Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15635

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,096,541	+	nanK	NIAGMN_15625	0.47	+0.5
3,096,542	-	nanK	NIAGMN_15625	0.47	-0.7
3,096,542	-	nanK	NIAGMN_15625	0.47	-2.0
3,096,599	+	nanK	NIAGMN_15625	0.53	-0.1
3,096,599	+	nanK	NIAGMN_15625	0.53	-2.0
3,096,599	+	nanK	NIAGMN_15625	0.53	+0.4
3,096,599	+	nanK	NIAGMN_15625	0.53	+0.8
3,096,599	+	nanK	NIAGMN_15625	0.53	-0.8
3,096,600	-	nanK	NIAGMN_15625	0.53	-0.7
3,096,600	-	nanK	NIAGMN_15625	0.53	+0.6
3,096,678	-	nanK	NIAGMN_15625	0.62	+1.1
3,096,813	-	nanK	NIAGMN_15625	0.78	+0.2
3,096,816	-	nanK	NIAGMN_15625	0.78	-1.9
3,096,816	-	nanK	NIAGMN_15625	0.78	-1.0
3,096,816	-	nanK	NIAGMN_15625	0.78	+0.9
3,096,897	+	nanK	NIAGMN_15625	0.87	+1.1
3,096,897	+	nanK	NIAGMN_15625	0.87	-1.5
3,096,897	+	nanK	NIAGMN_15625	0.87	+1.4
3,096,898	-	nanK	NIAGMN_15625	0.87	+0.2
3,096,898	-	nanK	NIAGMN_15625	0.87	+0.5
3,096,935	-				-0.1
3,096,967	+				+0.4
3,097,020	+				+0.2
3,097,020	+				-0.1
3,097,045	-				+0.1
3,097,080	+	nanQ	NIAGMN_15630	0.16	-0.9
3,097,080	+	nanQ	NIAGMN_15630	0.16	+1.7
3,097,080	+	nanQ	NIAGMN_15630	0.16	+0.6
3,097,080	+	nanQ	NIAGMN_15630	0.16	-1.2
3,097,136	-	nanQ	NIAGMN_15630	0.28	+0.5
3,097,159	+	nanQ	NIAGMN_15630	0.33	+0.0
3,097,205	+	nanQ	NIAGMN_15630	0.43	+1.7
3,097,205	+	nanQ	NIAGMN_15630	0.43	-0.7
3,097,205	+	nanQ	NIAGMN_15630	0.43	+0.2
3,097,205	+	nanQ	NIAGMN_15630	0.43	-0.2
3,097,206	-	nanQ	NIAGMN_15630	0.43	-1.0
3,097,206	-	nanQ	NIAGMN_15630	0.43	-1.1
3,097,206	-	nanQ	NIAGMN_15630	0.43	-1.0
3,097,224	+	nanQ	NIAGMN_15630	0.47	+2.8
3,097,225	-	nanQ	NIAGMN_15630	0.48	+3.5
3,097,225	-	nanQ	NIAGMN_15630	0.48	-2.6
3,097,227	+	nanQ	NIAGMN_15630	0.48	-0.3
3,097,227	+	nanQ	NIAGMN_15630	0.48	-0.1
3,097,304	+	nanQ	NIAGMN_15630	0.65	+0.9
3,097,304	+	nanQ	NIAGMN_15630	0.65	+0.3
3,097,347	+	nanQ	NIAGMN_15630	0.74	+0.5
3,097,348	-	nanQ	NIAGMN_15630	0.74	+1.3
3,097,348	-	nanQ	NIAGMN_15630	0.74	-1.6
3,097,348	-	nanQ	NIAGMN_15630	0.74	+0.1
3,097,372	+	nanQ	NIAGMN_15630	0.79	+0.3
3,097,373	-	nanQ	NIAGMN_15630	0.79	-0.1
3,097,391	-	nanQ	NIAGMN_15630	0.83	-0.6
3,097,426	+				+0.8
3,097,427	-				-0.7
3,097,459	-				-1.1
3,097,459	-				-2.4
3,097,474	-				-0.3
3,097,553	-				-0.1
3,097,553	-				+0.9
3,097,603	+				-2.1
3,097,604	-				-3.4
3,097,604	-				-1.2
3,097,614	+				+2.5
3,097,614	+				-0.8
3,097,614	+				+0.8
3,097,614	+				-0.8
3,097,615	-				-2.9
3,097,615	-				+0.7
3,097,615	-				-0.1
3,097,616	+				-1.5
3,097,616	+				-0.1
