Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16190

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,201,475	+	tdcE	NIAGMN_16180	0.78	+1.3
3,201,520	-	tdcE	NIAGMN_16180	0.80	+0.1
3,201,667	+	tdcE	NIAGMN_16180	0.87	+1.2
3,201,689	-	tdcE	NIAGMN_16180	0.87	+2.3
3,201,735	-	tdcE	NIAGMN_16180	0.89	+0.6
3,201,735	-	tdcE	NIAGMN_16180	0.89	-1.0
3,201,738	+	tdcE	NIAGMN_16180	0.90	-0.5
3,201,738	+	tdcE	NIAGMN_16180	0.90	-1.0
3,201,739	-	tdcE	NIAGMN_16180	0.90	-0.1
3,201,739	-	tdcE	NIAGMN_16180	0.90	-0.6
3,201,739	-	tdcE	NIAGMN_16180	0.90	+1.5
3,201,739	-	tdcE	NIAGMN_16180	0.90	-0.4
3,201,769	+				+1.0
3,201,821	+				-2.4
3,201,822	-				-0.8
3,201,822	-				-1.5
3,201,874	-				+1.2
3,201,945	+				-0.3
3,201,946	-				-0.1
3,201,954	+				+1.5
3,201,955	-				+0.7
3,201,955	-				+0.5
3,201,955	-				+0.7
3,201,989	-				+0.4
3,201,989	-				+0.9
3,201,989	-				+0.2
3,201,989	-				+0.8
3,202,037	+	tdcF	NIAGMN_16185	0.12	-1.5
3,202,143	+	tdcF	NIAGMN_16185	0.39	+0.9
3,202,143	+	tdcF	NIAGMN_16185	0.39	+2.0
3,202,198	+	tdcF	NIAGMN_16185	0.54	-3.5
3,202,259	+	tdcF	NIAGMN_16185	0.69	-1.9
3,202,259	+	tdcF	NIAGMN_16185	0.69	-0.8
3,202,259	+	tdcF	NIAGMN_16185	0.69	+0.9
3,202,260	-	tdcF	NIAGMN_16185	0.69	-0.6
3,202,260	-	tdcF	NIAGMN_16185	0.69	+2.0
3,202,260	-	tdcF	NIAGMN_16185	0.69	+1.5
3,202,261	+	tdcF	NIAGMN_16185	0.70	-0.2
3,202,293	-	tdcF	NIAGMN_16185	0.78	-0.3
3,202,311	+	tdcF	NIAGMN_16185	0.83	-1.1
3,202,357	+				-0.8
3,202,365	+				-0.9
3,202,365	+				+0.5
3,202,369	+				+0.2
3,202,369	+				-0.8
3,202,369	+				+1.7
3,202,369	+				+1.4
3,202,370	-				-0.3
3,202,370	-				-1.0
3,202,370	-				+0.7
3,202,370	-				-0.8
3,202,402	-				-1.5
3,202,450	-				-0.2
3,202,456	-				+1.0
3,202,456	-				-3.7
3,202,456	-				+0.9
3,202,554	+				+1.2
3,202,562	+				+2.9
3,202,563	-				+0.9
3,202,563	-				+1.3
3,202,563	-				+0.8
3,202,581	+				-0.5
3,202,581	+				+0.2
3,202,582	-				-3.2
3,202,582	-				+0.5
3,202,597	+	tdcG	NIAGMN_16190	0.11	-0.5
3,202,597	+	tdcG	NIAGMN_16190	0.11	-2.5
3,202,709	+	tdcG	NIAGMN_16190	0.19	-0.0
3,202,715	+	tdcG	NIAGMN_16190	0.19	-0.3
3,202,715	+	tdcG	NIAGMN_16190	0.19	-0.3
3,202,788	+	tdcG	NIAGMN_16190	0.25	+0.6
3,202,862	+	tdcG	NIAGMN_16190	0.30	+0.5
3,202,862	+	tdcG	NIAGMN_16190	0.30	-2.4
3,202,862	+	tdcG	NIAGMN_16190	0.30	+0.5
3,202,863	-	tdcG	NIAGMN_16190	0.30	-0.5
3,202,863	-	tdcG	NIAGMN_16190	0.30	-0.2
