Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16805

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,320,445	+	hybD	NIAGMN_16790	0.72	-0.1
3,320,590	+				+0.4
3,320,591	-				-0.8
3,320,623	+				-0.1
3,320,697	+	hybE	NIAGMN_16795	0.25	+0.0
3,320,697	+	hybE	NIAGMN_16795	0.25	-0.1
3,320,698	-	hybE	NIAGMN_16795	0.25	-2.4
3,320,712	-	hybE	NIAGMN_16795	0.28	+0.4
3,320,890	-	hybE	NIAGMN_16795	0.64	-2.1
3,320,890	-	hybE	NIAGMN_16795	0.64	-1.3
3,320,927	+	hybE	NIAGMN_16795	0.72	+0.6
3,320,927	+	hybE	NIAGMN_16795	0.72	+1.3
3,320,927	+	hybE	NIAGMN_16795	0.72	-0.3
3,320,927	+	hybE	NIAGMN_16795	0.72	+0.4
3,320,927	+	hybE	NIAGMN_16795	0.72	-2.7
3,320,927	+	hybE	NIAGMN_16795	0.72	-0.9
3,320,927	+	hybE	NIAGMN_16795	0.72	-0.4
3,320,928	-	hybE	NIAGMN_16795	0.72	-0.4
3,320,928	-	hybE	NIAGMN_16795	0.72	-0.2
3,321,007	+	hybE	NIAGMN_16795	0.88	+0.5
3,321,007	+	hybE	NIAGMN_16795	0.88	-2.2
3,321,007	+	hybE	NIAGMN_16795	0.88	-0.2
3,321,008	-	hybE	NIAGMN_16795	0.88	-0.6
3,321,008	-	hybE	NIAGMN_16795	0.88	+1.5
3,321,242	+	hypA	NIAGMN_16800	0.54	+0.4
3,321,242	+	hypA	NIAGMN_16800	0.54	-0.6
3,321,243	-	hypA	NIAGMN_16800	0.54	-3.3
3,321,243	-	hypA	NIAGMN_16800	0.54	+0.2
3,321,243	-	hypA	NIAGMN_16800	0.54	+0.3
3,321,247	-	hypA	NIAGMN_16800	0.55	-0.5
3,321,247	-	hypA	NIAGMN_16800	0.55	-0.8
3,321,255	+	hypA	NIAGMN_16800	0.58	+0.3
3,321,256	-	hypA	NIAGMN_16800	0.58	-0.6
3,321,385	-				-0.7
3,321,407	+				+1.0
3,321,407	+				+0.1
3,321,408	-				+1.7
3,321,417	+				-0.4
3,321,418	-				+1.0
3,321,482	+	hybG	NIAGMN_16805	0.28	+0.4
3,321,483	-	hybG	NIAGMN_16805	0.29	-1.6
3,321,483	-	hybG	NIAGMN_16805	0.29	-1.1
3,321,489	+	hybG	NIAGMN_16805	0.31	-1.6
3,321,489	+	hybG	NIAGMN_16805	0.31	+0.5
3,321,528	+	hybG	NIAGMN_16805	0.47	+2.1
3,321,529	-	hybG	NIAGMN_16805	0.47	+0.0
3,321,563	+	hybG	NIAGMN_16805	0.61	+0.4
3,321,564	-	hybG	NIAGMN_16805	0.61	-0.6
3,321,618	-	hybG	NIAGMN_16805	0.83	+0.2
3,321,618	-	hybG	NIAGMN_16805	0.83	-1.3
3,321,618	-	hybG	NIAGMN_16805	0.83	+1.0
3,321,648	+				+0.8
3,321,648	+				+0.1
3,321,665	+				-0.3
3,321,665	+				-0.1
3,321,666	-				+1.6
3,321,675	-				-0.4
3,321,684	-				+0.8
