Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16275

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,213,695	-				+0.4
3,213,695	-				+0.4
3,213,778	+	mzrA	NIAGMN_16265	0.18	+0.3
3,213,806	+	mzrA	NIAGMN_16265	0.22	-0.3
3,213,806	+	mzrA	NIAGMN_16265	0.22	+0.4
3,213,807	-	mzrA	NIAGMN_16265	0.22	-0.5
3,213,807	-	mzrA	NIAGMN_16265	0.22	+0.2
3,213,931	-	mzrA	NIAGMN_16265	0.41	+1.0
3,213,943	+	mzrA	NIAGMN_16265	0.43	+0.9
3,213,943	+	mzrA	NIAGMN_16265	0.43	+1.7
3,213,944	-	mzrA	NIAGMN_16265	0.43	-0.6
3,213,995	+	mzrA	NIAGMN_16265	0.50	-2.5
3,213,996	-	mzrA	NIAGMN_16265	0.51	-2.5
3,213,996	-	mzrA	NIAGMN_16265	0.51	+0.8
3,214,015	+	mzrA	NIAGMN_16265	0.53	-1.0
3,214,016	-	mzrA	NIAGMN_16265	0.54	-1.2
3,214,064	+	mzrA	NIAGMN_16265	0.61	-2.8
3,214,064	+	mzrA	NIAGMN_16265	0.61	-1.2
3,214,065	-	mzrA	NIAGMN_16265	0.61	-2.4
3,214,065	-	mzrA	NIAGMN_16265	0.61	-0.1
3,214,065	-	mzrA	NIAGMN_16265	0.61	-0.2
3,214,065	-	mzrA	NIAGMN_16265	0.61	-0.0
3,214,065	-	mzrA	NIAGMN_16265	0.61	-0.2
3,214,222	+	mzrA	NIAGMN_16265	0.85	-1.8
3,214,238	+	mzrA	NIAGMN_16265	0.87	+1.4
3,214,238	+	mzrA	NIAGMN_16265	0.87	+0.5
3,214,238	+	mzrA	NIAGMN_16265	0.87	-0.8
3,214,328	+				-0.5
3,214,329	-				+1.0
3,214,386	+	yqiM	NIAGMN_16270	0.53	-0.9
3,214,387	-	yqiM	NIAGMN_16270	0.54	-1.3
3,214,400	+	yqiM	NIAGMN_16270	0.71	-0.2
3,214,418	+				-0.1
3,214,419	-				+1.5
3,214,419	-				+0.5
3,214,419	-				-1.9
3,214,419	-				+1.2
3,214,438	+				-2.8
3,214,438	+				-0.1
3,214,438	+				-0.8
3,214,439	-				-0.3
3,214,439	-				+0.1
3,214,439	-				+0.4
3,214,460	+				-1.7
3,214,461	-				-0.1
3,214,461	-				-0.1
3,214,481	-				-2.4
3,214,481	-				-1.6
3,214,497	+				-1.0
3,214,497	+				+0.1
3,214,497	+				-1.5
3,214,504	-				-1.0
3,214,504	-				-0.4
3,214,504	-				-1.2
3,214,535	+				-0.5
3,214,535	+				+0.2
3,214,535	+				-1.6
3,214,535	+				+0.6
3,214,535	+				+0.2
3,214,590	+				-0.1
3,214,591	-				-0.5
3,214,610	-				+0.8
3,214,664	+				+1.7
3,214,664	+				-0.5
3,214,665	-				-1.7
3,214,665	-				+0.7
3,214,665	-				+0.3
3,214,674	-				-0.8
3,214,674	-				+0.6
3,214,771	-	exuR	NIAGMN_16275	0.13	-4.3
3,214,815	-	exuR	NIAGMN_16275	0.19	-1.1
3,214,815	-	exuR	NIAGMN_16275	0.19	+1.6
3,214,815	-	exuR	NIAGMN_16275	0.19	+0.1
3,214,928	+	exuR	NIAGMN_16275	0.33	-1.2
3,214,935	-	exuR	NIAGMN_16275	0.34	-1.4
3,215,004	-	exuR	NIAGMN_16275	0.43	+0.7
3,215,124	-	exuR	NIAGMN_16275	0.59	+0.7
3,215,126	+	exuR	NIAGMN_16275	0.59	+0.1
3,215,126	+	exuR	NIAGMN_16275	0.59	-2.1
3,215,127	-	exuR	NIAGMN_16275	0.59	-1.6
3,215,170	+	exuR	NIAGMN_16275	0.65	-1.9
3,215,170	+	exuR	NIAGMN_16275	0.65	+0.5
3,215,171	-	exuR	NIAGMN_16275	0.65	-1.2
3,215,186	+	exuR	NIAGMN_16275	0.67	-1.0
3,215,187	-	exuR	NIAGMN_16275	0.67	+1.1
3,215,190	-	exuR	NIAGMN_16275	0.67	-1.0
3,215,190	-	exuR	NIAGMN_16275	0.67	-1.2
3,215,238	-	exuR	NIAGMN_16275	0.73	+1.1
3,215,238	-	exuR	NIAGMN_16275	0.73	-2.4
3,215,250	-	exuR	NIAGMN_16275	0.75	-1.2
3,215,250	-	exuR	NIAGMN_16275	0.75	+1.5
3,215,263	+	exuR	NIAGMN_16275	0.77	-2.4
