Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27075

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_27055 and NIAGMN_27065 are separated by 188 nucleotidesNIAGMN_27065 and NIAGMN_27070 are separated by 115 nucleotidesNIAGMN_27070 and NIAGMN_27075 overlap by 4 nucleotidesNIAGMN_27075 and NIAGMN_27080 are separated by 35 nucleotidesNIAGMN_27080 and NIAGMN_27085 are separated by 48 nucleotidesNIAGMN_27085 and NIAGMN_27090 are separated by 56 nucleotides NIAGMN_27055: NIAGMN_27055 - protein hokC, at 5,264,152 to 5,264,364 _27055 NIAGMN_27065: NIAGMN_27065 - hypothetical protein, at 5,264,553 to 5,264,657 _27065 NIAGMN_27070: NIAGMN_27070 - DUF551 domain-containing protein, at 5,264,773 to 5,265,135 _27070 NIAGMN_27075: NIAGMN_27075 - hypothetical protein, at 5,265,132 to 5,265,503 _27075 NIAGMN_27080: NIAGMN_27080 - hypothetical protein, at 5,265,539 to 5,265,751 _27080 NIAGMN_27085: NIAGMN_27085 - hypothetical protein, at 5,265,800 to 5,266,156 _27085 NIAGMN_27090: NIAGMN_27090 - DUF977 domain-containing protein, at 5,266,213 to 5,266,608 _27090 Position (kb) 5265 5266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5264.364 kb on + strandat 5264.364 kb on + strandat 5264.364 kb on + strandat 5264.368 kb on + strandat 5265.758 kb on - strandat 5265.915 kb on - strand, within NIAGMN_27085at 5266.149 kb on - strandat 5266.391 kb on - strand, within NIAGMN_27090

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,264,364 + -0.6
5,264,364 + -4.4
5,264,364 + -0.4
5,264,368 + +0.8
5,265,758 - +0.7
5,265,915 - NIAGMN_27085 0.32 -2.7
5,266,149 - +1.9
5,266,391 - NIAGMN_27090 0.45 +0.4

Or see this region's nucleotide sequence