Strain Fitness in Escherichia coli ECRC102 around NIAGMN_10310

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,023,122	+	yjdC	NIAGMN_10300	0.69	+0.7
2,023,155	+	yjdC	NIAGMN_10300	0.75	-0.8
2,023,156	-	yjdC	NIAGMN_10300	0.75	+1.4
2,023,156	-	yjdC	NIAGMN_10300	0.75	+1.4
2,023,213	+	yjdC	NIAGMN_10300	0.85	+0.4
2,023,255	+				+1.6
2,023,336	+				+1.1
2,023,336	+				-3.0
2,023,336	+				-0.7
2,023,365	-				+0.7
2,023,365	-				+0.6
2,023,386	+				+1.1
2,023,394	-				-0.5
2,023,541	-				-0.7
2,023,614	+				-2.0
2,023,645	+				-0.1
2,023,645	+				+1.7
2,023,645	+				-0.6
2,023,646	-				-0.3
2,023,646	-				+1.8
2,023,646	-				-0.6
2,023,647	+				+0.6
2,023,647	+				+1.5
2,023,648	-				+0.6
2,023,648	-				-0.5
2,023,653	+				+0.2
2,023,654	-				-0.0
2,023,654	-				-1.3
2,023,657	+				-0.2
2,023,658	-				-0.5
2,023,720	-				+0.3
2,023,795	-				+0.5
2,023,837	+				-0.1
2,023,840	+				-0.9
2,023,841	-				-4.2
2,023,963	+				-0.4
2,023,963	+				+0.8
2,024,032	+				-0.5
2,024,033	-				+1.3
2,024,034	+				-0.7
2,024,034	+				+0.6
2,024,034	+				+0.1
2,024,034	+				+0.7
2,024,034	+				+0.4
2,024,034	+				-2.5
2,024,035	-				+0.3
2,024,035	-				+0.6
2,024,061	+				-0.3
2,024,099	-				+0.1
2,024,112	+				-1.4
2,024,138	-				+1.9
2,024,138	-				-0.5
2,024,238	+				+1.3
2,024,239	-				+0.3
2,024,242	+				+1.4
2,024,281	+	cadC	NIAGMN_10310	0.12	-0.5
2,024,281	+	cadC	NIAGMN_10310	0.12	-0.0
2,024,281	+	cadC	NIAGMN_10310	0.12	+0.8
2,024,282	-	cadC	NIAGMN_10310	0.12	+0.4
2,024,311	+	cadC	NIAGMN_10310	0.14	-0.5
2,024,326	+	cadC	NIAGMN_10310	0.15	+1.5
2,024,327	-	cadC	NIAGMN_10310	0.15	+0.2
2,024,327	-	cadC	NIAGMN_10310	0.15	+0.2
2,024,363	+	cadC	NIAGMN_10310	0.17	-0.2
2,024,364	-	cadC	NIAGMN_10310	0.17	+2.2
2,024,376	+	cadC	NIAGMN_10310	0.18	+1.3
2,024,397	+	cadC	NIAGMN_10310	0.19	+0.2
2,024,398	-	cadC	NIAGMN_10310	0.19	+1.0
2,024,442	+	cadC	NIAGMN_10310	0.22	+2.4
2,024,442	+	cadC	NIAGMN_10310	0.22	-0.0
2,024,442	+	cadC	NIAGMN_10310	0.22	-0.3
2,024,442	+	cadC	NIAGMN_10310	0.22	-2.7
2,024,442	+	cadC	NIAGMN_10310	0.22	+1.2
2,024,443	-	cadC	NIAGMN_10310	0.22	+1.7