3,215,263	+	exuR	NIAGMN_16275	0.77	-0.7
3,215,263	+	exuR	NIAGMN_16275	0.77	-1.8
3,215,263	+	exuR	NIAGMN_16275	0.77	+1.2
3,215,263	+	exuR	NIAGMN_16275	0.77	-0.7
3,215,263	+	exuR	NIAGMN_16275	0.77	-1.4
3,215,264	-	exuR	NIAGMN_16275	0.77	-3.4
3,215,264	-	exuR	NIAGMN_16275	0.77	-3.1
3,215,264	-	exuR	NIAGMN_16275	0.77	-0.6
3,215,264	-	exuR	NIAGMN_16275	0.77	-2.8
3,215,301	+	exuR	NIAGMN_16275	0.81	+1.1
3,215,334	-	exuR	NIAGMN_16275	0.86	+0.4
3,215,355	-	exuR	NIAGMN_16275	0.88	+0.5
3,215,369	-				-0.7
3,215,369	-				+0.3
3,215,369	-				-0.7
3,215,416	+				-0.9
3,215,416	+				+0.3
3,215,444	+				+0.9
3,215,463	-				+1.7
3,215,474	+				-1.0
3,215,474	+				-3.4
3,215,501	-				+0.3
3,215,557	-				-1.1
3,215,563	+				-0.3
3,215,563	+				-0.0
3,215,563	+				+0.5
3,215,563	+				-0.3
3,215,576	-				-0.2
3,215,597	+				-0.4
3,215,597	+				+1.5
3,215,597	+				+1.4
3,215,597	+				-0.2
3,215,597	+				-1.8
3,215,598	-				-0.3
3,215,598	-				+0.4
3,215,598	-				-0.5
3,215,640	+				+0.5
3,215,640	+				+0.5
3,215,750	+	exuT	NIAGMN_16280	0.14	+1.6
3,215,750	+	exuT	NIAGMN_16280	0.14	+0.4
3,215,750	+	exuT	NIAGMN_16280	0.14	+0.6
3,215,751	-	exuT	NIAGMN_16280	0.14	-2.6
3,215,751	-	exuT	NIAGMN_16280	0.14	-0.2
3,215,751	-	exuT	NIAGMN_16280	0.14	+0.5
3,215,751	-	exuT	NIAGMN_16280	0.14	-0.2
3,215,831	+	exuT	NIAGMN_16280	0.20	-1.1
3,215,831	+	exuT	NIAGMN_16280	0.20	+1.9
3,215,885	+	exuT	NIAGMN_16280	0.24	-1.1
3,215,885	+	exuT	NIAGMN_16280	0.24	-0.6
3,215,885	+	exuT	NIAGMN_16280	0.24	+0.7
3,215,885	+	exuT	NIAGMN_16280	0.24	-1.1
3,215,885	+	exuT	NIAGMN_16280	0.24	+0.0
3,215,885	+	exuT	NIAGMN_16280	0.24	-0.8
3,215,886	-	exuT	NIAGMN_16280	0.24	-3.7
3,215,886	-	exuT	NIAGMN_16280	0.24	-3.2
3,215,886	-	exuT	NIAGMN_16280	0.24	+0.7
3,215,886	-	exuT	NIAGMN_16280	0.24	+2.7
3,215,886	-	exuT	NIAGMN_16280	0.24	+0.1
3,215,896	+	exuT	NIAGMN_16280	0.25	+0.6
3,215,897	-	exuT	NIAGMN_16280	0.25	-1.0
3,215,922	-	exuT	NIAGMN_16280	0.27	-2.9
3,215,967	-	exuT	NIAGMN_16280	0.30	+0.1
3,216,032	+	exuT	NIAGMN_16280	0.35	+0.6
3,216,101	-	exuT	NIAGMN_16280	0.41	+1.4
3,216,263	+	exuT	NIAGMN_16280	0.53	+0.9
3,216,264	-	exuT	NIAGMN_16280	0.53	-0.8
3,216,266	+	exuT	NIAGMN_16280	0.53	-1.7
3,216,266	+	exuT	NIAGMN_16280	0.53	+0.4
3,216,269	+	exuT	NIAGMN_16280	0.54	+0.5
3,216,269	+	exuT	NIAGMN_16280	0.54	+0.3
3,216,269	+	exuT	NIAGMN_16280	0.54	-2.9
3,216,269	+	exuT	NIAGMN_16280	0.54	+0.2
3,216,270	-	exuT	NIAGMN_16280	0.54	+1.1
3,216,270	-	exuT	NIAGMN_16280	0.54	+1.0
3,216,270	-	exuT	NIAGMN_16280	0.54	+0.7
3,216,271	+	exuT	NIAGMN_16280	0.54	+0.7
3,216,272	-	exuT	NIAGMN_16280	0.54	+0.5
3,216,272	-	exuT	NIAGMN_16280	0.54	-0.5
3,216,272	-	exuT	NIAGMN_16280	0.54	+1.5
3,216,272	-	exuT	NIAGMN_16280	0.54	+0.8
3,216,272	-	exuT	NIAGMN_16280	0.54	-0.2
3,216,318	-	exuT	NIAGMN_16280	0.57	+1.8
3,216,348	-	exuT	NIAGMN_16280	0.60	+2.2
3,216,371	+	exuT	NIAGMN_16280	0.61	-0.7
3,216,372	-	exuT	NIAGMN_16280	0.61	+1.4
3,216,372	-	exuT	NIAGMN_16280	0.61	-2.9
3,216,372	-	exuT	NIAGMN_16280	0.61	-0.0