3,202,863	-	tdcG	NIAGMN_16190	0.30	-2.4
3,202,865	+	tdcG	NIAGMN_16190	0.30	+1.1
3,202,865	+	tdcG	NIAGMN_16190	0.30	-0.9
3,202,865	+	tdcG	NIAGMN_16190	0.30	-0.5
3,202,866	-	tdcG	NIAGMN_16190	0.30	+1.1
3,202,866	-	tdcG	NIAGMN_16190	0.30	-0.4
3,202,866	-	tdcG	NIAGMN_16190	0.30	+0.5
3,202,866	-	tdcG	NIAGMN_16190	0.30	+0.2
3,202,870	-	tdcG	NIAGMN_16190	0.31	-1.9
3,202,876	+	tdcG	NIAGMN_16190	0.31	-0.1
3,202,876	+	tdcG	NIAGMN_16190	0.31	+0.6
3,202,876	+	tdcG	NIAGMN_16190	0.31	+0.4
3,202,877	-	tdcG	NIAGMN_16190	0.31	+0.9
3,202,877	-	tdcG	NIAGMN_16190	0.31	-3.5
3,202,879	+	tdcG	NIAGMN_16190	0.31	+0.3
3,202,880	-	tdcG	NIAGMN_16190	0.32	-1.5
3,202,949	+	tdcG	NIAGMN_16190	0.37	-1.3
3,202,954	+	tdcG	NIAGMN_16190	0.37	-3.4
3,202,955	-	tdcG	NIAGMN_16190	0.37	-1.7
3,202,955	-	tdcG	NIAGMN_16190	0.37	+1.5
3,202,955	-	tdcG	NIAGMN_16190	0.37	+0.6
3,202,955	-	tdcG	NIAGMN_16190	0.37	-2.9
3,202,997	-	tdcG	NIAGMN_16190	0.40	-1.7
3,202,997	-	tdcG	NIAGMN_16190	0.40	+0.1
3,203,039	+	tdcG	NIAGMN_16190	0.43	-1.5
3,203,040	-	tdcG	NIAGMN_16190	0.43	+0.6
3,203,052	+	tdcG	NIAGMN_16190	0.44	-0.7
3,203,052	+	tdcG	NIAGMN_16190	0.44	+0.2
3,203,203	-	tdcG	NIAGMN_16190	0.55	-2.1
3,203,248	+	tdcG	NIAGMN_16190	0.58	+2.0
3,203,248	+	tdcG	NIAGMN_16190	0.58	-2.6
3,203,248	+	tdcG	NIAGMN_16190	0.58	+2.2
3,203,249	-	tdcG	NIAGMN_16190	0.59	-0.3
3,203,249	-	tdcG	NIAGMN_16190	0.59	+0.9
3,203,249	-	tdcG	NIAGMN_16190	0.59	-0.2
3,203,249	-	tdcG	NIAGMN_16190	0.59	-1.1
3,203,249	-	tdcG	NIAGMN_16190	0.59	+0.5
3,203,249	-	tdcG	NIAGMN_16190	0.59	+0.0
3,203,344	+	tdcG	NIAGMN_16190	0.65	-3.3
3,203,345	-	tdcG	NIAGMN_16190	0.66	+1.1
3,203,347	+	tdcG	NIAGMN_16190	0.66	+0.6
3,203,347	+	tdcG	NIAGMN_16190	0.66	+0.5
3,203,348	-	tdcG	NIAGMN_16190	0.66	+1.2
3,203,352	+	tdcG	NIAGMN_16190	0.66	+0.7
3,203,352	+	tdcG	NIAGMN_16190	0.66	-0.0
3,203,353	-	tdcG	NIAGMN_16190	0.66	+1.7
3,203,412	+	tdcG	NIAGMN_16190	0.70	+1.0
3,203,511	-	tdcG	NIAGMN_16190	0.78	+3.2
3,203,519	+	tdcG	NIAGMN_16190	0.78	+0.3
3,203,519	+	tdcG	NIAGMN_16190	0.78	+0.0
3,203,520	-	tdcG	NIAGMN_16190	0.78	-1.5
3,203,520	-	tdcG	NIAGMN_16190	0.78	-2.1
3,203,520	-	tdcG	NIAGMN_16190	0.78	-0.4
3,203,543	+	tdcG	NIAGMN_16190	0.80	+0.7
3,203,544	-	tdcG	NIAGMN_16190	0.80	-1.1
3,203,544	-	tdcG	NIAGMN_16190	0.80	+1.0
3,203,574	+	tdcG	NIAGMN_16190	0.82	-3.9
3,203,574	+	tdcG	NIAGMN_16190	0.82	-0.8
3,203,574	+	tdcG	NIAGMN_16190	0.82	+0.2
