Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22995 and sodC are separated by 190 nucleotides sodC and NIAGMN_23005 are separated by 133 nucleotides NIAGMN_23005 and lomR are separated by 67 nucleotides lomR and NIAGMN_23015 are separated by 64 nucleotides
NIAGMN_22995: NIAGMN_22995 - tail assembly protein, at 4,523,068 to 4,523,649
_22995
NIAGMN_23000: sodC - superoxide dismutase [Cu-Zn] SodC, at 4,523,840 to 4,524,367
sodC
NIAGMN_23005: NIAGMN_23005 - phage tail protein, at 4,524,501 to 4,527,974
_23005
NIAGMN_23010: lomR - Ail/Lom family protein, at 4,528,042 to 4,528,641
lomR
NIAGMN_23015: NIAGMN_23015 - phage tail protein, at 4,528,706 to 4,530,019
_23015
Position (kb) 4524
4525
4526
4527
4528 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4524.500 kb on + strand at 4524.682 kb on + strand at 4524.682 kb on + strand at 4526.557 kb on - strand, within NIAGMN_23005 at 4526.586 kb on + strand, within NIAGMN_23005 at 4527.113 kb on - strand, within NIAGMN_23005 at 4527.165 kb on + strand, within NIAGMN_23005 at 4527.165 kb on + strand, within NIAGMN_23005 at 4527.165 kb on + strand, within NIAGMN_23005 at 4527.204 kb on + strand, within NIAGMN_23005 at 4527.205 kb on - strand, within NIAGMN_23005 at 4527.262 kb on + strand, within NIAGMN_23005 at 4527.262 kb on + strand, within NIAGMN_23005
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,524,500 + +1.6 4,524,682 + -0.4 4,524,682 + -2.9 4,526,557 - NIAGMN_23005 0.59 +0.8 4,526,586 + NIAGMN_23005 0.60 -0.7 4,527,113 - NIAGMN_23005 0.75 +0.5 4,527,165 + NIAGMN_23005 0.77 -1.4 4,527,165 + NIAGMN_23005 0.77 -1.6 4,527,165 + NIAGMN_23005 0.77 -2.4 4,527,204 + NIAGMN_23005 0.78 +1.1 4,527,205 - NIAGMN_23005 0.78 +0.3 4,527,262 + NIAGMN_23005 0.79 -1.4 4,527,262 + NIAGMN_23005 0.79 +0.0
Or see this region's nucleotide sequence