Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycgM and ycgL are separated by 71 nucleotides ycgL and NIAGMN_27990 are separated by 11 nucleotides NIAGMN_27990 and NIAGMN_27995 are separated by 70 nucleotides NIAGMN_27995 and ycgJ are separated by 102 nucleotides ycgJ and minC are separated by 520 nucleotides
NIAGMN_27980: ycgM - fumarylacetoacetate hydrolase family protein, at 5,423,565 to 5,424,224
ycgM
NIAGMN_27985: ycgL - Protein YcgL, at 5,424,296 to 5,424,589
ycgL
NIAGMN_27990: NIAGMN_27990 - hypothetical protein, at 5,424,601 to 5,424,759
_27990
NIAGMN_27995: NIAGMN_27995 - inhibitor of g-type lysozyme, at 5,424,830 to 5,425,231
_27995
NIAGMN_28000: ycgJ - Uncharacterized protein YcgJ, at 5,425,334 to 5,425,702
ycgJ
NIAGMN_28005: minC - septum site-determining protein MinC, at 5,426,223 to 5,426,918
minC
Position (kb) 5424
5425
5426 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5424.137 kb on + strand, within ycgM at 5424.138 kb on - strand, within ycgM at 5424.149 kb on - strand, within ycgM at 5424.173 kb on + strand at 5424.221 kb on - strand at 5424.242 kb on - strand at 5424.251 kb on - strand at 5424.603 kb on - strand at 5424.700 kb on - strand, within NIAGMN_27990 at 5424.701 kb on + strand, within NIAGMN_27990 at 5424.702 kb on - strand, within NIAGMN_27990 at 5424.851 kb on - strand at 5424.980 kb on - strand, within NIAGMN_27995 at 5424.980 kb on - strand, within NIAGMN_27995 at 5424.984 kb on - strand, within NIAGMN_27995 at 5424.985 kb on + strand, within NIAGMN_27995 at 5424.985 kb on + strand, within NIAGMN_27995 at 5424.985 kb on + strand, within NIAGMN_27995 at 5424.986 kb on - strand, within NIAGMN_27995 at 5424.986 kb on - strand, within NIAGMN_27995 at 5425.349 kb on - strand at 5425.702 kb on + strand at 5425.736 kb on - strand at 5425.787 kb on - strand at 5426.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 5,424,137 + ycgM NIAGMN_27980 0.87 +0.3 5,424,138 - ycgM NIAGMN_27980 0.87 +0.4 5,424,149 - ycgM NIAGMN_27980 0.88 +1.0 5,424,173 + +2.8 5,424,221 - -1.4 5,424,242 - -1.6 5,424,251 - +0.5 5,424,603 - +2.5 5,424,700 - NIAGMN_27990 0.62 -0.8 5,424,701 + NIAGMN_27990 0.63 +0.5 5,424,702 - NIAGMN_27990 0.64 +2.4 5,424,851 - -0.1 5,424,980 - NIAGMN_27995 0.37 -0.3 5,424,980 - NIAGMN_27995 0.37 +0.3 5,424,984 - NIAGMN_27995 0.38 -0.3 5,424,985 + NIAGMN_27995 0.39 -1.6 5,424,985 + NIAGMN_27995 0.39 -2.5 5,424,985 + NIAGMN_27995 0.39 +0.5 5,424,986 - NIAGMN_27995 0.39 -0.1 5,424,986 - NIAGMN_27995 0.39 +2.6 5,425,349 - +1.4 5,425,702 + -0.4 5,425,736 - -1.1 5,425,787 - -0.6 5,426,163 + -1.2
Or see this region's nucleotide sequence