3,097,617	-				+0.0
3,097,617	-				-2.3
3,097,638	+	yhcG	NIAGMN_15635	0.10	-1.0
3,097,658	+	yhcG	NIAGMN_15635	0.12	+0.8
3,097,746	-	yhcG	NIAGMN_15635	0.21	-0.2
3,097,754	+	yhcG	NIAGMN_15635	0.22	-2.0
3,097,754	+	yhcG	NIAGMN_15635	0.22	-0.7
3,097,755	-	yhcG	NIAGMN_15635	0.22	+0.7
3,097,758	+	yhcG	NIAGMN_15635	0.22	-2.5
3,097,758	+	yhcG	NIAGMN_15635	0.22	-0.4
3,097,758	+	yhcG	NIAGMN_15635	0.22	+1.4
3,097,758	+	yhcG	NIAGMN_15635	0.22	-0.3
3,097,758	+	yhcG	NIAGMN_15635	0.22	-0.2
3,097,759	-	yhcG	NIAGMN_15635	0.22	+0.1
3,097,759	-	yhcG	NIAGMN_15635	0.22	+0.9
3,097,759	-	yhcG	NIAGMN_15635	0.22	-1.3
3,097,779	+	yhcG	NIAGMN_15635	0.24	-2.8
3,097,781	+	yhcG	NIAGMN_15635	0.24	+0.5
3,097,781	+	yhcG	NIAGMN_15635	0.24	+0.7
3,097,781	+	yhcG	NIAGMN_15635	0.24	+0.1
3,097,781	+	yhcG	NIAGMN_15635	0.24	-2.0
3,097,781	+	yhcG	NIAGMN_15635	0.24	-1.3
3,097,782	-	yhcG	NIAGMN_15635	0.24	-1.4
3,097,782	-	yhcG	NIAGMN_15635	0.24	-0.8
3,097,782	-	yhcG	NIAGMN_15635	0.24	-0.5
3,097,782	-	yhcG	NIAGMN_15635	0.24	+2.1
3,097,782	-	yhcG	NIAGMN_15635	0.24	-0.7
3,097,782	-	yhcG	NIAGMN_15635	0.24	-1.4
3,097,802	-	yhcG	NIAGMN_15635	0.26	-2.2
3,097,879	+	yhcG	NIAGMN_15635	0.33	+0.3
3,097,979	+	yhcG	NIAGMN_15635	0.43	-1.1
3,097,979	+	yhcG	NIAGMN_15635	0.43	+0.3
3,097,980	-	yhcG	NIAGMN_15635	0.43	+0.7
3,098,043	+	yhcG	NIAGMN_15635	0.49	+1.9
3,098,043	+	yhcG	NIAGMN_15635	0.49	-1.7
3,098,044	-	yhcG	NIAGMN_15635	0.49	+1.3
3,098,044	-	yhcG	NIAGMN_15635	0.49	-0.6
3,098,137	+	yhcG	NIAGMN_15635	0.58	-1.0
3,098,137	+	yhcG	NIAGMN_15635	0.58	-0.8
3,098,137	+	yhcG	NIAGMN_15635	0.58	-1.3
3,098,225	+	yhcG	NIAGMN_15635	0.66	-1.6
3,098,226	-	yhcG	NIAGMN_15635	0.66	-0.9
3,098,226	-	yhcG	NIAGMN_15635	0.66	-0.4
3,098,226	-	yhcG	NIAGMN_15635	0.66	-0.4
3,098,226	-	yhcG	NIAGMN_15635	0.66	+0.3
3,098,248	+	yhcG	NIAGMN_15635	0.69	-0.9
3,098,248	+	yhcG	NIAGMN_15635	0.69	+0.5
3,098,298	-	yhcG	NIAGMN_15635	0.73	+1.4
3,098,343	+	yhcG	NIAGMN_15635	0.78	+1.0
3,098,343	+	yhcG	NIAGMN_15635	0.78	-1.8
3,098,343	+	yhcG	NIAGMN_15635	0.78	-1.9
3,098,343	+	yhcG	NIAGMN_15635	0.78	-0.5
3,098,344	-	yhcG	NIAGMN_15635	0.78	+0.2
3,098,344	-	yhcG	NIAGMN_15635	0.78	+0.5
3,098,344	-	yhcG	NIAGMN_15635	0.78	-2.7
3,098,345	+	yhcG	NIAGMN_15635	0.78	+0.1
3,098,345	+	yhcG	NIAGMN_15635	0.78	-2.6
3,098,346	-	yhcG	NIAGMN_15635	0.78	-0.2
3,098,346	-	yhcG	NIAGMN_15635	0.78	+0.4
3,098,346	-	yhcG	NIAGMN_15635	0.78	+0.3
3,098,356	+	yhcG	NIAGMN_15635	0.79	-0.6
3,098,356	+	yhcG	NIAGMN_15635	0.79	-0.6
3,098,357	-	yhcG	NIAGMN_15635	0.79	-0.2