3,203,612	+	tdcG	NIAGMN_16190	0.85	+0.2
3,203,634	+	tdcG	NIAGMN_16190	0.87	-0.0
3,203,634	+	tdcG	NIAGMN_16190	0.87	+0.8
3,203,634	+	tdcG	NIAGMN_16190	0.87	+0.7
3,203,634	+	tdcG	NIAGMN_16190	0.87	-1.3
3,203,715	+				-1.0
3,203,735	-				-0.9
3,203,735	-				-0.1
3,203,735	-				+0.2
3,203,751	+				-0.5
3,203,751	+				+0.5
3,203,751	+				+0.4
3,203,752	-				-0.6
3,203,760	+				-0.4
3,203,760	+				+1.4
3,203,761	-				-3.2
3,203,764	+				+1.9
3,203,881	-				-2.7
3,203,997	+				-0.8
3,203,997	+				+0.4
3,204,215	-				-2.5
3,204,215	-				-2.3
3,204,326	+	dlsT	NIAGMN_16195	0.18	-3.6
3,204,326	+	dlsT	NIAGMN_16195	0.18	-1.6
3,204,326	+	dlsT	NIAGMN_16195	0.18	-0.2
3,204,327	-	dlsT	NIAGMN_16195	0.18	+0.4
3,204,327	-	dlsT	NIAGMN_16195	0.18	-1.2
3,204,327	-	dlsT	NIAGMN_16195	0.18	-0.0
3,204,346	+	dlsT	NIAGMN_16195	0.19	-0.5
3,204,346	+	dlsT	NIAGMN_16195	0.19	+1.6
3,204,347	-	dlsT	NIAGMN_16195	0.19	-2.1
3,204,349	+	dlsT	NIAGMN_16195	0.20	+0.2
3,204,350	-	dlsT	NIAGMN_16195	0.20	-0.9
3,204,350	-	dlsT	NIAGMN_16195	0.20	+0.7
3,204,352	+	dlsT	NIAGMN_16195	0.20	-1.2
3,204,352	+	dlsT	NIAGMN_16195	0.20	+0.2
3,204,352	+	dlsT	NIAGMN_16195	0.20	+0.8
3,204,432	+	dlsT	NIAGMN_16195	0.26	+0.4
3,204,443	+	dlsT	NIAGMN_16195	0.27	-0.4
3,204,443	+	dlsT	NIAGMN_16195	0.27	+0.4
3,204,443	+	dlsT	NIAGMN_16195	0.27	-4.2
3,204,444	-	dlsT	NIAGMN_16195	0.27	-1.4
3,204,509	+	dlsT	NIAGMN_16195	0.32	-0.2
3,204,510	-	dlsT	NIAGMN_16195	0.32	+0.1
3,204,517	+	dlsT	NIAGMN_16195	0.32	+0.7
3,204,517	+	dlsT	NIAGMN_16195	0.32	-0.4
3,204,517	+	dlsT	NIAGMN_16195	0.32	-0.2
3,204,517	+	dlsT	NIAGMN_16195	0.32	+0.1
3,204,517	+	dlsT	NIAGMN_16195	0.32	-1.7
3,204,518	-	dlsT	NIAGMN_16195	0.32	+0.5
3,204,518	-	dlsT	NIAGMN_16195	0.32	-0.7
3,204,518	-	dlsT	NIAGMN_16195	0.32	-0.2
3,204,560	+	dlsT	NIAGMN_16195	0.35	+1.1
3,204,561	-	dlsT	NIAGMN_16195	0.35	-0.4
3,204,561	-	dlsT	NIAGMN_16195	0.35	-1.7
3,204,704	+	dlsT	NIAGMN_16195	0.46	-0.4
3,204,704	+	dlsT	NIAGMN_16195	0.46	-0.5
3,204,705	-	dlsT	NIAGMN_16195	0.46	+0.9
3,204,705	-	dlsT	NIAGMN_16195	0.46	+0.9
3,204,705	-	dlsT	NIAGMN_16195	0.46	-1.9
3,204,705	-	dlsT	NIAGMN_16195	0.46	+0.2
3,204,754	+	dlsT	NIAGMN_16195	0.50	+0.9
3,204,757	+	dlsT	NIAGMN_16195	0.50	-2.4
3,204,757	+	dlsT	NIAGMN_16195	0.50	-1.0
3,204,758	-	dlsT	NIAGMN_16195	0.50	+0.8
3,204,801	+	dlsT	NIAGMN_16195	0.53	+0.7
3,204,801	+	dlsT	NIAGMN_16195	0.53	+0.6