Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22565 and NIAGMN_22570 are separated by 220 nucleotides NIAGMN_22570 and NIAGMN_22575 are separated by 15 nucleotides NIAGMN_22575 and rssA are separated by 135 nucleotides
NIAGMN_22565: NIAGMN_22565 - DUF932 domain-containing protein, at 4,452,163 to 4,452,984
_22565
NIAGMN_22570: NIAGMN_22570 - hypothetical protein, at 4,453,205 to 4,453,615
_22570
NIAGMN_22575: NIAGMN_22575 - hypothetical protein, at 4,453,631 to 4,454,314
_22575
NIAGMN_22580: rssA - phospholipase, at 4,454,450 to 4,455,520
rssA
Position (kb) 4453
4454
4455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4452.845 kb on + strand, within NIAGMN_22565 at 4452.846 kb on - strand, within NIAGMN_22565 at 4453.024 kb on + strand at 4453.025 kb on - strand at 4453.087 kb on - strand at 4453.157 kb on - strand at 4453.176 kb on - strand at 4453.213 kb on + strand at 4453.393 kb on - strand, within NIAGMN_22570 at 4453.393 kb on - strand, within NIAGMN_22570 at 4453.436 kb on - strand, within NIAGMN_22570 at 4453.436 kb on - strand, within NIAGMN_22570 at 4453.442 kb on - strand, within NIAGMN_22570 at 4453.637 kb on - strand at 4453.767 kb on + strand, within NIAGMN_22575 at 4453.767 kb on + strand, within NIAGMN_22575 at 4453.879 kb on + strand, within NIAGMN_22575 at 4454.197 kb on - strand, within NIAGMN_22575 at 4454.282 kb on - strand at 4454.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,452,845 + NIAGMN_22565 0.83 -1.7 4,452,846 - NIAGMN_22565 0.83 -2.4 4,453,024 + -2.1 4,453,025 - +1.2 4,453,087 - +1.2 4,453,157 - +0.4 4,453,176 - -0.8 4,453,213 + +2.2 4,453,393 - NIAGMN_22570 0.46 -0.3 4,453,393 - NIAGMN_22570 0.46 -3.4 4,453,436 - NIAGMN_22570 0.56 +1.3 4,453,436 - NIAGMN_22570 0.56 -2.0 4,453,442 - NIAGMN_22570 0.58 -3.4 4,453,637 - +1.6 4,453,767 + NIAGMN_22575 0.20 +1.7 4,453,767 + NIAGMN_22575 0.20 -2.6 4,453,879 + NIAGMN_22575 0.36 +0.4 4,454,197 - NIAGMN_22575 0.83 -0.3 4,454,282 - -1.0 4,454,373 - +0.9
Or see this region's nucleotide sequence