Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23000

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrri1 and NIAGMN_22995 overlap by 4 nucleotidesNIAGMN_22995 and sodC are separated by 190 nucleotidessodC and NIAGMN_23005 are separated by 133 nucleotides NIAGMN_22990: rri1 - phage tail protein, at 4,522,328 to 4,523,071 rri1 NIAGMN_22995: NIAGMN_22995 - tail assembly protein, at 4,523,068 to 4,523,649 _22995 NIAGMN_23000: sodC - superoxide dismutase [Cu-Zn] SodC, at 4,523,840 to 4,524,367 sodC NIAGMN_23005: NIAGMN_23005 - phage tail protein, at 4,524,501 to 4,527,974 _23005 Position (kb) 4523 4524 4525Strain fitness (log2 ratio) -3 -2 -1 0 1at 4524.500 kb on + strandat 4524.682 kb on + strandat 4524.682 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,524,500 + +1.6
4,524,682 + -0.4
4,524,682 + -2.9

Or see this region's nucleotide sequence