2,024,443	-	cadC	NIAGMN_10310	0.22	-0.7
2,024,448	+	cadC	NIAGMN_10310	0.23	+1.0
2,024,448	+	cadC	NIAGMN_10310	0.23	+0.7
2,024,449	-	cadC	NIAGMN_10310	0.23	-2.6
2,024,466	+	cadC	NIAGMN_10310	0.24	-2.2
2,024,466	+	cadC	NIAGMN_10310	0.24	+0.1
2,024,467	-	cadC	NIAGMN_10310	0.24	-0.1
2,024,509	+	cadC	NIAGMN_10310	0.27	+0.5
2,024,509	+	cadC	NIAGMN_10310	0.27	-0.4
2,024,510	-	cadC	NIAGMN_10310	0.27	+1.6
2,024,551	+	cadC	NIAGMN_10310	0.29	+0.5
2,024,604	+	cadC	NIAGMN_10310	0.33	-0.3
2,024,608	+	cadC	NIAGMN_10310	0.33	+1.6
2,024,609	-	cadC	NIAGMN_10310	0.33	-1.5
2,024,609	-	cadC	NIAGMN_10310	0.33	-0.6
2,024,609	-	cadC	NIAGMN_10310	0.33	+0.1
2,024,609	-	cadC	NIAGMN_10310	0.33	+0.1
2,024,609	-	cadC	NIAGMN_10310	0.33	-0.2
2,024,609	-	cadC	NIAGMN_10310	0.33	+0.7
2,024,609	-	cadC	NIAGMN_10310	0.33	-2.8
2,024,617	-	cadC	NIAGMN_10310	0.34	-0.5
2,024,617	-	cadC	NIAGMN_10310	0.34	+0.2
2,024,617	-	cadC	NIAGMN_10310	0.34	+1.2
2,024,644	+	cadC	NIAGMN_10310	0.35	-0.4
2,024,645	-	cadC	NIAGMN_10310	0.35	-0.7
2,024,701	+	cadC	NIAGMN_10310	0.39	+1.7
2,024,701	+	cadC	NIAGMN_10310	0.39	+0.2
2,024,701	+	cadC	NIAGMN_10310	0.39	-2.3
2,024,705	-	cadC	NIAGMN_10310	0.39	-1.6
2,024,709	+	cadC	NIAGMN_10310	0.40	-0.1
2,024,710	-	cadC	NIAGMN_10310	0.40	-0.1
2,024,710	-	cadC	NIAGMN_10310	0.40	+0.1
2,024,710	-	cadC	NIAGMN_10310	0.40	-0.1
2,024,713	+	cadC	NIAGMN_10310	0.40	-3.3
2,024,722	+	cadC	NIAGMN_10310	0.40	+0.0
2,024,741	+	cadC	NIAGMN_10310	0.42	+0.1
2,024,754	-	cadC	NIAGMN_10310	0.43	+0.6
2,024,791	+	cadC	NIAGMN_10310	0.45	-0.2
2,024,868	+	cadC	NIAGMN_10310	0.50	-0.7
2,024,868	+	cadC	NIAGMN_10310	0.50	+1.8
2,024,869	-	cadC	NIAGMN_10310	0.50	+0.0
2,024,869	-	cadC	NIAGMN_10310	0.50	-0.3
2,024,869	-	cadC	NIAGMN_10310	0.50	+1.2
2,024,869	-	cadC	NIAGMN_10310	0.50	+0.8
2,024,872	+	cadC	NIAGMN_10310	0.50	+0.9
2,024,884	+	cadC	NIAGMN_10310	0.51	-0.0
2,024,917	+	cadC	NIAGMN_10310	0.53	+2.4
2,024,917	+	cadC	NIAGMN_10310	0.53	-0.7
2,024,918	-	cadC	NIAGMN_10310	0.53	-0.3
2,024,973	-	cadC	NIAGMN_10310	0.57	-1.2
2,024,973	-	cadC	NIAGMN_10310	0.57	+0.2
2,025,027	+	cadC	NIAGMN_10310	0.60	+2.0
