Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15535

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,077,321	-	aaeX	NIAGMN_15525	0.80	-5.3
3,077,321	-	aaeX	NIAGMN_15525	0.80	+0.3
3,077,335	+	aaeX	NIAGMN_15525	0.87	-1.7
3,077,336	-	aaeX	NIAGMN_15525	0.87	-3.2
3,077,379	+				+0.4
3,077,415	+				-0.8
3,077,418	+				+1.6
3,077,418	+				+0.7
3,077,419	-				-3.4
3,077,419	-				-3.3
3,077,446	+				-0.1
3,077,462	+	aaeA	NIAGMN_15530	0.10	+0.6
3,077,462	+	aaeA	NIAGMN_15530	0.10	+1.3
3,077,462	+	aaeA	NIAGMN_15530	0.10	-1.4
3,077,463	-	aaeA	NIAGMN_15530	0.10	-0.0
3,077,463	-	aaeA	NIAGMN_15530	0.10	+0.2
3,077,463	-	aaeA	NIAGMN_15530	0.10	+0.2
3,077,463	-	aaeA	NIAGMN_15530	0.10	+1.2
3,077,463	-	aaeA	NIAGMN_15530	0.10	+2.1
3,077,651	+	aaeA	NIAGMN_15530	0.30	+0.8
3,077,651	+	aaeA	NIAGMN_15530	0.30	-1.2
3,077,652	-	aaeA	NIAGMN_15530	0.30	+1.4
3,077,652	-	aaeA	NIAGMN_15530	0.30	-3.0
3,077,654	+	aaeA	NIAGMN_15530	0.31	-0.1
3,077,699	-	aaeA	NIAGMN_15530	0.35	-0.6
3,077,754	+	aaeA	NIAGMN_15530	0.41	-1.7
3,077,754	+	aaeA	NIAGMN_15530	0.41	-1.2
3,077,757	+	aaeA	NIAGMN_15530	0.42	-2.4
3,077,757	+	aaeA	NIAGMN_15530	0.42	-0.6
3,077,758	-	aaeA	NIAGMN_15530	0.42	-0.5
3,077,758	-	aaeA	NIAGMN_15530	0.42	-0.8
3,077,758	-	aaeA	NIAGMN_15530	0.42	+1.9
3,077,758	-	aaeA	NIAGMN_15530	0.42	-0.9
3,077,758	-	aaeA	NIAGMN_15530	0.42	-0.8
3,077,758	-	aaeA	NIAGMN_15530	0.42	-1.0
3,077,758	-	aaeA	NIAGMN_15530	0.42	+1.5
3,077,758	-	aaeA	NIAGMN_15530	0.42	+0.4
3,077,876	+	aaeA	NIAGMN_15530	0.55	+0.7
3,077,877	-	aaeA	NIAGMN_15530	0.55	-1.6
3,077,877	-	aaeA	NIAGMN_15530	0.55	+0.1
3,077,879	-	aaeA	NIAGMN_15530	0.55	-0.1
3,077,890	+	aaeA	NIAGMN_15530	0.56	+0.5
3,077,939	+	aaeA	NIAGMN_15530	0.61	+1.0
3,077,939	+	aaeA	NIAGMN_15530	0.61	-1.8
3,077,939	+	aaeA	NIAGMN_15530	0.61	-0.4
3,077,940	-	aaeA	NIAGMN_15530	0.61	+0.5
3,077,940	-	aaeA	NIAGMN_15530	0.61	+0.0
3,077,940	-	aaeA	NIAGMN_15530	0.61	+0.4
3,077,943	+	aaeA	NIAGMN_15530	0.62	+0.4
3,077,944	-	aaeA	NIAGMN_15530	0.62	-0.1
3,077,944	-	aaeA	NIAGMN_15530	0.62	+1.8
3,077,944	-	aaeA	NIAGMN_15530	0.62	-3.9
3,077,944	-	aaeA	NIAGMN_15530	0.62	-1.5
3,077,944	-	aaeA	NIAGMN_15530	0.62	-1.0
3,077,944	-	aaeA	NIAGMN_15530	0.62	-0.8
3,077,944	-	aaeA	NIAGMN_15530	0.62	+0.2
3,077,951	+	aaeA	NIAGMN_15530	0.63	+0.1
3,077,951	+	aaeA	NIAGMN_15530	0.63	-1.1
