Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt putA1 and repA are separated by 917 nucleotides repA and tap overlap by 8 nucleotides tap and repA2 are separated by 235 nucleotides repA2 and NIAGMN_28710 are separated by 239 nucleotides
NIAGMN_28685: putA1 - CopG family transcriptional regulator, at 44,559 to 44,837
putA1
NIAGMN_28690: repA - incFII family plasmid replication initiator RepA, at 45,755 to 46,612
repA
NIAGMN_28695: tap - RepA leader peptide Tap, at 46,605 to 46,679
tap
NIAGMN_28705: repA2 - Replication regulatory protein repA2, at 46,915 to 47,169
repA2
NIAGMN_28710: NIAGMN_28710 - W0003, at 47,409 to 47,747
_28710
Position (kb) 45
46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 44.869 kb on - strand at 44.869 kb on - strand at 44.881 kb on + strand at 44.905 kb on + strand at 44.906 kb on - strand at 44.906 kb on - strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.934 kb on + strand at 44.934 kb on + strand at 44.934 kb on + strand at 44.943 kb on + strand at 44.949 kb on + strand at 44.949 kb on + strand at 44.949 kb on + strand at 44.950 kb on - strand at 44.950 kb on - strand at 44.950 kb on - strand at 44.950 kb on - strand at 44.960 kb on + strand at 44.960 kb on + strand at 44.961 kb on - strand at 44.982 kb on - strand at 45.063 kb on + strand at 45.063 kb on + strand at 45.064 kb on - strand at 45.115 kb on - strand at 45.115 kb on - strand at 45.115 kb on - strand at 45.146 kb on + strand at 45.146 kb on + strand at 45.157 kb on - strand at 45.271 kb on + strand at 45.272 kb on - strand at 45.272 kb on - strand at 45.393 kb on + strand at 45.393 kb on + strand at 45.393 kb on + strand at 45.394 kb on - strand at 45.394 kb on - strand at 45.394 kb on - strand at 45.394 kb on - strand at 45.394 kb on - strand at 45.394 kb on - strand at 45.447 kb on - strand at 45.450 kb on + strand at 45.450 kb on + strand at 45.459 kb on + strand at 45.468 kb on + strand at 45.468 kb on + strand at 45.503 kb on + strand at 45.541 kb on + strand at 45.646 kb on + strand at 45.647 kb on - strand at 45.976 kb on + strand, within repA at 45.976 kb on + strand, within repA at 46.185 kb on + strand, within repA at 46.185 kb on + strand, within repA at 46.186 kb on - strand, within repA at 46.186 kb on - strand, within repA at 46.186 kb on - strand, within repA at 46.206 kb on + strand, within repA at 46.218 kb on + strand, within repA at 46.578 kb on - strand at 46.590 kb on + strand at 46.591 kb on - strand at 46.591 kb on - strand at 46.591 kb on - strand at 46.627 kb on - strand, within tap at 46.680 kb on - strand at 46.682 kb on - strand at 46.685 kb on + strand at 46.716 kb on + strand at 46.723 kb on + strand at 46.723 kb on + strand at 46.799 kb on - strand at 46.832 kb on - strand at 46.875 kb on - strand at 46.905 kb on - strand