Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25150

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydfI and ydfZ are separated by 35 nucleotidesydfZ and ydfH are separated by 176 nucleotidesydfH and ydfG are separated by 88 nucleotides NIAGMN_25145: ydfI - Uncharacterized oxidoreductase YdfI, at 4,889,092 to 4,890,552 ydfI NIAGMN_25150: ydfZ - Putative selenoprotein YdfZ, at 4,890,588 to 4,890,791 ydfZ NIAGMN_25155: ydfH - DNA-binding transcriptional regulator YdfH, at 4,890,968 to 4,891,654 ydfH NIAGMN_25160: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 4,891,743 to 4,892,489 ydfG Position (kb) 4890 4891Strain fitness (log2 ratio) -2 -1 0 1at 4889.730 kb on + strand, within ydfIat 4890.494 kb on - strandat 4890.494 kb on - strandat 4890.651 kb on + strand, within ydfZat 4890.832 kb on - strandat 4891.113 kb on - strand, within ydfHat 4891.150 kb on + strand, within ydfHat 4891.435 kb on - strand, within ydfH

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,889,730 + ydfI NIAGMN_25145 0.44 -2.1
4,890,494 - -0.6
4,890,494 - -0.5
4,890,651 + ydfZ NIAGMN_25150 0.31 +0.3
4,890,832 - -1.6
4,891,113 - ydfH NIAGMN_25155 0.21 -1.8
4,891,150 + ydfH NIAGMN_25155 0.26 -0.0
4,891,435 - ydfH NIAGMN_25155 0.68 -0.3

Or see this region's nucleotide sequence