3,077,951	+	aaeA	NIAGMN_15530	0.63	+0.4
3,077,951	+	aaeA	NIAGMN_15530	0.63	+0.8
3,077,951	+	aaeA	NIAGMN_15530	0.63	+0.6
3,077,951	+	aaeA	NIAGMN_15530	0.63	+0.5
3,077,953	+	aaeA	NIAGMN_15530	0.63	+1.2
3,077,966	-	aaeA	NIAGMN_15530	0.64	+0.4
3,078,020	-	aaeA	NIAGMN_15530	0.70	+0.9
3,078,046	+	aaeA	NIAGMN_15530	0.73	-0.2
3,078,046	+	aaeA	NIAGMN_15530	0.73	-0.1
3,078,046	+	aaeA	NIAGMN_15530	0.73	+0.4
3,078,047	-	aaeA	NIAGMN_15530	0.73	-1.8
3,078,115	+	aaeA	NIAGMN_15530	0.80	+0.7
3,078,116	-	aaeA	NIAGMN_15530	0.80	-1.4
3,078,116	-	aaeA	NIAGMN_15530	0.80	+3.0
3,078,209	-				-0.8
3,078,209	-				-0.1
3,078,309	+				+0.0
3,078,333	+				-1.2
3,078,333	+				+1.5
3,078,368	+				-0.7
3,078,368	+				-0.3
3,078,368	+				-0.6
3,078,369	-				-0.6
3,078,369	-				+0.9
3,078,528	+	aaeB	NIAGMN_15535	0.11	-0.5
3,078,528	+	aaeB	NIAGMN_15535	0.11	+0.4
3,078,528	+	aaeB	NIAGMN_15535	0.11	+0.6
3,078,537	+	aaeB	NIAGMN_15535	0.12	+1.6
3,078,537	+	aaeB	NIAGMN_15535	0.12	-1.2
3,078,538	-	aaeB	NIAGMN_15535	0.12	-0.5
3,078,538	-	aaeB	NIAGMN_15535	0.12	-0.4
3,078,603	+	aaeB	NIAGMN_15535	0.15	+0.7
3,078,603	+	aaeB	NIAGMN_15535	0.15	-1.4
3,078,603	+	aaeB	NIAGMN_15535	0.15	+2.0
3,078,648	-	aaeB	NIAGMN_15535	0.17	+0.3
3,078,658	+	aaeB	NIAGMN_15535	0.18	-1.7
3,078,659	-	aaeB	NIAGMN_15535	0.18	+0.7
3,078,659	-	aaeB	NIAGMN_15535	0.18	+0.1
3,078,727	-	aaeB	NIAGMN_15535	0.21	+0.3
3,078,727	-	aaeB	NIAGMN_15535	0.21	-0.3
3,078,754	-	aaeB	NIAGMN_15535	0.23	-0.0
3,078,754	-	aaeB	NIAGMN_15535	0.23	+0.0
3,078,754	-	aaeB	NIAGMN_15535	0.23	-0.5
3,078,771	+	aaeB	NIAGMN_15535	0.24	+1.5
3,078,772	-	aaeB	NIAGMN_15535	0.24	+1.4
3,078,872	+	aaeB	NIAGMN_15535	0.29	-0.8
3,078,953	+	aaeB	NIAGMN_15535	0.33	-0.1
3,079,017	-	aaeB	NIAGMN_15535	0.36	+0.2
3,079,030	-	aaeB	NIAGMN_15535	0.37	-0.2
3,079,030	-	aaeB	NIAGMN_15535	0.37	+1.3
3,079,069	+	aaeB	NIAGMN_15535	0.39	+0.9
3,079,069	+	aaeB	NIAGMN_15535	0.39	-0.6
3,079,070	-	aaeB	NIAGMN_15535	0.39	+1.4
3,079,074	+	aaeB	NIAGMN_15535	0.39	+0.1
3,079,074	+	aaeB	NIAGMN_15535	0.39	+1.3
3,079,075	-	aaeB	NIAGMN_15535	0.39	+2.2
3,079,083	+	aaeB	NIAGMN_15535	0.40	-1.6
3,079,084	-	aaeB	NIAGMN_15535	0.40	+0.1
3,079,084	-	aaeB	NIAGMN_15535	0.40	-1.6
3,079,107	+	aaeB	NIAGMN_15535	0.41	-0.9
3,079,108	-	aaeB	NIAGMN_15535	0.41	-1.2
3,079,108	-	aaeB	NIAGMN_15535	0.41	-0.8
3,079,136	+	aaeB	NIAGMN_15535	0.42	+1.2