2,025,138	+	cadC	NIAGMN_10310	0.68	-0.5
2,025,180	+	cadC	NIAGMN_10310	0.70	+0.8
2,025,184	-	cadC	NIAGMN_10310	0.71	-0.3
2,025,322	+	cadC	NIAGMN_10310	0.79	+0.6
2,025,354	+	cadC	NIAGMN_10310	0.82	-0.1
2,025,577	-				+0.5
2,025,597	-				+0.7
2,025,603	+				-2.3
2,025,604	-				-2.6
2,025,639	+				-1.4
2,025,640	-				-0.2
2,025,953	-				+1.1
2,025,954	+				-0.2
2,025,955	-				+1.2
2,026,082	+				-0.2
2,026,097	+				-1.2
2,026,144	-	cadB	NIAGMN_10315	0.11	+2.0
2,026,169	+	cadB	NIAGMN_10315	0.12	-0.4
2,026,170	-	cadB	NIAGMN_10315	0.13	+0.0
2,026,278	+	cadB	NIAGMN_10315	0.21	-1.3
2,026,305	+	cadB	NIAGMN_10315	0.23	+1.6
2,026,317	-	cadB	NIAGMN_10315	0.24	+2.6
2,026,346	+	cadB	NIAGMN_10315	0.26	-2.2
2,026,346	+	cadB	NIAGMN_10315	0.26	-4.0
2,026,346	+	cadB	NIAGMN_10315	0.26	+0.4
2,026,347	-	cadB	NIAGMN_10315	0.26	+0.4
2,026,377	+	cadB	NIAGMN_10315	0.28	+0.0
2,026,377	+	cadB	NIAGMN_10315	0.28	-2.7
2,026,377	+	cadB	NIAGMN_10315	0.28	-0.1
2,026,377	+	cadB	NIAGMN_10315	0.28	+0.7
2,026,378	-	cadB	NIAGMN_10315	0.28	+1.4
2,026,406	+	cadB	NIAGMN_10315	0.30	+0.0
2,026,407	-	cadB	NIAGMN_10315	0.30	-0.1
2,026,410	+	cadB	NIAGMN_10315	0.30	-3.4
2,026,446	+	cadB	NIAGMN_10315	0.33	-1.3
2,026,446	+	cadB	NIAGMN_10315	0.33	+1.2
2,026,488	+	cadB	NIAGMN_10315	0.36	+0.0
2,026,489	-	cadB	NIAGMN_10315	0.36	-1.3
2,026,522	+	cadB	NIAGMN_10315	0.39	+0.3
2,026,522	+	cadB	NIAGMN_10315	0.39	+1.2
2,026,523	-	cadB	NIAGMN_10315	0.39	-0.1
2,026,523	-	cadB	NIAGMN_10315	0.39	+1.2
2,026,523	-	cadB	NIAGMN_10315	0.39	+0.9
2,026,523	-	cadB	NIAGMN_10315	0.39	-0.8
2,026,531	-	cadB	NIAGMN_10315	0.40	-1.2
2,026,539	+	cadB	NIAGMN_10315	0.40	+0.0
2,026,578	+	cadB	NIAGMN_10315	0.43	+1.5
2,026,625	+	cadB	NIAGMN_10315	0.47	+1.7
2,026,625	+	cadB	NIAGMN_10315	0.47	-0.2
2,026,626	-	cadB	NIAGMN_10315	0.47	+2.1
2,026,626	-	cadB	NIAGMN_10315	0.47	-1.9
2,026,629	+	cadB	NIAGMN_10315	0.47	-0.2
2,026,629	+	cadB	NIAGMN_10315	0.47	-0.8
2,026,630	-	cadB	NIAGMN_10315	0.47	+0.8
2,026,635	+	cadB	NIAGMN_10315	0.47	+0.4
2,026,636	-	cadB	NIAGMN_10315	0.47	+0.9
2,026,636	-	cadB	NIAGMN_10315	0.47	+0.6