Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28060

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_28050 and tnpB are separated by 49 nucleotidestnpB and tnpB overlap by 4 nucleotidestnpB and tfaX are separated by 75 nucleotidestfaX and ybcY are separated by 56 nucleotides NIAGMN_28050: NIAGMN_28050 - IS66-like element ISEc8 family transposase, at 5,434,587 to 5,436,125 _28050 NIAGMN_28055: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 5,436,175 to 5,436,522 tnpB NIAGMN_28060: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 5,436,519 to 5,436,899 tnpB NIAGMN_28065: tfaX - Protein TfaX, at 5,436,975 to 5,437,223 tfaX NIAGMN_28070: ybcY - Putative uncharacterized protein YbcY, at 5,437,280 to 5,437,948 ybcY Position (kb) 5436 5437Strain fitness (log2 ratio) -2 -1 0 1at 5437.004 kb on + strand, within tfaXat 5437.109 kb on + strand, within tfaXat 5437.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,437,004 + tfaX NIAGMN_28065 0.12 +0.3
5,437,109 + tfaX NIAGMN_28065 0.54 -2.3
5,437,337 - +0.2

Or see this region's nucleotide sequence