Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08050

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08045 and A4249_RS08050 are separated by 250 nucleotidesA4249_RS08050 and A4249_RS08055 are separated by 109 nucleotides A4249_RS08045: A4249_RS08045 - pentapeptide repeat-containing protein, at 1,609,223 to 1,610,110 _RS08045 A4249_RS08050: A4249_RS08050 - elongation factor Tu, at 1,610,361 to 1,611,551 _RS08050 A4249_RS08055: A4249_RS08055 - elongation factor G, at 1,611,661 to 1,613,739 _RS08055 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -2 -1 0 1 2at 1610.035 kb on + strandat 1610.036 kb on - strandat 1610.036 kb on - strandat 1610.108 kb on + strandat 1610.108 kb on + strandat 1610.109 kb on - strandat 1610.109 kb on - strandat 1610.109 kb on - strandat 1610.109 kb on - strandat 1610.204 kb on + strandat 1610.222 kb on + strandat 1610.222 kb on + strandat 1610.222 kb on + strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.297 kb on + strandat 1610.297 kb on + strandat 1610.298 kb on - strandat 1610.298 kb on - strandat 1610.298 kb on - strandat 1610.302 kb on + strandat 1610.302 kb on + strandat 1610.302 kb on + strandat 1610.302 kb on + strandat 1610.303 kb on - strandat 1610.303 kb on - strandat 1610.303 kb on - strandat 1610.303 kb on - strandat 1610.319 kb on + strandat 1610.319 kb on + strandat 1610.319 kb on + strandat 1610.319 kb on + strandat 1610.320 kb on - strandat 1610.320 kb on - strandat 1610.320 kb on - strandat 1610.363 kb on - strandat 1610.950 kb on + strand, within A4249_RS08050at 1611.557 kb on - strandat 1611.563 kb on + strandat 1611.563 kb on + strandat 1611.563 kb on + strandat 1611.564 kb on - strandat 1611.564 kb on - strandat 1611.564 kb on - strandat 1611.564 kb on - strandat 1611.564 kb on - strandat 1611.564 kb on - strandat 1611.564 kb on - strandat 1611.633 kb on - strandat 1611.633 kb on - strandat 1611.633 kb on - strandat 1611.633 kb on - strandat 1611.633 kb on - strandat 1611.633 kb on - strandat 1611.633 kb on - strandat 1611.633 kb on - strandat 1611.634 kb on + strandat 1611.635 kb on - strandat 1611.635 kb on - strandat 1611.635 kb on - strandat 1611.635 kb on - strandat 1611.635 kb on - strandat 1611.635 kb on - strandat 1611.635 kb on - strandat 1611.635 kb on - strandat 1611.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,610,035 + +1.0
1,610,036 - +0.4
1,610,036 - -0.3
1,610,108 + +0.0
1,610,108 + +0.2
1,610,109 - +0.5
1,610,109 - +0.2
1,610,109 - -0.8
1,610,109 - +0.2
1,610,204 + -0.5
1,610,222 + +0.8
1,610,222 + -0.3
1,610,222 + -1.3
1,610,223 - -0.6
1,610,223 - -0.7
1,610,223 - +0.3
1,610,223 - -0.5
1,610,223 - -0.4
1,610,297 + +0.1
1,610,297 + +1.5
1,610,298 - -0.1
1,610,298 - -0.5
1,610,298 - -0.5
1,610,302 + +0.9
1,610,302 + -0.3
1,610,302 + -1.8
1,610,302 + -1.3
1,610,303 - +0.1
1,610,303 - +0.7
1,610,303 - -0.3
1,610,303 - +0.0
1,610,319 + -0.1
1,610,319 + -0.4
1,610,319 + -0.1
1,610,319 + -0.4
1,610,320 - -0.4
1,610,320 - -1.0
1,610,320 - -0.5
1,610,363 - -0.0
1,610,950 + A4249_RS08050 0.49 +1.9
1,611,557 - -0.8
1,611,563 + +1.3
1,611,563 + +2.1
1,611,563 + +0.8
1,611,564 - -0.4
1,611,564 - -0.5
1,611,564 - +0.4
1,611,564 - +0.1
1,611,564 - +0.0
1,611,564 - +0.0
1,611,564 - +0.1
1,611,633 - +0.1
1,611,633 - +0.3
1,611,633 - +0.1
1,611,633 - +0.5
1,611,633 - -0.7
1,611,633 - +0.3
1,611,633 - -1.7
1,611,633 - -0.5
1,611,634 + -0.2
1,611,635 - -0.2
1,611,635 - +0.3
1,611,635 - -1.1
1,611,635 - -0.4
1,611,635 - +0.3
1,611,635 - +0.2
1,611,635 - +0.5
1,611,635 - +0.2
1,611,669 - -0.2

Or see this region's nucleotide sequence