at 46.945 kb on + strand, within repA2 at 47.014 kb on - strand, within repA2 at 47.014 kb on - strand, within repA2 at 47.015 kb on + strand, within repA2 at 47.015 kb on + strand, within repA2 at 47.015 kb on + strand, within repA2 at 47.015 kb on + strand, within repA2 at 47.016 kb on - strand, within repA2 at 47.016 kb on - strand, within repA2 at 47.016 kb on - strand, within repA2 at 47.016 kb on - strand, within repA2 at 47.016 kb on - strand, within repA2 at 47.016 kb on - strand, within repA2 at 47.038 kb on + strand, within repA2 at 47.039 kb on - strand, within repA2 at 47.039 kb on - strand, within repA2 at 47.039 kb on - strand, within repA2 at 47.039 kb on - strand, within repA2 at 47.039 kb on - strand, within repA2 at 47.039 kb on - strand, within repA2 at 47.039 kb on - strand, within repA2 at 47.062 kb on - strand, within repA2 at 47.062 kb on - strand, within repA2 at 47.117 kb on + strand, within repA2 at 47.118 kb on - strand, within repA2 at 47.118 kb on - strand, within repA2 at 47.118 kb on - strand, within repA2 at 47.183 kb on + strand at 47.187 kb on + strand at 47.187 kb on + strand at 47.187 kb on + strand at 47.188 kb on - strand at 47.188 kb on - strand at 47.188 kb on - strand at 47.213 kb on - strand at 47.213 kb on - strand at 47.213 kb on - strand at 47.215 kb on + strand at 47.216 kb on - strand at 47.287 kb on - strand at 47.287 kb on - strand at 47.297 kb on - strand at 47.306 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.319 kb on - strand at 47.319 kb on - strand at 47.321 kb on + strand at 47.322 kb on - strand at 47.334 kb on + strand at 47.335 kb on - strand at 47.414 kb on + strand at 47.415 kb on - strand at 47.415 kb on - strand at 47.415 kb on - strand at 47.415 kb on - strand at 47.450 kb on + strand, within NIAGMN_28710 at 47.450 kb on + strand, within NIAGMN_28710 at 47.547 kb on - strand, within NIAGMN_28710 at 47.572 kb on - strand, within NIAGMN_28710 at 47.572 kb on - strand, within NIAGMN_28710 at 47.587 kb on + strand, within NIAGMN_28710 at 47.588 kb on - strand, within NIAGMN_28710 at 47.604 kb on + strand, within NIAGMN_28710 at 47.605 kb on - strand, within NIAGMN_28710 at 47.605 kb on - strand, within NIAGMN_28710
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 44,869 - +1.4 44,869 - -1.7 44,881 + +1.6 44,905 + -3.1 44,906 - -0.9 44,906 - +0.3 44,924 + +0.7 44,924 + -1.0 44,924 + +0.5 44,924 + -1.8 44,924 + +1.9 44,924 + +3.4 44,924 + +0.3 44,925 - -0.6 44,925 - -1.7 44,925 - +2.0 44,925 - -1.5 44,925 - -0.7 44,925 - +1.1 44,934 + +2.5 44,934 + +2.1 44,934 + -2.3 44,943 + +0.1 44,949 + +1.0 44,949 + +0.8 44,949 + +1.4 44,950 - +0.9 44,950 - -3.4 44,950 - +1.7 44,950 - -0.2 44,960 + -1.8 44,960 + -0.7 44,961 - +2.1 44,982 - -1.2 45,063 + +1.1 45,063 + +1.2 45,064 - +1.4 45,115 - -2.7 45,115 - -0.3 45,115 - -1.5 45,146 + +0.3 45,146 + -3.7 45,157 - +1.1 45,271 + -0.1 45,272 - -0.7 45,272 - -0.4 45,393 + +2.1 45,393 + +0.6 45,393 + +1.2 45,394 - +2.5 45,394 - +0.9 45,394 - +1.6 45,394 - -1.4 45,394 - -2.7 45,394 - +0.3 45,447 - -0.6 45,450 + -1.7 45,450 + -1.9 45,459 + -0.8 45,468 + -1.7 45,468 + -0.6 45,503 + +0.9 45,541 + -1.5 45,646 + -1.1 45,647 - +1.9 45,976 + repA NIAGMN_28690 0.26 -2.4 45,976 + repA NIAGMN_28690 0.26 -0.8 46,185 + repA NIAGMN_28690 0.50 -0.4 46,185 + repA NIAGMN_28690 0.50 -0.9 46,186 - repA NIAGMN_28690 0.50 -1.2 46,186 - repA NIAGMN_28690 0.50 +2.0 46,186 - repA NIAGMN_28690 0.50 +0.3 46,206 + repA NIAGMN_28690 0.53 +0.5 46,218 + repA NIAGMN_28690 0.54 -0.2 46,578 - +2.4 46,590 + -1.1 46,591 - +1.6 46,591 - -0.9 46,591 - -2.4 46,627 - tap NIAGMN_28695 0.29 -0.1 46,680 - +1.1 46,682 - -0.3 46,685 + -0.8 46,716 + +1.3 46,723 + -0.1 46,723 + -0.1 46,799 - -2.9 46,832 - +1.0 46,875 - -2.5 46,905 - -0.5 46,945 + repA2 NIAGMN_28705 0.12 -0.7 47,014 - repA2 NIAGMN_28705 0.39 -0.6 47,014 - repA2 NIAGMN_28705 0.39 -0.6 47,015 + repA2 NIAGMN_28705 0.39 -1.1 47,015 + repA2 NIAGMN_28705 0.39 +0.6 47,015 + repA2 NIAGMN_28705 0.39 -1.2 47,015 + repA2 NIAGMN_28705 0.39 +0.2 47,016 - repA2 NIAGMN_28705 0.40 -0.5 47,016 - repA2 NIAGMN_28705 0.40 -2.8 47,016 - repA2 NIAGMN_28705 0.40 -2.1 47,016 - repA2 NIAGMN_28705 0.40 -1.9 47,016 - repA2 NIAGMN_28705 0.40 -1.1 47,016 - repA2 NIAGMN_28705 0.40 -2.4 47,038 + repA2 NIAGMN_28705 0.48 -2.4 47,039 - repA2 NIAGMN_28705 0.49 +0.4 47,039 - repA2 NIAGMN_28705 0.49 +0.4 47,039 - repA2 NIAGMN_28705 0.49 -2.2 47,039 - repA2 NIAGMN_28705 0.49 +1.0 47,039 - repA2 NIAGMN_28705 0.49 -0.6 47,039 - repA2 NIAGMN_28705 0.49 -0.2 47,039 - repA2 NIAGMN_28705 0.49 -2.9 47,062 - repA2 NIAGMN_28705 0.58 +0.1 47,062 - repA2 NIAGMN_28705 0.58 -0.9 47,117 + repA2 NIAGMN_28705 0.79 -3.1 47,118 - repA2 NIAGMN_28705 0.80 -4.1 47,118 - repA2 NIAGMN_28705 0.80 -1.7 47,118 - repA2 NIAGMN_28705 0.80 +0.9 47,183 + -1.2 47,187 + -0.7 47,187 + -0.5 47,187 + -4.5 47,188 - +1.8 47,188 - +1.6 47,188 - +1.2 47,213 - +1.5 47,213 - -1.1 47,213 - -2.5 47,215 + -2.9 47,216 - -0.2 47,287 - -0.0 47,287 - -0.3 47,297 - -2.6 47,306 + +1.0 47,318 + +0.2 47,318 + +1.2 47,318 + -1.8 47,318 + +0.7 47,318 + +2.1 47,318 + +0.8 47,318 + +1.0 47,319 - -0.2 47,319 - +0.1 47,321 + -0.1 47,322 - -0.7 47,334 + +0.7 47,335 - +0.3 47,414 + +0.9 47,415 - +0.4 47,415 - -3.2 47,415 - +0.9 47,415 - -1.2 47,450 + NIAGMN_28710 0.12 +2.3 47,450 + NIAGMN_28710 0.12 -1.7 47,547 - NIAGMN_28710 0.41 -1.2 47,572 - NIAGMN_28710 0.48 +0.3 47,572 - NIAGMN_28710 0.48 +0.7 47,587 + NIAGMN_28710 0.53 +1.3 47,588 - NIAGMN_28710 0.53 -1.9 47,604 + NIAGMN_28710 0.58 +0.4 47,605 - NIAGMN_28710 0.58 -0.1 47,605 - NIAGMN_28710 0.58 -0.1
Or see this region's nucleotide sequence