3,321,684	-				-0.1
3,321,798	-				-0.0
3,321,798	-				+0.2
3,321,798	-				+0.3
3,321,798	-				+1.1
3,321,882	-	yghU	NIAGMN_16815	0.11	-0.2
3,321,882	-	yghU	NIAGMN_16815	0.11	-2.0
3,321,942	-	yghU	NIAGMN_16815	0.18	+2.0
3,321,943	+	yghU	NIAGMN_16815	0.18	+0.2
3,321,943	+	yghU	NIAGMN_16815	0.18	-1.9
3,321,976	+	yghU	NIAGMN_16815	0.22	-0.7
3,321,977	-	yghU	NIAGMN_16815	0.22	+1.4
3,321,977	-	yghU	NIAGMN_16815	0.22	-0.6
3,321,977	-	yghU	NIAGMN_16815	0.22	+1.9
3,321,977	-	yghU	NIAGMN_16815	0.22	-0.6
3,321,977	-	yghU	NIAGMN_16815	0.22	+1.3
3,322,036	+	yghU	NIAGMN_16815	0.29	+1.6
3,322,036	+	yghU	NIAGMN_16815	0.29	-0.1
3,322,036	+	yghU	NIAGMN_16815	0.29	-0.3
3,322,037	-	yghU	NIAGMN_16815	0.29	-0.7
3,322,037	-	yghU	NIAGMN_16815	0.29	+0.6
3,322,037	-	yghU	NIAGMN_16815	0.29	-2.1
3,322,058	+	yghU	NIAGMN_16815	0.32	+0.5
3,322,058	+	yghU	NIAGMN_16815	0.32	+0.8
3,322,058	+	yghU	NIAGMN_16815	0.32	-2.5
3,322,059	-	yghU	NIAGMN_16815	0.32	+0.3
3,322,059	-	yghU	NIAGMN_16815	0.32	-2.7
3,322,156	+	yghU	NIAGMN_16815	0.43	-2.9
3,322,156	+	yghU	NIAGMN_16815	0.43	-0.7
3,322,156	+	yghU	NIAGMN_16815	0.43	+1.7
3,322,200	+	yghU	NIAGMN_16815	0.48	+1.2
3,322,259	-	yghU	NIAGMN_16815	0.55	-0.4
3,322,279	+	yghU	NIAGMN_16815	0.57	+2.0
3,322,323	-	yghU	NIAGMN_16815	0.62	-1.1
3,322,323	-	yghU	NIAGMN_16815	0.62	-3.3
3,322,404	+	yghU	NIAGMN_16815	0.72	-1.7
3,322,405	-	yghU	NIAGMN_16815	0.72	-0.0
3,322,411	-	yghU	NIAGMN_16815	0.72	+1.7
3,322,411	-	yghU	NIAGMN_16815	0.72	-0.0
3,322,426	+	yghU	NIAGMN_16815	0.74	+1.8
3,322,427	-	yghU	NIAGMN_16815	0.74	+1.4
3,322,470	-	yghU	NIAGMN_16815	0.79	+1.8
3,322,477	-	yghU	NIAGMN_16815	0.80	-0.3
3,322,508	-	yghU	NIAGMN_16815	0.84	+0.7
3,322,515	+	yghU	NIAGMN_16815	0.84	-0.5
3,322,515	+	yghU	NIAGMN_16815	0.84	-0.7
3,322,516	-	yghU	NIAGMN_16815	0.85	-3.0
3,322,516	-	yghU	NIAGMN_16815	0.85	-3.3
3,322,604	+				+0.4
3,322,633	+				+0.1
3,322,633	+				+0.2
3,322,637	+				-0.0
3,322,637	+				-1.5
3,322,637	+				+0.8
3,322,637	+				-2.5
3,322,637	+				-1.2
3,322,637	+				-1.3
3,322,637	+				+1.3
3,322,638	-				-3.8
3,322,638	-				+2.1
3,322,638	-				+0.9
3,322,638	-				-0.2
3,322,650	-				-0.1