3,079,186	-	aaeB	NIAGMN_15535	0.45	-0.3
3,079,225	+	aaeB	NIAGMN_15535	0.47	-0.4
3,079,225	+	aaeB	NIAGMN_15535	0.47	-0.4
3,079,225	+	aaeB	NIAGMN_15535	0.47	+2.3
3,079,225	+	aaeB	NIAGMN_15535	0.47	+0.0
3,079,225	+	aaeB	NIAGMN_15535	0.47	+1.1
3,079,226	-	aaeB	NIAGMN_15535	0.47	-0.6
3,079,226	-	aaeB	NIAGMN_15535	0.47	+0.8
3,079,226	-	aaeB	NIAGMN_15535	0.47	-0.9
3,079,226	-	aaeB	NIAGMN_15535	0.47	+0.1
3,079,226	-	aaeB	NIAGMN_15535	0.47	-1.5
3,079,226	-	aaeB	NIAGMN_15535	0.47	-1.3
3,079,226	-	aaeB	NIAGMN_15535	0.47	+0.6
3,079,226	-	aaeB	NIAGMN_15535	0.47	-3.2
3,079,227	+	aaeB	NIAGMN_15535	0.47	+0.7
3,079,227	+	aaeB	NIAGMN_15535	0.47	+1.4
3,079,340	+	aaeB	NIAGMN_15535	0.53	-1.9
3,079,340	+	aaeB	NIAGMN_15535	0.53	+1.2
3,079,341	-	aaeB	NIAGMN_15535	0.53	-2.3
3,079,578	+	aaeB	NIAGMN_15535	0.65	-0.1
3,079,578	+	aaeB	NIAGMN_15535	0.65	+0.6
3,079,584	+	aaeB	NIAGMN_15535	0.65	+0.5
3,079,588	-	aaeB	NIAGMN_15535	0.65	+0.7
3,079,614	+	aaeB	NIAGMN_15535	0.67	+0.7
3,079,614	+	aaeB	NIAGMN_15535	0.67	+0.5
3,079,614	+	aaeB	NIAGMN_15535	0.67	+0.1
3,079,614	+	aaeB	NIAGMN_15535	0.67	+1.6
3,079,614	+	aaeB	NIAGMN_15535	0.67	+0.3
3,079,614	+	aaeB	NIAGMN_15535	0.67	-3.2
3,079,615	-	aaeB	NIAGMN_15535	0.67	-3.1
3,079,617	+	aaeB	NIAGMN_15535	0.67	+0.8
3,079,618	-	aaeB	NIAGMN_15535	0.67	+1.3
3,079,650	-	aaeB	NIAGMN_15535	0.68	-0.6
3,079,650	-	aaeB	NIAGMN_15535	0.68	-0.1
3,079,656	-	aaeB	NIAGMN_15535	0.69	+0.4
3,079,700	+	aaeB	NIAGMN_15535	0.71	-0.4
3,079,701	-	aaeB	NIAGMN_15535	0.71	+0.7
3,079,701	-	aaeB	NIAGMN_15535	0.71	+1.0
3,079,701	-	aaeB	NIAGMN_15535	0.71	+1.8
3,079,701	-	aaeB	NIAGMN_15535	0.71	-0.6
3,079,704	+	aaeB	NIAGMN_15535	0.71	+0.2
3,079,704	+	aaeB	NIAGMN_15535	0.71	+0.6
3,079,704	+	aaeB	NIAGMN_15535	0.71	-0.7
3,079,705	-	aaeB	NIAGMN_15535	0.71	+1.5
3,079,705	-	aaeB	NIAGMN_15535	0.71	+0.8
3,079,705	-	aaeB	NIAGMN_15535	0.71	+0.9
3,079,801	-	aaeB	NIAGMN_15535	0.76	-0.9
3,079,801	-	aaeB	NIAGMN_15535	0.76	-0.4
3,079,844	+	aaeB	NIAGMN_15535	0.78	-0.2
3,079,844	+	aaeB	NIAGMN_15535	0.78	+1.4
3,079,844	+	aaeB	NIAGMN_15535	0.78	-0.1
3,079,851	+	aaeB	NIAGMN_15535	0.79	-1.1
3,079,851	+	aaeB	NIAGMN_15535	0.79	+0.9
3,079,887	+	aaeB	NIAGMN_15535	0.80	+0.2
3,079,930	+	aaeB	NIAGMN_15535	0.83	-0.4
3,079,931	-	aaeB	NIAGMN_15535	0.83	+0.7
3,079,956	+	aaeB	NIAGMN_15535	0.84	-0.1