3,098,357	-	yhcG	NIAGMN_15635	0.79	-0.3
3,098,369	-	yhcG	NIAGMN_15635	0.80	+1.0
3,098,369	-	yhcG	NIAGMN_15635	0.80	+0.3
3,098,380	+	yhcG	NIAGMN_15635	0.81	+0.5
3,098,380	+	yhcG	NIAGMN_15635	0.81	+0.7
3,098,454	-	yhcG	NIAGMN_15635	0.88	-0.1
3,098,481	+				-2.0
3,098,481	+				-1.6
3,098,485	+				-0.7
3,098,485	+				-2.3
3,098,485	+				+0.7
3,098,486	-				-1.2
3,098,486	-				+0.9
3,098,520	+				-3.0
3,098,520	+				-0.3
3,098,521	-				+0.6
3,098,521	-				+0.2
3,098,524	-				+1.2
3,098,544	-				+0.0
3,098,591	-				+1.9
3,098,591	-				+0.8
3,098,591	-				-0.1
3,098,591	-				+0.4
3,098,592	+				-1.7
3,098,593	-				+0.7
3,098,593	-				+1.1
3,098,623	-				-2.3
3,098,623	-				+0.3
3,098,624	+				-3.4
3,098,664	+				-0.3
3,098,664	+				+1.2
3,098,665	-				+1.1
3,098,684	+				-1.0
3,098,782	-				+0.1
3,098,782	-				-0.7
3,098,799	+				+1.0
3,099,015	+	gltD	NIAGMN_15640	0.18	+0.5
3,099,015	+	gltD	NIAGMN_15640	0.18	-0.2
3,099,015	+	gltD	NIAGMN_15640	0.18	+0.1
3,099,015	+	gltD	NIAGMN_15640	0.18	-0.7
3,099,016	-	gltD	NIAGMN_15640	0.18	+0.5
3,099,016	-	gltD	NIAGMN_15640	0.18	+0.2
3,099,016	-	gltD	NIAGMN_15640	0.18	+1.1
3,099,081	+	gltD	NIAGMN_15640	0.23	+0.8
3,099,094	+	gltD	NIAGMN_15640	0.23	+1.3
3,099,160	+	gltD	NIAGMN_15640	0.28	-0.3
3,099,160	+	gltD	NIAGMN_15640	0.28	+0.5
3,099,161	-	gltD	NIAGMN_15640	0.28	+0.2
3,099,161	-	gltD	NIAGMN_15640	0.28	-0.4
3,099,161	-	gltD	NIAGMN_15640	0.28	-3.2
3,099,161	-	gltD	NIAGMN_15640	0.28	-0.1
3,099,238	-	gltD	NIAGMN_15640	0.34	-1.2
3,099,238	-	gltD	NIAGMN_15640	0.34	+0.1
3,099,259	+	gltD	NIAGMN_15640	0.35	+1.1
3,099,259	+	gltD	NIAGMN_15640	0.35	-0.1
3,099,259	+	gltD	NIAGMN_15640	0.35	+1.6
3,099,260	-	gltD	NIAGMN_15640	0.35	-1.2
3,099,260	-	gltD	NIAGMN_15640	0.35	-0.2
3,099,304	+	gltD	NIAGMN_15640	0.38	-0.9
3,099,304	+	gltD	NIAGMN_15640	0.38	-1.4
3,099,305	-	gltD	NIAGMN_15640	0.38	+1.1
3,099,305	-	gltD	NIAGMN_15640	0.38	+1.7
3,099,305	-	gltD	NIAGMN_15640	0.38	+0.2
3,099,307	+	gltD	NIAGMN_15640	0.38	+0.6
3,099,308	-	gltD	NIAGMN_15640	0.39	+0.7
3,099,308	-	gltD	NIAGMN_15640	0.39	+0.2
3,099,308	-	gltD	NIAGMN_15640	0.39	+0.6
3,099,308	-	gltD	NIAGMN_15640	0.39	+0.4
3,099,367	+	gltD	NIAGMN_15640	0.43	+2.6
3,099,368	-	gltD	NIAGMN_15640	0.43	-0.9
3,099,407	+	gltD	NIAGMN_15640	0.46	-2.2
3,099,408	-	gltD	NIAGMN_15640	0.46	-0.3
3,099,456	-	gltD	NIAGMN_15640	0.49	+0.8
3,099,456	-	gltD	NIAGMN_15640	0.49	+0.6
3,099,486	-	gltD	NIAGMN_15640	0.51	+0.5
3,099,511	+	gltD	NIAGMN_15640	0.53	-0.6
3,099,512	-	gltD	NIAGMN_15640	0.53	-0.5