.4
1,705,885 - -0.1
1,705,885 - +0.5
1,705,885 - -0.1
1,705,934 + -0.8
1,705,951 - -0.9
1,706,288 + A4249_RS08495 0.76 +0.2
1,706,340 + A4249_RS08495 0.87 -0.2
1,706,372 + +1.1
1,706,372 + -1.1
1,706,373 - -0.2
1,706,533 + A4249_RS08500 0.47 -1.5
1,706,534 - A4249_RS08500 0.47 +0.3
1,706,534 - A4249_RS08500 0.47 -0.1
1,706,591 - A4249_RS08500 0.67 -0.2
1,706,591 - A4249_RS08500 0.67 +0.4
1,706,591 - A4249_RS08500 0.67 +1.0
1,706,793 + A4249_RS08505 0.33 -0.5
1,706,793 + A4249_RS08505 0.33 +0.4
1,706,793 + A4249_RS08505 0.33 +0.3
1,706,793 + A4249_RS08505 0.33 +1.5
1,706,793 + A4249_RS08505 0.33 -0.0
1,706,793 + A4249_RS08505 0.33 -0.2
1,706,793 + A4249_RS08505 0.33 +0.4
1,706,794 - A4249_RS08505 0.34 -1.6
1,706,794 - A4249_RS08505 0.34 +0.1
1,706,794 - A4249_RS08505 0.34 +0.8
1,706,794 - A4249_RS08505 0.34 -0.1
1,706,794 - A4249_RS08505 0.34 -0.2
1,706,794 - A4249_RS08505 0.34 -0.5
1,706,794 - A4249_RS08505 0.34 -0.4
1,707,127 + +0.1
1,707,127 + +1.1
1,707,128 - +0.6
1,707,342 + A4249_RS08510 0.28 -0.3
1,707,357 + A4249_RS08510 0.31 -1.0
1,707,357 + A4249_RS08510 0.31 +1.3

Or see this region's nucleotide sequence