Strain Fitness in Escherichia coli ECRC102 around NIAGMN_19870

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,924,373	+				+1.1
3,924,446	-				+0.6
3,924,464	+				+0.1
3,924,464	+				-1.2
3,924,465	-				+1.6
3,924,467	+				+0.6
3,924,517	+				+0.7
3,924,518	-				-3.0
3,924,626	-	hemF	NIAGMN_19865	0.20	-0.5
3,924,640	+	hemF	NIAGMN_19865	0.22	-1.4
3,924,684	-	hemF	NIAGMN_19865	0.27	-2.6
3,924,684	-	hemF	NIAGMN_19865	0.27	+1.5
3,924,706	+	hemF	NIAGMN_19865	0.29	+0.4
3,924,706	+	hemF	NIAGMN_19865	0.29	+1.0
3,924,707	-	hemF	NIAGMN_19865	0.29	-0.3
3,924,707	-	hemF	NIAGMN_19865	0.29	+0.4
3,924,707	-	hemF	NIAGMN_19865	0.29	+0.7
3,924,718	+	hemF	NIAGMN_19865	0.30	+0.6
3,924,740	+	hemF	NIAGMN_19865	0.33	+0.7
3,924,741	-	hemF	NIAGMN_19865	0.33	+1.2
3,924,741	-	hemF	NIAGMN_19865	0.33	+1.1
3,924,774	+	hemF	NIAGMN_19865	0.37	-2.2
3,924,774	+	hemF	NIAGMN_19865	0.37	-0.8
3,924,775	-	hemF	NIAGMN_19865	0.37	+0.3
3,924,775	-	hemF	NIAGMN_19865	0.37	+0.7
3,924,830	-	hemF	NIAGMN_19865	0.43	-1.2
3,924,830	-	hemF	NIAGMN_19865	0.43	-0.4
3,924,836	-	hemF	NIAGMN_19865	0.44	+0.4
3,924,875	+	hemF	NIAGMN_19865	0.48	-3.2
3,924,876	-	hemF	NIAGMN_19865	0.48	-0.0
3,924,940	+	hemF	NIAGMN_19865	0.55	-0.7
3,924,941	-	hemF	NIAGMN_19865	0.55	+2.3
3,925,042	+	hemF	NIAGMN_19865	0.66	-1.8
3,925,043	-	hemF	NIAGMN_19865	0.67	+0.1
3,925,043	-	hemF	NIAGMN_19865	0.67	-0.1
3,925,043	-	hemF	NIAGMN_19865	0.67	+0.5
3,925,063	-	hemF	NIAGMN_19865	0.69	-1.0
3,925,208	+	hemF	NIAGMN_19865	0.85	+2.1
3,925,209	-	hemF	NIAGMN_19865	0.85	+0.0
3,925,241	+	hemF	NIAGMN_19865	0.89	-0.6
3,925,241	+	hemF	NIAGMN_19865	0.89	+0.0
3,925,242	-	hemF	NIAGMN_19865	0.89	+0.0
3,925,242	-	hemF	NIAGMN_19865	0.89	+1.2
3,925,242	-	hemF	NIAGMN_19865	0.89	+1.5
3,925,343	+				-0.4
3,925,393	+				-0.8
3,925,393	+				-0.7
3,925,568	+	amiA	NIAGMN_19870	0.25	+0.4
3,925,568	+	amiA	NIAGMN_19870	0.25	+0.8
3,925,596	-	amiA	NIAGMN_19870	0.29	-1.0
3,925,628	+	amiA	NIAGMN_19870	0.32	+1.5
3,925,665	+	amiA	NIAGMN_19870	0.37	-2.1
3,925,666	-	amiA	NIAGMN_19870	0.37	+2.5
3,925,732	+	amiA	NIAGMN_19870	0.44	+0.6
3,925,733	-	amiA	NIAGMN_19870	0.44	+0.3
3,925,749	-	amiA	NIAGMN_19870	0.46	+0.9
3,925,829	+	amiA	NIAGMN_19870	0.55	+0.2
3,925,850	+	amiA	NIAGMN_19870	0.58	+1.9
3,925,906	-	amiA	NIAGMN_19870	0.64	+0.7
3,925,929	-	amiA	NIAGMN_19870	0.67	+2.4
3,926,197	-				+0.7
3,926,205	-				+1.0
3,926,252	-				-0.2
3,926,252	-				+0.7
3,926,301	+				-2.0
3,926,365	+				+1.3
3,926,366	-				-0.0
3,926,426	+				+0.8
3,926,426	+				-0.1
3,926,537	+	ypeA	NIAGMN_19875	0.25	-0.1
3,926,537	+	ypeA	NIAGMN_19875	0.25	+1.9
3,926,781	+	ypeA	NIAGMN_19875	0.82	-1.1
3,926,781	+	ypeA	NIAGMN_19875	0.82	-2.6
3,926,850	+				-2.6
3,926,873	-				-1.4
3,926,921	+	yfeZ	NIAGMN_19880	0.18	+1.4
3,926,982	+	yfeZ	NIAGMN_19880	0.31	+0.0
3,927,115	+	yfeZ	NIAGMN_19880	0.61	+0.2
3,927,146	+	yfeZ	NIAGMN_19880	0.68	-1.4
3,927,146	+	yfeZ	NIAGMN_19880	0.68	+0.8