3,079,956	+	aaeB	NIAGMN_15535	0.84	+0.6
3,079,956	+	aaeB	NIAGMN_15535	0.84	+0.3
3,079,956	+	aaeB	NIAGMN_15535	0.84	+2.5
3,079,956	+	aaeB	NIAGMN_15535	0.84	-2.5
3,079,957	-	aaeB	NIAGMN_15535	0.84	+0.7
3,080,100	-				+0.9
3,080,177	+				+0.2
3,080,177	+				+0.4
3,080,178	-				+0.5
3,080,178	-				-0.1
3,080,178	-				+0.8
3,080,178	-				+1.0
3,080,241	+				+0.1
3,080,241	+				+1.0
3,080,241	+				+0.6
3,080,241	+				+0.6
3,080,242	-				+0.6
3,080,242	-				+1.4
3,080,242	-				-4.6
3,080,242	-				-0.2
3,080,242	-				-0.5
3,080,242	-				-3.2
3,080,245	+				+0.2
3,080,245	+				-0.2
3,080,245	+				+0.1
3,080,245	+				-2.1
3,080,246	-				-0.9
3,080,246	-				-0.2
3,080,246	-				-2.9
3,080,246	-				-0.3
3,080,265	+				+0.4
3,080,266	-				+1.4
3,080,266	-				-0.2
3,080,269	+				+0.1
3,080,269	+				+1.2
3,080,269	+				-2.2
3,080,269	+				+0.3
3,080,270	-				-1.5
3,080,310	+				+0.7
3,080,310	+				-0.4
3,080,312	+				+2.2
3,080,312	+				-0.3
3,080,312	+				+1.4
3,080,313	-				-0.8
3,080,313	-				+0.6
3,080,313	-				+0.7
3,080,313	-				-0.5
3,080,313	-				-0.2
3,080,313	-				+0.1
3,080,313	-				+0.6
3,080,313	-				+1.5
3,080,316	+				-0.1
3,080,317	-				-1.0
3,080,368	+				-1.2
3,080,369	-				+0.4
3,080,372	+				-2.9
3,080,372	+				+0.6
3,080,373	-				+0.4
3,080,373	-				-0.8
3,080,375	-				-1.6
3,080,375	-				+0.0
3,080,452	+	yhcO	NIAGMN_15540	0.33	+2.0
3,080,452	+	yhcO	NIAGMN_15540	0.33	+0.3
3,080,452	+	yhcO	NIAGMN_15540	0.33	-3.1
3,080,453	-	yhcO	NIAGMN_15540	0.33	+1.1
3,080,457	+	yhcO	NIAGMN_15540	0.34	+1.5
3,080,571	+	yhcO	NIAGMN_15540	0.76	+0.6
3,080,571	+	yhcO	NIAGMN_15540	0.76	+1.5
3,080,572	-	yhcO	NIAGMN_15540	0.77	-0.1
3,080,572	-	yhcO	NIAGMN_15540	0.77	+0.3
3,080,572	-	yhcO	NIAGMN_15540	0.77	-0.0
3,080,621	-				+1.1
3,080,693	-				+0.7
3,080,693	-				-0.3
3,080,699	-				+0.6
3,080,699	-				-0.1
3,080,699	-				-1.2
3,080,745	-	yhcN	NIAGMN_15545	0.20	+1.7
3,080,801	+	yhcN	NIAGMN_15545	0.42	-0.4
3,080,802	-	yhcN	NIAGMN_15545	0.42	+0.2
3,080,802	-	yhcN	NIAGMN_15545	0.42	-3.1
3,080,829	+	yhcN	NIAGMN_15545	0.52	-0.2
3,080,830	-	yhcN	NIAGMN_15545	0.53	-0.4
3,080,925	+	yhcN	NIAGMN_15545	0.89	+0.6
3,080,926	-	yhcN	NIAGMN_15545	0.89	-2.7
3,080,926	-	yhcN	NIAGMN_15545	0.89	-2.7
3,080,979	+				+0.6
3,081,023	-				+1.9
3,081,190	+				-0.1
3,081,190	+				-0.7
3,081,195	-				-1.0